prot_H-elongata_contig65161.14107.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig65161.14107.1
Unique Nameprot_H-elongata_contig65161.14107.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length130
Homology
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BLAST of mRNA_H-elongata_contig65161.14107.1 vs. uniprot
Match: A0A6H5KHL0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.890e-6
Identity = 33/67 (49.25%), Postives = 38/67 (56.72%), Query Frame = 0 
Query:    4 DKLPQAEELHRRALKIRQYTLGEDHPSTIASLCHLAASLRDQGKTSQCELLQRRAYEIRTTSREKAR 70
            +KLPQAEELHRRALKIRQYTLGED                        +LL RRA EIR+ +R + R
Sbjct: 2998 NKLPQAEELHRRALKIRQYTLGEDXXXXXXXXXXXXXXXXXXXXXHAGDLLLRRAGEIRSPARSRGR 3064
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65161.14107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHL0_9PHAE6.890e-649.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13424TPR_12coord: 1..63
e-value: 3.6E-11
score: 43.2
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 4..64
NoneNo IPR availablePANTHERPTHR45783:SF3KINESIN LIGHT CHAINcoord: 4..64
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..75
e-value: 9.3E-17
score: 62.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65161contigH-elongata_contig65161:694..1083 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65161.14107.1mRNA_H-elongata_contig65161.14107.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig65161 694..1083 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig65161.14107.1 ID=prot_H-elongata_contig65161.14107.1|Name=mRNA_H-elongata_contig65161.14107.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
RRQDKLPQAEELHRRALKIRQYTLGEDHPSTIASLCHLAASLRDQGKTSQ
CELLQRRAYEIRTTSREKARSSRIGLEVKASHWDGGYEMERYEEDRLPPL
VTMGEVNRGMDAAQWGGRRSFGGVGRGRGE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf