prot_H-elongata_contig6512.14102.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6512.14102.1
Unique Nameprot_H-elongata_contig6512.14102.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length452
Homology
BLAST of mRNA_H-elongata_contig6512.14102.1 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.450e-59
Identity = 175/391 (44.76%), Postives = 198/391 (50.64%), Query Frame = 0
Query:  140 GGRPPLVRKRSLTVALDADPGGPALCPSPRGRRRSVDKALDTKDGV-------PDVSSAGV-ESPSHPPRVLPAPAVGNNGVAVVGGSSGGSGGGCFSPHPAYPSPRAGIICGVGGLVGGVGPRECSLSSPPHDRFHHH-PGHTM-------------------------------------DVEWIPNETTHTAALSASTAATPSPVPSASSA--------LTGSGLGCPQSPFAPSPGHEYLRIGSM--RGAPPQSPSPRRAPPSPAQAPGSAGLRRPGTRRLDGRRLARRV--HNLGAGKGAYVGGGAGEIISGGGGGVGGTYESDYD--------------------SDLSDLSGYSAVGSLERQLQQDTFFELDEALWVVVTRREV 452
            GGRPPLVRKRSLTVA+DADPGGP +CPSPRGRRRSV+   DTKD         PD ++  + ESPS PPR++   AVGN+GVAVVGG  G     CFSP  +YPS         G   GG   RE  L S  HD       GH M                                     DVEWIPNE      +      TPSPV S +SA           + +G P SPF PSPG EY R+G +  RG+   SPSPRRAPPSPA APGSAG+RR GTRRL G R A R      G  KG YVG G                                         S++S  S YSA+GSLERQLQQDTFFELDE+LW VVTRRE+
Sbjct:  304 GGRPPLVRKRSLTVAMDADPGGPVMCPSPRGRRRSVEGVFDTKDSCTSGGGSNPDGTTTRLLESPSRPPRLM---AVGNSGVAVVGGGVGA----CFSPLVSYPSSH-------GDRAGGG--REYPLRSQAHDNLSVRVSGHAMAGGGSNVNPVETKTDSSSAGVGLETAAAGACVSKNPMDVEWIPNENAQAGGI----LPTPSPVTSVASAPPAMVQPSANANAMGRPPSPFPPSPGREYRRVGGVLSRGST-HSPSPRRAPPSPAHAPGSAGMRRRGTRRLSGGRSATRGVRSRPGVSKGVYVGAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEMSAYSNYSAMGSLERQLQQDTFFELDESLWRVVTRREI 673          
BLAST of mRNA_H-elongata_contig6512.14102.1 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.610e-52
Identity = 156/343 (45.48%), Postives = 178/343 (51.90%), Query Frame = 0
Query:  155 LDADPGGPALCPSPRGRRRSVDKALDTKDGV-------PDVSSAGV-ESPSHPPRVLPAPAVGNNGVAVVGGSSGGSGGGCFSPHPAYPSPRAGIICGVGGLVGGVGPRECSLSSPPHDRFHHHPGHTMDVEWIPNETTHTAALSASTAATPSPVPSASSALTGSGLGCPQSPFAPSPGHEYLRIGSM--RGAPPQSPSPRRAPPSPAQAPGSAGLRRPGTRRLDGRRLARRV--HNLGAGKGAYVGGGAGEIISGGGGGVGGT------------------------------YESDYDSDLSDLSGYS---AVGSLERQLQQDTFFELDEALWVVVTRREV 452
            +DADPGGPA+CPSPRGRRRSV+   DTKD         PD ++  + ESPS PPR++   AVGNNGVAVVGG  GG  G CFSP  +YPS       G          RE  L S  HD+F                               S  PSA++    + +G P SPF PSPG EY R G +  RG+   SPSPRRAPPSPA APGSAG+RR GTRRL G R A R      G  KG YVG G                                             YESDYDSDLS++S YS   A+GSLERQLQQDTFFELDE+LW VVTRRE+
Sbjct:    1 MDADPGGPAMCPSPRGRRRSVEGVFDTKDSSTSGGGSNPDGTTTRLLESPSRPPRLM---AVGNNGVAVVGGGVGGGVGTCFSPLVSYPSSHGDRASGG---------REYPLRSQAHDKF-------------------------------SVTPSANA----NAMGRPPSPFPPSPGREYRRAGGVLSRGST-HSPSPRRAPPSPAHAPGSAGMRRRGTRRLSGGRSAPRGVRSRPGVSKGVYVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYESDYDSDLSEMSAYSNYSAMGSLERQLQQDTFFELDESLWRVVTRREI 295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6512.14102.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2W7_9PHAE1.450e-5944.76MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G0Z5_ECTSI1.610e-5245.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6512contigH-elongata_contig6512:352..1707 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6512.14102.1mRNA_H-elongata_contig6512.14102.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6512 352..1707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6512.14102.1 ID=prot_H-elongata_contig6512.14102.1|Name=mRNA_H-elongata_contig6512.14102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=452bp
GGGSSSGGISGGVARVRIRGGGIDITSLLSEDTDFERGPSSREDRALARG
DPSVHHPGGGDSGDGVWAGESTSAGEASSSTSTGYQRQDSTGSVSSVGAG
EFTYPSIGGASGNGGGISRSGTPSSNSHTGSEHFRGDGPGGRPPLVRKRS
LTVALDADPGGPALCPSPRGRRRSVDKALDTKDGVPDVSSAGVESPSHPP
RVLPAPAVGNNGVAVVGGSSGGSGGGCFSPHPAYPSPRAGIICGVGGLVG
GVGPRECSLSSPPHDRFHHHPGHTMDVEWIPNETTHTAALSASTAATPSP
VPSASSALTGSGLGCPQSPFAPSPGHEYLRIGSMRGAPPQSPSPRRAPPS
PAQAPGSAGLRRPGTRRLDGRRLARRVHNLGAGKGAYVGGGAGEIISGGG
GGVGGTYESDYDSDLSDLSGYSAVGSLERQLQQDTFFELDEALWVVVTRR
EV
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