mRNA_H-elongata_contig65144.14105.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig65144.14105.1 vs. uniprot
Match: D7G0I5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0I5_ECTSI) HSP 1 Score: 218 bits (554), Expect = 1.770e-68 Identity = 125/194 (64.43%), Postives = 152/194 (78.35%), Query Frame = 1
Query: 1 PSTCVLTGHRQEEEEPDKSAVAHGTAPKMSTTKAAKAEAEKEARIAAEIESRLQLSETAEQRRMRDRNRVEEADNELTNDLFGGDGNR-KGAAGGIASLSLKNMQDHMKLAIELCEKMESSKPAHVTGFFKEMITKLSSNMTTDGMTDVVNHLVVFRDEKRQAEERIAAAKANVLNIQAKQRANKKKSAKQKKA 579
P+ ++ +EE++ D AVA G APKMS KAA IAAE+E+RLQL ETAEQRR+R+RNRVEEADN+LT DLFGG G R +GA GG++ L+LKNMQDH+KLAIEL E+M+SSKPAH+T F KE++TKLS MT DG+TD+VNH +FRDEKRQAEERIA+AKAN N+ A QRANKKKS K+KKA
Sbjct: 18 PTAVPVSWEDEEEDQEDAGAVAPGLAPKMSAAKAAXXXXXXXXXIAAELETRLQLGETAEQRRLRERNRVEEADNDLTEDLFGGGGARGQGAGGGLSGLALKNMQDHVKLAIELAERMDSSKPAHMTAFLKELVTKLSPKMTADGLTDLVNHTTMFRDEKRQAEERIASAKANKTNVIANQRANKKKSIKKKKA 211
BLAST of mRNA_H-elongata_contig65144.14105.1 vs. uniprot
Match: A0A836CNA4_9STRA (Eukaryotic translation initiation factor 3 subunit J n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA4_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.200e-16 Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 130 RIAAEIESRLQLSETAEQRRMRDRNRVEEADNELTNDLFGGDGNRKGAAG----GIASLSLKNMQDHMKLAIELCEKME----SSKPAHVTGFFKEMITKLSSNMTTDGMTDVVNHLVVFRDEKRQAEER 495
RIAA E+ Q +ETAE+RR+R+R RVEE+D+ LT DLFGG G + A G+ + LK QDH+KLA++L EK+ S ++ KE+IT++ ++ + + HL F+D K AE++
Sbjct: 58 RIAAAHEAAQQEAETAEERRLRERRRVEESDHALTEDLFGGGGTAEAAEAPAQAGVEGIPLKTTQDHVKLALDLGEKLSKDGSSGSSGNILALLKELITRVEGKLSLEETNQLALHLNKFKDAKMVAEQK 187
BLAST of mRNA_H-elongata_contig65144.14105.1 vs. uniprot
Match: A0A7S2C417_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C417_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.660e-14 Identity = 48/132 (36.36%), Postives = 81/132 (61.36%), Query Frame = 1
Query: 67 HGTAPKMSTTKAAKAEAEKEARIAAEIESRLQLSETAEQRRMRDRNRVEEADNELTNDLFGGDGNRKGAAG---GIASLSLKNMQDHMKLAIELCEKMES--SKPAHVTGFFKEMITKLSSNMTTDGMTDVV 447
HG APK+S K AK + +K A+ ++ES LQ ET ++RR+R+R +E AD+ELT+DLFGG + G+ SLK+++DH+ LA ++ E++E+ SK ++ KE + K ++T + +++
Sbjct: 40 HGEAPKLSAEKQAKLKNQKNAKKRNDLESALQEEETDDERRLRERLEIENADHELTDDLFGGGAKSETVVKIVQGVEGYSLKSLKDHLTLAHDVIERVENNKSKQNYIHAMLKEFVKKFDDHLTPGDLGEII 171
BLAST of mRNA_H-elongata_contig65144.14105.1 vs. uniprot
Match: A0A1Z5JPF2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPF2_FISSO) HSP 1 Score: 72.0 bits (175), Expect = 7.740e-12 Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 172 TAEQRRMRDRNRVEEADNELTNDLFGGDGNRKGAAGGIAS---LSLKNMQDHMKLAIELCEKMESSKPAH-VTGFFKEMITKLSSNMTTDGMTDVVNHLVVFRDEKRQAEER 495
T ++RR +R R+E ADNELT+DLFG D + A G A+ + LK+++DH+K A ++ E M+ H + FFKE +T + D +T+++ L V ++EK QA +R
Sbjct: 95 TPDERRQLERQRIEAADNELTDDLFGADNTKNKATGAAAAGDVVVLKDLKDHLKHARKVAEAMKKHGNVHFASAFFKECVTSSKDVLDDDAVTELIKTLNVIKNEKVQAAKR 206
BLAST of mRNA_H-elongata_contig65144.14105.1 vs. uniprot
Match: B7G7B8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7B8_PHATC) HSP 1 Score: 65.5 bits (158), Expect = 2.010e-9 Identity = 45/119 (37.82%), Postives = 72/119 (60.50%), Query Frame = 1
Query: 178 EQRRMRDRNRVEEADNELTNDLFGGDGNR--KGAAGGIASLS-----LKNMQDHMKLAIELCEKMESSKPAHVTG-FFKEMITKLSSNMTTDGMTDVVNHLVVFRDEKRQAEERIAAAK 510
E RRM+ R +VEEADN LT+DLFGG + KGA GG A+ + +K+++DH+K A ++ E M+ H+ FFKE++ + + D +T+++ V ++EK QA +R+ K
Sbjct: 99 ELRRMKQR-QVEEADNALTDDLFGGVDAKAGKGATGGAAAAAGDKVIMKDVKDHLKHARKVAECMQGHGKIHLAAAFFKELLQQSKDVLDDDAITEIIKTCNVIKNEKVQAAKRVTKVK 216
BLAST of mRNA_H-elongata_contig65144.14105.1 vs. uniprot
