mRNA_H-elongata_contig65102.14099.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65102.14099.1
Unique NamemRNA_H-elongata_contig65102.14099.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A6H5KUH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH5_9PHAE)

HSP 1 Score: 370 bits (951), Expect = 8.580e-123
Identity = 178/254 (70.08%), Postives = 215/254 (84.65%), Query Frame = 1
Query:    4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLLLVMEEVPICQALPQPG 765
            +A+EDHRLITGI+GMIQDTASLAVFI+SIC RS NPTG+K ++YQFYTSPEDTV+G  A+MC+WLMKT+NA ECGA C+VFSHGML+A F+PD+RI +LE+VFDVM  MQQLQRA+G G  ++ PNTL  A Q S+QARLV SA PPY ITH NEAWTAL+GHT E+AK+ P TL+NGPAEAN+   L++LVQTC+G++ KRA M D+ VVTRD+RRL V+VQ YPLGT DG+TTHLLLVMEE+P+C  LPQ G
Sbjct:  334 EAQEDHRLITGIEGMIQDTASLAVFIKSICPRSRNPTGRK-LKYQFYTSPEDTVVGSNALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQARLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRRLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTG 586          
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: D7FRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN7_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 1.020e-91
Identity = 131/195 (67.18%), Postives = 161/195 (82.56%), Query Frame = 1
Query:  181 VMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLLLVMEEVPICQALPQPG 765
            +MC+WLMKT+NA ECGA C+VFSHGML+A F+PD+RI +LE+VFDVM  MQQLQRA+G G  ++ PNTL  A Q S+QARLV SA PPY ITH NEAWTAL+GHT E+AK+ P TL+NGPAEAN+   L++LVQTC+G++ KRA M D+ VVTRD+R+L V+VQ YPLGT DG+TTHLLLVMEE+P+C  LPQ G
Sbjct:   41 LMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQARLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTG 235          
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A836CN81_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN81_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.120e-45
Identity = 97/236 (41.10%), Postives = 135/236 (57.20%), Query Frame = 1
Query:   22 RLITGIDGMIQDTASLAVFIQSI--CRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESA-LQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMA-DVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLL 717
            R+I GID MI D ASLA+ ++S+  CR S     +++++ Q+Y  PED +     + CRW+++TENA  CGA CE  + GML+A+++P H++  LEL FDVMGFMQQLQRA G   F++ PNTL  A       AR + +A+PPY I HA+ AW  L G+ +E+A      LL GPA   +       V   +GA   R   + +V   T+        +  YPL T DG  TH L
Sbjct:  222 RMIVGIDAMIADVASLALMVESVGRCRPS-----ERRVQVQYYAGPEDAITSGDMLSCRWMLRTENAAACGALCECHAQGMLRARYSPSHKLAHLELAFDVMGFMQQLQRASGLEDFRVVPNTLAMAQAPCDADARFITTAEPPYLIVHASPAWCRLCGYASEEAVGRTAALLQGPATDRA------AVARFMGAVRARHCCSMEVVNYTKAGVPFANYIVAYPLST-DGRVTHYL 445          
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A7S3UTR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTR3_HETAK)

HSP 1 Score: 165 bits (417), Expect = 2.030e-44
Identity = 97/252 (38.49%), Postives = 137/252 (54.37%), Query Frame = 1
Query:   13 EDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDH---------RINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGA-SFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTT-HLLLVMEEV 735
            ++ R + G+DG+++DTASL V  +S+ R    P   + +  ++Y + EDTV+   A+MCRW+++T NAV+CG  CE+++HGML+A+F             ++ +L LVFDVM FMQQLQR  G   F I PNT+  A Q + +ARLVC+A+PPY + H N AW AL G   E+    PL  L+G       G  +S+V         +RA     R  +R        V  YPL         H LLV  EV
Sbjct:  234 QNMREVRGVDGVVKDTASLGVLTKSLGR----PGNSEDVALRYYVAKEDTVVVGRALMCRWMLRTVNAVQCGGLCELYNHGMLRAEFGEPSSDGPPGGGCKLRRLRLVFDVMSFMQQLQRCSGKACFHIVPNTVAMAKQGADEARLVCAAQPPYAVAHVNRAWQALFGQGLEEVYGRPLAFLDG----GGPGAAESVVARADDQFPLQRACSFLARANSRYRMAFPARVCAYPLAADPPRRPGHYLLVFHEV 477          
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A7R9ZM03_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZM03_9STRA)

