mRNA_H-elongata_contig6519.14110.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6519.14110.1 vs. uniprot
Match: D7G0V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V5_ECTSI) HSP 1 Score: 466 bits (1198), Expect = 3.080e-148 Identity = 309/656 (47.10%), Postives = 388/656 (59.15%), Query Frame = 1
Query: 1 LARLVDSLLRGRSSPSARHEAAAAMSDVRSFVRKWRTARRETGTPTTESQKTGPPSPDILLKLAQKGVHLHNNVRKLPQSKEGGSGDWKSTTIAYLRATAASLVSLGSTSSPKDCANLCRLFSKAGDMLVEAAEDDIRASALEMFDDAQAFFSRLPSSFY-------GKLSLAAEDLVMAMHKASTRRTEVLSRTTGNVDEMVTGYEDQLNMLSKVAPPGLSVSTATHAASVGEERFRKGDCRGASRLFRVSLRALGADLGEETTVVS----AGHA-ILRRTILFSLAHCYSKSGDHVLAIQCINNLGNGGQHSAEG---DPDAVEFFFAKCKVLCDAGDFPGAHGAAEALVEASSPP-------VTETSGATKLDLAAARMVSYRDKFSDRSLGLFSMIATRWAGSPKEFDAYIALLDGIGLAARLRSERCSAAATSADRTGDVVEPLGGHQKATEVATMV----VAKAEEIAEQCFLPECNAWNIAGCQVEAALEAFITFVEFFQGRREWKACTKWCDRAILLAENLMNSPVLATAPSEESSAADPSMLAGLLTLRGEAECRLGDFRSSAQSLDRALEVYPTYSRAREVAFWSASCDPTCDENLLSSRLSTLSGPLSGLDSRARCEYLTSCVALVAETSTTRRRQNESGEATIG 1890
+ARLVDSLLRGR+ SARHEAA A+SD+R+FV WR PD P SK D + +T R S S GS S + + D L++ A+ ALEMF+DA+ +FSRLP SFY G SL+AEDL+MA+HKAS+RR EVLSRTTGNVD+MV GYE QL +L+ +P GL +STA HAASVGEERF+KGDCRGASR+ R++L+A+G D+G T + A H LRRTILFSLAHC SKSGDH AI+ I +L GG A+G DP +F FAKCKVL DAGD GA+ AA+ALV + P V + LDLAAAR++S RD SDRSL LF+ IA+R+AG+PK DA +ALL G+ +AARLRSE A S D G H+K + A V +AE+ A+ N+A QV++ALE +TF EFFQGR +W++C +WC RAI LA P + ++ +LA LLTLRGE ECR GDF SS+Q+LD+AL + PTY RAREVAFWSA+ DP DE+ LS+RLS LSGP + L AR EYL +CV LVA + ++ GE+ G
Sbjct: 1 MARLVDSLLRGRAQASARHEAATAVSDIRAFVHAWR--------------------PDA------------------PASK-----DEQDSTEPEGRGRTRSHGSGGSDPS---------MNRPSADTLLKLAQ------ALEMFEDAEGYFSRLPGSFYATGWQKFGMPSLSAEDLIMAVHKASSRRIEVLSRTTGNVDQMVEGYEWQLKILTARSPAGLRMSTAVHAASVGEERFKKGDCRGASRILRLALQAIGGDVGSGPTATASDPQAAHTGKLRRTILFSLAHCCSKSGDHNNAIKFIKHLEEGGGWCAKGGGTDPPP-KFLFAKCKVLTDAGDLTGAYTAAKALVALTPAPSGKPTAGVGDGEPEDGLDLAAARLISSRDDCSDRSLDLFAAIASRFAGTPKAVDARVALLSGLAMAARLRSEGGGAGWWSPD---------GQHEKGSAAAATAENEAVGRAEKTADDMIAEISGCNNVATYQVDSALEVLVTFTEFFQGRDKWESCARWCGRAINLATGDSKGSTPKRVPHADKASL---LLASLLTLRGEMECRTGDFASSSQTLDQALALCPTYGRAREVAFWSAARDPNRDESSLSARLSALSGPRARLTPGARREYLATCVGLVAGVRKATQDPDQRGESDAG 585 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6519.14110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6519.14110.1 >prot_H-elongata_contig6519.14110.1 ID=prot_H-elongata_contig6519.14110.1|Name=mRNA_H-elongata_contig6519.14110.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=632bp LARLVDSLLRGRSSPSARHEAAAAMSDVRSFVRKWRTARRETGTPTTESQback to top mRNA from alignment at H-elongata_contig6519:4185..10384- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6519.14110.1 ID=mRNA_H-elongata_contig6519.14110.1|Name=mRNA_H-elongata_contig6519.14110.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6200bp|location=Sequence derived from alignment at H-elongata_contig6519:4185..10384- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6519:4185..10384- >mRNA_H-elongata_contig6519.14110.1 ID=mRNA_H-elongata_contig6519.14110.1|Name=mRNA_H-elongata_contig6519.14110.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3792bp|location=Sequence derived from alignment at H-elongata_contig6519:4185..10384- (Himanthalia elongata Himel1 dioecious)back to top |