Match: A0A6V1PD14_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PD14_HETAK) HSP 1 Score: 63.2 bits (152), Expect = 1.330e-8 Identity = 38/130 (29.23%), Postives = 71/130 (54.62%), Query Frame = 1
Query: 157 LQLSETAEQRRMRDRNRVEEADNELTNDLFGGDGNR--------------------KGAAGGIASLSLKNMQDHMKLAIELCEKMESSKPAHVTGFFKEMITKLSSNMTTDGMTDVVNHLVVFRDEKRQA 486
+Q +ET E+RR+R+R +EEAD+ELT +L G G K G+ +L++ +++D M A +L +++ + HV FFKEM+ + ++TTD +++++ V +++K +A
Sbjct: 83 IQANETDEERRIRERREIEEADHELTEELLSGAGAXXXXXXXXXXXXXXXXXXPATKKQEAGLGALAMDSLEDFMTTAAKLAQRLNGAPNHHVLAFFKEMLRGSTESLTTDDVSELIALANVIKNDKVKA 212
BLAST of mRNA_H-elongata_contig65144.14105.1 vs. uniprot
Match: A0A6T7HVD2_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7HVD2_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 4.010e-6 Identity = 44/142 (30.99%), Postives = 82/142 (57.75%), Query Frame = 1
Query: 127 ARIAAEIESRLQLSETAEQRRMRDRNRVEEADNELTNDLFGGDGNRKGAAGGIASLS----------LKNMQDHMKLAIELCEKMESSKPAHVTG-FFKEMITKLSSNMTTDGMTDVVNHLVVFRDEKRQAEERIAAAKANV 519
AR A E+E+ ++ + T E+RR+ + R+E+AD+ LT+DLFGG +R G G + + S LK+++DH+K A ++ + +++ H+ F KE+I + S + +T++++ V ++EK +AA+K V
Sbjct: 84 ARKAIELEADMEANMTIEERRLLAKQRIEDADHALTDDLFGGV-DRSGPVGVVDAGSKAMGAGDTVVLKDLKDHLKHARKVGQCLKAHGKIHLAAAFLKEVIQESSDALDDGAITEIISICNVIKNEK------VAASKKKV 218
BLAST of mRNA_H-elongata_contig65144.14105.1 vs. uniprot
Match: A0A6U5PFI3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5PFI3_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 3.440e-5 Identity = 38/128 (29.69%), Postives = 73/128 (57.03%), Query Frame = 1
Query: 127 ARIAAEIESRLQLSETAEQRRMRDRNRVEEADNELTNDLFGGDGNRKGAAGGIA----SLSLKNMQDHMKLAIELCEKMESSKPAHV-TGFFKEMITKLSSNMTTDGMTDVVNHLVVFRDEKRQAEER 495
AR A E+E+ ++ + T ++ + R ++E+ADN LT+DLFG NR A G ++ +K+++DH+K A ++ + + + K H+ T F KE I + + +++++ V ++EK Q +R
Sbjct: 85 ARKAMELEAEMEANMTPDELKKLKRKQIEDADNALTDDLFGTVDNRSKATGTSQGAGDTVVMKDLKDHLKHAKKVGQCIRTHKNVHLATAFLKEAIQECKDVLDDAAISELIKTCNVIKNEKVQNSKR 212
BLAST of mRNA_H-elongata_contig65144.14105.1 vs. uniprot
Match: A0A7R9WM26_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM26_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 6.170e-5 Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 1
Query: 196 DRNRVEEADNELTNDLFGGDGNRKGAA----GGIASLSLKNMQDHMKLAIELCEKMES-SKPAHVTGFFKEMITKLSSNMTTDGMTDVVNHLVVFRDEKRQAEER 495
+R RVE+ADN L ++LFGG G +KGAA G L+L ++DH+K A + ++ K T F +E+I + + +++++ V ++EK QA++R
Sbjct: 100 ERKRVEDADNALADELFGGAGAKKGAAATTKGAGDQLALMTLKDHLKHAKVVSAALKKHGKTLLATTFLREVIQGSKDTLDVNAISELITACNVIKNEKIQADKR 204 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65144.14105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65144.14105.1 >prot_H-elongata_contig65144.14105.1 ID=prot_H-elongata_contig65144.14105.1|Name=mRNA_H-elongata_contig65144.14105.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp PSTCVLTGHRQEEEEPDKSAVAHGTAPKMSTTKAAKAEAEKEARIAAEIEback to top mRNA from alignment at H-elongata_contig65144:1223..3308+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65144.14105.1 ID=mRNA_H-elongata_contig65144.14105.1|Name=mRNA_H-elongata_contig65144.14105.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2086bp|location=Sequence derived from alignment at H-elongata_contig65144:1223..3308+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65144:1223..3308+ >mRNA_H-elongata_contig65144.14105.1 ID=mRNA_H-elongata_contig65144.14105.1|Name=mRNA_H-elongata_contig65144.14105.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig65144:1223..3308+ (Himanthalia elongata Himel1 dioecious)back to top |