HSP 1 Score: 136 bits (343), Expect = 7.230e-35
Identity = 92/255 (36.08%), Postives = 126/255 (49.41%), Query Frame = 1
Query:    4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAK-VCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLLLVMEEV-PICQALPQP 762
            Q  +  R I GIDGM+ DTASL V + S+  RS  P    + RY   T  E+ V+    +M RW+M TENA +CGA+ EV   GML  KF   H+I  LEL+FDVM  M QL++A G   F + PNT+++  +      L+  A  PY I   N+ W  +  +  EQ        +L G  EA     +++L+       +KR A A V    +   R       +PL T D   TH L++   V PI   LP P
Sbjct:   79 QVSKCQRTILGIDGMMADTASLHVLLNSLVDRSRYPNATIKFRYTLVT--EEAVVAGNQMMARWVMTTENAAQCGARMEVTKQGMLCCKFNSAHKIIGLELMFDVMALMLQLKQAAGSDTFSVVPNTVQTCQRNFDMPMLMMLADEPYTIVQVNKLWENMSNYQAEQVVGKSSCRILEG--EATDPTAVEALINEI---RYKRPASAMVVHYKKTGERFRNFFLAFPLST-DSRITHYLMLSTHVEPIATVLPTP 325          
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A7S2A2E8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A2E8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.990e-33
Identity = 86/236 (36.44%), Postives = 123/236 (52.12%), Query Frame = 1
Query:    4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTH 711
            Q  +  R I GIDGM+ DTASL V + S+  RS  P    Q RY   T  ED+V+    +M RW+M T NA ECGA+ EV   GML  KF   H+I  LEL+FDVM FM QL+++ G   F + PNT+++  +      ++  A+ PY I   N+ W  + G+  E   V   +      +  +  ++++L+ +     +KR A A +   TR  RR    +  YPL T D   TH
Sbjct:  327 QVSKCQRTILGIDGMMSDTASLHVLLNSLVDRSKYPNATVQFRYTLVT--EDSVVAGNQMMARWVMSTLNATECGARMEVSKQGMLCCKFNSAHKIIGLELMFDVMAFMLQLKQSTGSDSFSVVPNTVQTCQRPFDTPMVMTLAERPYTIVQVNKLWEEVTGYRAEDV-VGKASCRELQGQETNRMDVENLMSS---VRYKRPASAVLVNYTRSGRRFRNYLNVYPLST-DSKITH 555          
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A7S1D1F4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D1F4_CYCTE)

HSP 1 Score: 134 bits (338), Expect = 4.200e-33
Identity = 89/245 (36.33%), Postives = 119/245 (48.57%), Query Frame = 1
Query:    4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAK-VCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLLLVMEEV 735
            Q  +  R I GIDGMI DTASL V + S+  RS  P    Q RY   T  ED V+    +M RW+M T NA + GA+ EV   GML  KF   H+I  LEL+FDVM FM QL++A G   F + PNT+++  ++     ++  A+ PY I   N+ W  + G   E         +L G     S  E+           FKR A A +   TR  +R    +  YPL T D   TH + +   V
Sbjct:  120 QVSKCQRTILGIDGMISDTASLHVLLNSLIDRSRYPAASIQFRYTLVT--EDAVVAGNQMMARWVMSTVNATQFGARMEVAKQGMLCCKFNSAHKIIGLELMFDVMAFMLQLKQAAGSETFSVVPNTVQTCQRSFSSPMVMTLAERPYTIVQVNKLWEDMTGFRAEDVVGKASCRILQGQETDRSAVEV-----LMSSVRFKRPASASLLNYTRAGKRFRNYLNVYPLST-DSKITHYVSLTAHV 356          
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A6U2CPD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2CPD3_9STRA)

