mRNA_H-elongata_contig65236.14113.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65236.14113.1
Unique NamemRNA_H-elongata_contig65236.14113.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Match: D8LGU6_ECTSI (Post-SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU6_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.630e-22
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   55 MNHSCAPNCMMEI-----DASLRVTVRDSNVPKGDLMTLDYNAMEVDISQPFHCNCGAGNCRGFISGFAKLPSTAKEEY 276
            MNHSC PNC +E+        LRVTVR   V   +L+T+DYNAME+D++ PF C CGA  CRG++SGF+ L    +EEY
Sbjct:    1 MNHSCEPNCQLEVVDTAEQPYLRVTVRAPRVQPSELLTIDYNAMEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEY 79          
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Match: A0A6H5K6N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.190e-21
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    1 SIQVGDGKNIIVDNDMDLMNHSCAPNCMMEI-----DASLRVTVRDSNVPKGDLMTLDYNAMEVDISQPFHCNCGAGNCRGFISGFAKLPSTAKEEY 276
            S+Q+   +++   +D+ LMNHSC PNC +E+        LRVTVR   V   + + +DYNAME+D++ PF C CGA  CRG++SGF+ L    +EEY
Sbjct:  142 SVQLSKERHLETGSDLALMNHSCEPNCQLEVVDTAEQPYLRVTVRAPRVQPNEALEIDYNAMEIDMTCPFDCQCGAVRCRGWVSGFSNLSRAEQEEY 238          
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Match: A0A6H5JKC4_9PHAE (Post-SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKC4_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 6.200e-14
Identity = 45/147 (30.61%), Postives = 65/147 (44.22%), Query Frame = 1
Query:    1 SIQVGDGKNIIVDNDMDLMNHSCAPNCMMEI-DAS------------------------------------------------------LRVTVRDSNVPKGDLMTLDYNAMEVDISQPFHCNCGAGNCRGFISGFAKLPSTAKEEY 276
            S+QV   +++    D+  +NHSC PNC +E+ DA+                                                      LRVTVR   +   +L+T+DYNAME+D+S PF C CGA  CRG++SGF+ L    ++EY
Sbjct:  185 SVQVSKERHLEARCDLMFLNHSCEPNCQLEVVDAADHWVGWKSWANPNPIGIRKGVIEILKCSTLEKYCSNNRRAHAMNTFCNPQEQPYLRVTVRAPRIRPNELLTIDYNAMEIDMSCPFDCQCGAVRCRGWVSGFSNLSRAEQKEY 331          
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Match: A0A1Q5UMQ8_9EURO (Post-SET domain-containing protein n=2 Tax=Penicillium TaxID=5073 RepID=A0A1Q5UMQ8_9EURO)

HSP 1 Score: 68.2 bits (165), Expect = 2.980e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1
Query:    1 SIQVGDGKNIIVDNDMDLMNHSCAPNCMMEIDASLRVTVRDSNVPK-GDLMTLDYNAMEVDISQPFHCNCGAGNCRGFISG 240
            S+Q G   +I +++D+   NHSCAP+ + ++ A + V V D    K GD +T  Y + E ++ QPF C CGAG CRG+ISG
Sbjct:   67 SVQTGRDTHIELNSDLVYCNHSCAPSLVFDM-ARMEVRVVDDKPLKAGDALTFFYPSTEWEMDQPFQCTCGAGECRGWISG 146          
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Match: UPI001495B7FC (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Streptomyces nanshensis TaxID=518642 RepID=UPI001495B7FC)

HSP 1 Score: 63.9 bits (154), Expect = 5.270e-11
Identity = 37/100 (37.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:    1 SIQVGDGKNIIVDNDMD-----------LMNHSCAPNCMMEIDASLRVTVRDSNVPKGDLMTLDYNAMEVDISQPFHCNCGAGNCRGFISGFAKLPSTAK 267
            S+Q+GDG ++ + +  D            MNHSC PN  +E        VRD  +  GD +T  YN  E+D+S+PF C CG+  C G I+GFA     A+
Sbjct:    9 SLQIGDGIHLDLPSGYDQETIMDSYFWRFMNHSCEPNATVE--GRQVKAVRD--IGPGDEITFHYNTTELDMSEPFDCECGSALCEGRIAGFAHTTREAR 104          
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Match: A0A1E7LCM6_9ACTN (Post-SET domain-containing protein n=1 Tax=Streptomyces nanshensis TaxID=518642 RepID=A0A1E7LCM6_9ACTN)

HSP 1 Score: 63.9 bits (154), Expect = 1.100e-10
Identity = 37/100 (37.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:    1 SIQVGDGKNIIVDNDMD-----------LMNHSCAPNCMMEIDASLRVTVRDSNVPKGDLMTLDYNAMEVDISQPFHCNCGAGNCRGFISGFAKLPSTAK 267
            S+Q+GDG ++ + +  D            MNHSC PN  +E        VRD  +  GD +T  YN  E+D+S+PF C CG+  C G I+GFA     A+
Sbjct:   45 SLQIGDGIHLDLPSGYDQETIMDSYFWRFMNHSCEPNATVE--GRQVKAVRD--IGPGDEITFHYNTTELDMSEPFDCECGSALCEGRIAGFAHTTREAR 140          
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Match: A0A0N1DCX2_9PSED (Lysine methyltransferase n=1 Tax=Pseudomonas sp. RIT-PI-q TaxID=1690247 RepID=A0A0N1DCX2_9PSED)

