mRNA_H-elongata_contig118278.1410.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118278.1410.1
Unique NamemRNA_H-elongata_contig118278.1410.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118278.1410.1 vs. uniprot
Match: D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.130e-16
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 DGLVARGAAFATTGRLRQVTQDLSRALSLNPQNDNASSYLQETRR 135
            DGLVARGAAFATTGRLRQ  QDLSRALS+NPQN NASSYL+ETRR
Sbjct:  317 DGLVARGAAFATTGRLRQAVQDLSRALSVNPQNGNASSYLKETRR 361
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118278.1410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK49_ECTSI4.130e-1688.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118278contigH-elongata_contig118278:8..145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog2880.D7FK49
Preferred nameTTC14
KEGG koko:K17908
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.TPR repeat
EggNOG OGs28H66@1,2QPJ1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.2582219-CDS-H-elongata_contig118278:7..1451622929690.2582219-CDS-H-elongata_contig118278:7..145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118278 8..145 +
1691679120.0672638-CDS-H-elongata_contig118278:7..1451691679120.0672638-CDS-H-elongata_contig118278:7..145Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118278 8..145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118278.1410.1prot_H-elongata_contig118278.1410.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118278 8..145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118278.1410.1

>prot_H-elongata_contig118278.1410.1 ID=prot_H-elongata_contig118278.1410.1|Name=mRNA_H-elongata_contig118278.1410.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
DGLVARGAAFATTGRLRQVTQDLSRALSLNPQNDNASSYLQETRR*
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mRNA from alignment at H-elongata_contig118278:8..145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118278.1410.1 ID=mRNA_H-elongata_contig118278.1410.1|Name=mRNA_H-elongata_contig118278.1410.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig118278:8..145+ (Himanthalia elongata Himel1 dioecious)
GACGGTTTGGTTGCACGAGGAGCCGCGTTTGCCACGACGGGTCGGTTACG
ACAAGTAACGCAAGACCTATCGAGAGCGCTCAGCCTCAACCCGCAAAACG
ACAATGCATCGAGCTACCTTCAGGAAACGCGGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig118278:8..145+

>mRNA_H-elongata_contig118278.1410.1 ID=mRNA_H-elongata_contig118278.1410.1|Name=mRNA_H-elongata_contig118278.1410.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig118278:8..145+ (Himanthalia elongata Himel1 dioecious)
GACGGTTTGGTTGCACGAGGAGCCGCGTTTGCCACGACGGGTCGGTTACG
ACAAGTAACGCAAGACCTATCGAGAGCGCTCAGCCTCAACCCGCAAAACG
ACAATGCATCGAGCTACCTTCAGGAAACGCGGAGGTAAGACGGTTTGGTT
GCACGAGGAGCCGCGTTTGCCACGACGGGTCGGTTACGACAAGTAACGCA
AGACCTATCGAGAGCGCTCAGCCTCAACCCGCAAAACGACAATGCATCGA
GCTACCTTCAGGAAACGCGGAGGTAA
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