HSP 1 Score: 129 bits (323), Expect = 9.550e-33
Identity = 67/166 (40.36%), Postives = 98/166 (59.04%), Query Frame = 1
Query:    4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTE 501
            Q     R + GIDGMI D+ASL V + S+  RS +P+    IR+Q+    ED V+    +M RW+M T NAV+CGA+ EV   GML  KF   ++I  LEL+FDVM FM QL++A G   F + PNT+++  +      ++ +A+ PY I   N+ W ++ G+  E
Sbjct:   80 QVARCQRTVMGIDGMISDSASLHVMLNSLVDRSRHPSAT--IRFQYTIVTEDAVVAGNCMMARWVMTTLNAVKCGARMEVSKRGMLCCKFNSSNKITGLELMFDVMAFMLQLKQASGTDSFAVVPNTVQTCQRPFDSPMVMTAAERPYTIKQVNKLWESMTGYAAE 243          
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: W7TPI1_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPI1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.600e-32
Identity = 78/207 (37.68%), Postives = 116/207 (56.04%), Query Frame = 1
Query:    1 GQAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPG-AVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAP-DHRINQLELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAK----------VCPLTLLNGPAEANSDGELDSLVQT 585
            G   +  R + GID  I+DTAS  V I S+ R     T ++++R QFY+  +  V+G G  +MCRW M++ENAV CG Q E+   GML+A+F P + ++ +L ++FDVMG MQQL+R  GG  FQ  P+TL+ A   + + R+V + + P+ I   NEAW    G T E  +          +CP+    G  E    GE ++ V +
Sbjct:  357 GDVEQHARYVRGIDATIRDTASFTVLIDSLSR-----TYRERVRVQFYSEADYIVIGTGPTLMCRWTMRSENAVACGCQTELELCGMLQAEFEPREVKLKRLNVMFDVMGLMQQLRRMGGGALFQTAPSTLQMAEDPTEEPRIVFALQVPFRIRSINEAWMMHYGVTVEDCQNRCVVLERNPLCPVPGAGGGREGRGAGEAEAPVDS 558          
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Match: A0A7S2L2B1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L2B1_9STRA)