HSP 1 Score: 59.7 bits (143), Expect = 5.410e-9
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   52 LMNHSCAPNCMMEIDASLRVTVRDSNVPKGDLMTLDYNAMEVDISQPFHCNCGAGNCRGFISGFAKLPS 258
            L+ HSC PN  +++       ++D  + KGD +T+DY A E  + + F C CGA +CRG+I+G+ + P+
Sbjct:   92 LLRHSCDPNVFLDMSELWLWALKD--IKKGDRLTMDYAATEDQLRRQFACQCGAYDCRGWITGYDEPPN 158          
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Match: A0A378YUP6_9BURK (SET domain-containing protein n=7 Tax=Burkholderiaceae TaxID=119060 RepID=A0A378YUP6_9BURK)

HSP 1 Score: 58.9 bits (141), Expect = 9.350e-9
Identity = 26/68 (38.24%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   52 LMNHSCAPNCMMEIDASLRVTVRDSNVPKGDLMTLDYNAMEVDISQPFHCNCGAGNCRGFISGFAKLP 255
            L+ HSCAP+ ++++       +RD  +  G+ +T+DY   E  +++ F C CGA NCR +I+GF +LP
Sbjct:   80 LLLHSCAPSSVLDMKRLEIFALRD--ISAGEFLTIDYACTEEVLARQFSCECGAPNCRRWITGFRELP 145          
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Match: A0A5E4RGH5_9BURK (SET domain containing protein n=3 Tax=Pandoraea TaxID=93217 RepID=A0A5E4RGH5_9BURK)

HSP 1 Score: 54.7 bits (130), Expect = 4.110e-7
Identity = 25/75 (33.33%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   52 LMNHSCAPNCMMEIDASLRVTVRDSNVPKGDLMTLDYNAMEVDISQPFHCNCGAGNCRGFISGFAKLPSTAKEEY 276
            L+ HSC+P+  +++       +RD  +   + +T+DY + E  + + F C CGA NCR +I+GF +LP+   + Y
Sbjct:   81 LLLHSCSPSVGLDMQRLEVWALRD--IEANEFLTMDYASTEDVLFRQFECQCGAPNCRKWITGFKELPNNEGKAY 153          
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Match: A0A328B7D7_9CAUL (SET domain-containing protein n=1 Tax=Phenylobacterium kunshanense TaxID=1445034 RepID=A0A328B7D7_9CAUL)

HSP 1 Score: 54.3 bits (129), Expect = 4.420e-7
Identity = 27/86 (31.40%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    1 SIQVGDGKNIIVDNDMDLMNHSCAPNCMMEIDASLRVTVRDSNVPKGDLMTLDYNAMEVDISQPFHCNCGAGNCRGFISGFAKLPS 258
            S+QV +  +I     +  ++HSC PNC +++       +RD  +  G+ +T+DY   E  + + F C CGA +CR +++G  +LP+
Sbjct:   55 SLQVTEDLHISETRFIGYLSHSCEPNCRLDMVRFELSALRD--IAPGERLTIDYAETEDRLYRQFACECGAPDCRRWVTGRRELPA 138          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65236.14113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGU6_ECTSI3.630e-2251.90Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6N9_9PHAE2.190e-2144.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKC4_9PHAE6.200e-1430.61Post-SET domain-containing protein n=1 Tax=Ectocar... [more]
A0A1Q5UMQ8_9EURO2.980e-1243.21Post-SET domain-containing protein n=2 Tax=Penicil... [more]
UPI001495B7FC5.270e-1137.00SET domain-containing protein-lysine N-methyltrans... [more]
A0A1E7LCM6_9ACTN1.100e-1037.00Post-SET domain-containing protein n=1 Tax=Strepto... [more]
A0A0N1DCX2_9PSED5.410e-937.68Lysine methyltransferase n=1 Tax=Pseudomonas sp. R... [more]
A0A378YUP6_9BURK9.350e-938.24SET domain-containing protein n=7 Tax=Burkholderia... [more]
A0A5E4RGH5_9BURK4.110e-733.33SET domain containing protein n=3 Tax=Pandoraea Ta... [more]
A0A328B7D7_9CAUL4.420e-731.40SET domain-containing protein n=1 Tax=Phenylobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65236contigH-elongata_contig65236:731..1686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.6
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog264951.V5HXU1
KEGG rclassRC00204
KEGG koko:K01487
KEGG ReactionR01676
KEGG Pathwayko00230,ko01100,map00230,map01100
EggNOG free text desc.Guanine deaminase
EggNOG OGs20EB8@147545,38CBX@33154,3NU83@4751,3QJIV@4890,3S30J@5042,COG0402@1,KOG3968@2759
EC3.5.4.3
COG Functional cat.FQ
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931039.554708-CDS-H-elongata_contig65236:730..8231622931039.554708-CDS-H-elongata_contig65236:730..823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65236 731..823 +
1691679672.993195-CDS-H-elongata_contig65236:730..8231691679672.993195-CDS-H-elongata_contig65236:730..823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65236 731..823 +
1622931039.5662203-CDS-H-elongata_contig65236:1503..16861622931039.5662203-CDS-H-elongata_contig65236:1503..1686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65236 1504..1686 +
1691679673.0059597-CDS-H-elongata_contig65236:1503..16861691679673.0059597-CDS-H-elongata_contig65236:1503..1686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65236 1504..1686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65236.14113.1prot_H-elongata_contig65236.14113.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65236 731..1686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65236.14113.1