HSP 1 Score: 132 bits (331), Expect = 2.750e-31
Identity = 87/241 (36.10%), Postives = 125/241 (51.87%), Query Frame = 1
Query:    4 QAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTSPEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQLELVFDVMGFMQQLQRAMGGGGFQ--ITPNTLESALQTSRQARLVCSAKPPYWITHANEAWTALIGHTTEQAK-VCPLTLLNGPAEANSDGELDSLVQTCVGASFKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLL 717
            Q     R I G+D M+ D AS AVF+ SI  R   P G+ +  Y+  T  ++T +    +M RW M+T NA +CGA  E+  +GML  KF   H+I  LE++FDVM FM Q++ AMG   F   + PNT+++  +      ++ SA  PY IT  N+ W  L G+ +E+        +L G    N   ELD L++  +   FKR + A V   T+  RR    +  YPL T D   +H L
Sbjct:  482 QVSNCQRTIVGVDAMMNDVASNAVFLDSIVNRQRYPKGKIKFHYKLVT--DETPIAGNQLMARWSMETLNAKQCGAHNELHQNGMLFCKFNSSHKIVSLEMMFDVMAFMLQVKMAMGYDNFNDVVIPNTVQTCTKEFYYPMVMTSADRPYTITKVNQRWEKLTGYKSEEVVGKSSCLILQGNDTTNE--ELDLLMRPVL---FKRPSCAMVTNYTKSGRRYRGYLMLYPLST-DSIISHYL 714          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65102.14099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUH5_9PHAE8.580e-12370.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRN7_ECTSI1.020e-9167.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CN81_9STRA2.120e-4541.10BZIP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3UTR3_HETAK2.030e-4438.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9ZM03_9STRA7.230e-3536.08Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2A2E8_9STRA1.990e-3336.44Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S1D1F4_CYCTE4.200e-3336.33Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A6U2CPD3_9STRA9.550e-3340.36Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
W7TPI1_9STRA3.600e-3237.68Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A7S2L2B1_9STRA2.750e-3136.10Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65102contigH-elongata_contig65102:1417..3188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue1.3e-30
Seed eggNOG ortholog2850.Phatr50039
EggNOG free text desc.basic region leucin zipper
EggNOG OGs2CY5M@1,2S26N@2759,2XA72@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_002360.1
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size765
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65102.14099.1prot_H-elongata_contig65102.14099.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65102 1417..3188 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931037.666936-CDS-H-elongata_contig65102:1416..16471622931037.666936-CDS-H-elongata_contig65102:1416..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65102 1417..1647 -
1691679672.174456-CDS-H-elongata_contig65102:1416..16471691679672.174456-CDS-H-elongata_contig65102:1416..1647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65102 1417..1647 -
1622931037.6845996-CDS-H-elongata_contig65102:1821..19711622931037.6845996-CDS-H-elongata_contig65102:1821..1971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65102 1822..1971 -
1691679672.1856556-CDS-H-elongata_contig65102:1821..19711691679672.1856556-CDS-H-elongata_contig65102:1821..1971Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65102 1822..1971 -
1622931037.7045696-CDS-H-elongata_contig65102:2250..24541622931037.7045696-CDS-H-elongata_contig65102:2250..2454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65102 2251..2454 -
1691679672.194003-CDS-H-elongata_contig65102:2250..24541691679672.194003-CDS-H-elongata_contig65102:2250..2454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65102 2251..2454 -
1622931037.7232163-CDS-H-elongata_contig65102:2640..26971622931037.7232163-CDS-H-elongata_contig65102:2640..2697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65102 2641..2697 -
1691679672.2043073-CDS-H-elongata_contig65102:2640..26971691679672.2043073-CDS-H-elongata_contig65102:2640..2697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65102 2641..2697 -
1622931037.7433493-CDS-H-elongata_contig65102:3065..31881622931037.7433493-CDS-H-elongata_contig65102:3065..3188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65102 3066..3188 -
1691679672.218101-CDS-H-elongata_contig65102:3065..31881691679672.218101-CDS-H-elongata_contig65102:3065..3188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65102 3066..3188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65102.14099.1

>prot_H-elongata_contig65102.14099.1 ID=prot_H-elongata_contig65102.14099.1|Name=mRNA_H-elongata_contig65102.14099.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
GQAREDHRLITGIDGMIQDTASLAVFIQSICRRSLNPTGQKQIRYQFYTS
PEDTVMGPGAVMCRWLMKTENAVECGAQCEVFSHGMLKAKFAPDHRINQL
ELVFDVMGFMQQLQRAMGGGGFQITPNTLESALQTSRQARLVCSAKPPYW
ITHANEAWTALIGHTTEQAKVCPLTLLNGPAEANSDGELDSLVQTCVGAS
FKRAAMADVRVVTRDMRRLTVSVQGYPLGTVDGSTTHLLLVMEEVPICQA
LPQPG
back to top