>prot_H-elongata_contig65236.14113.1 ID=prot_H-elongata_contig65236.14113.1|Name=mRNA_H-elongata_contig65236.14113.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
SIQVGDGKNIIVDNDMDLMNHSCAPNCMMEIDASLRVTVRDSNVPKGDLM
TLDYNAMEVDISQPFHCNCGAGNCRGFISGFAKLPSTAKEEY
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mRNA from alignment at H-elongata_contig65236:731..1686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65236.14113.1 ID=mRNA_H-elongata_contig65236.14113.1|Name=mRNA_H-elongata_contig65236.14113.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=956bp|location=Sequence derived from alignment at H-elongata_contig65236:731..1686+ (Himanthalia elongata Himel1 dioecious)
AGCATTCAAGTCGGCGACGGGAAGAACATTATAGTAGATAACGACATGGA TCTCATGAACCACAGCTGTGCGCCCAACTGCATGATGGAGATCGTGGATG GGTTGAATGGTCAAGTAAGTCAAAGCATTTTGATTGTCGCGCTATGTTAT TGTTTCTCATATTAAGCGTATTGGTTGCCAACATGAAAAAACCCTATTCT ATACGGTGGCCAATCCCGCTCGTGATCTGAGCTTCATATGTCTGATATGT TCTGAAAGAAGTCACAACGAGTATTTCCGTCGAATGTATGCTACCAGAGG CTAGACTGGTCGCCCCCACTTGACTGAACTATTTTTTTTCCTGTCGAATT TTTCGATTGGACTTCAACCTCCGCAAGAGAGAGAGGGTCAACGGGAACGC CGTGGACGACAACCGATTGTGTGCGCACCACTGTAGGAAGCAACGATGAG CATTATTTCACTTCTTGTGCTACTATTGGTATATTTGTTTTCTGGAAAAA AGTAATGATGGGTTTTCAATCCGCTGGGTGTGGTGCATGGTGAGCGCCCG GGAATATTCCTCTTCATGCGCTCGTCGACACCGCTTTTACGTGTTTTGTA GAGCTGGACCCTGATCTGAATGGAATGTGCATGCGAGGGGATGTTTTTTT GTGAAACTTGCTTTAATTAAACTTACCTCCTGGATGAATCGCCTCATCGG TATTTTCAACGAACGGCCAACGGTGGTTAAATAGGTCTTTTGCTAACTAA CGTCGATCGTTACCCCTCGACAGGACGCTTCCTTGCGCGTGACCGTGAGG GATAGCAATGTACCCAAGGGCGACCTCATGACCTTGGACTACAATGCAAT GGAGGTGGACATATCGCAGCCCTTTCACTGTAATTGTGGCGCTGGAAACT GCCGAGGTTTTATCTCTGGCTTCGCCAAGCTTCCCTCCACCGCCAAGGAG GAATAC
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Coding sequence (CDS) from alignment at H-elongata_contig65236:731..1686+

>mRNA_H-elongata_contig65236.14113.1 ID=mRNA_H-elongata_contig65236.14113.1|Name=mRNA_H-elongata_contig65236.14113.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig65236:731..1686+ (Himanthalia elongata Himel1 dioecious)
AGCATTCAAGTCGGCGACGGGAAGAACATTATAGTAGATAACGACATGGA
TCTCATGAACCACAGCTGTGCGCCCAACTGCATGATGGAGATCAGCATTC
AAGTCGGCGACGGGAAGAACATTATAGTAGATAACGACATGGATCTCATG
AACCACAGCTGTGCGCCCAACTGCATGATGGAGATCGACGCTTCCTTGCG
CGTGACCGTGAGGGATAGCAATGTACCCAAGGGCGACCTCATGACCTTGG
ACTACAATGCAATGGAGGTGGACATATCGCAGCCCTTTCACTGTAATTGT
GGCGCTGGAAACTGCCGAGGTTTTATCTCTGGCTTCGCCAAGCTTCCCTC
CACCGCCAAGGAGGAATACGACGCTTCCTTGCGCGTGACCGTGAGGGATA
GCAATGTACCCAAGGGCGACCTCATGACCTTGGACTACAATGCAATGGAG
GTGGACATATCGCAGCCCTTTCACTGTAATTGTGGCGCTGGAAACTGCCG
AGGTTTTATCTCTGGCTTCGCCAAGCTTCCCTCCACCGCCAAGGAGGAAT
AC
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