mRNA from alignment at H-elongata_contig65102:1417..3188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65102.14099.1 ID=mRNA_H-elongata_contig65102.14099.1|Name=mRNA_H-elongata_contig65102.14099.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1772bp|location=Sequence derived from alignment at H-elongata_contig65102:1417..3188- (Himanthalia elongata Himel1 dioecious)
GGACAGGCTAGAGAAGACCACCGCCTTATCACCGGCATCGACGGTATGAT CCAAGACACGGCATCCCTGGCCGTTTTCATCCAATCCATCTGCCGCCGCT CCCTGAACCCGACAGGCCAAAAGGTCTGCTCAGTCGACACAGCGCTTGGA TAGTTATATACATATACCATGTACCAACGGTATCACTTCCGGGTACATGC CAAGTATATGCTCAAGGGCGCACCTGCATGCAAGCCACAGCTTAAACCCA CGTTTTAATTGTTTCTGTTTTGGTCCGATTCTGCCGATCATAGATCAACG ACGTGCAACCTTTTAGATACGATCGTACGTCTCGGGGACGCCCATCTGGC CGCCCGTGAGACGGGTAGTCATCGTTCTTGCCCTCTGCCCTCTTGCCCCC ATTGTTCGTTTTGTTCATGCCTTTCGGAGGCACCCTTTACCCCTTTCACA ATCCAACCAACCACTGTGTGTCTGCGCGCGCCTATGGGAAGCAGATAAGG TATCAGTTCTACACGTCCCCGGAGGACACGGTGATGGGGCCCGGTGCGGT GAGAATGCCACACAGCTTCGCGGCATTCGAATATGTTCAGTTCTTAGGCT CACGAGAGCGCAGCGGTTCGTAGGGAGTCCAACCGTGATCAGGCCAGGAG GCGTTTCCCCTCTCACGCAGAAGTGGTTAGATTGGAAACGATACCGATCT CATCGCTCGTCCCACCGCCATTCATTTTTTCTAGGTCATGTGCCGCTGGC TCATGAAAACGGAGAACGCGGTGGAGTGTGGTGCGCAGTGCGAGGTGTTC TCCCACGGTATGCTGAAAGCAAAGTTTGCGCCTGATCACCGAATAAATCA GCTCGAGCTCGTGTTCGACGTGATGGGTTTCATGCAGCAGCTGCAACGGG CTATGGGCGGAGGAGGATTCCAGATAACTCCCAACACGGTGAGAGATGGC TTGGTGCTTTGCCACCTGGTTAGACCAGACGGCGCCAGAGACCGACGGGG TTGTAAAGTTAACGGGATCCTCGGGGTGACTATCTGCGATGGATACCTGC GGAGCGTGCTCCGGAAAGGAGTGCTGAACGGCGAAATATTGATCGCGGAC ATGTACACTGTGTCATCTGAAAACTCGAGGGCAGTGCGTGAATGATTGGT TGTTGAAAATCACCCGTGGTTCTCTCTTCTCTTACCCCGCTGTGATGGAA CGGTTTGATGTCGATAGTTGGAGTCCGCGTTACAGACGTCCCGACAGGCG CGACTGGTGTGCTCCGCCAAACCACCGTACTGGATTACACACGCGAACGA GGCTTGGACGGCGCTCATAGGGCACACCACGGAGCAGGCCAAGGTTTGCC CTCTCACCCTTCTTAACGTGAGCGCTGCCCGCCAGCCGAAAAACACCGGT AGTAGTTGATCTTCTCCTGGAGAGAGGCTTCATCGGCGTCTGTGGCATCG GTCTCTTTTTCTTCCCCCCTTGGAGTACAAATGTGCGACGCGCACTTTTT TGAAGCGTGTTTGCTTCGCCCTCGTTCGAGGTTTCGTGCAGGGTCCTGCT GAGGCCAACAGCGACGGCGAGCTGGACTCTTTGGTTCAGACGTGCGTAGG CGCGAGCTTCAAGCGAGCGGCGATGGCCGACGTGCGCGTCGTCACTCGAG ACATGCGGCGCCTGACGGTATCCGTACAGGGGTATCCTTTGGGCACCGTA GACGGGAGCACAACACACTTGTTGCTCGTGATGGAAGAGGTGCCCATCTG CCAGGCACTGCCGCAACCAGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig65102:1417..3188-

>mRNA_H-elongata_contig65102.14099.1 ID=mRNA_H-elongata_contig65102.14099.1|Name=mRNA_H-elongata_contig65102.14099.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig65102:1417..3188- (Himanthalia elongata Himel1 dioecious)
GGACAGGCTAGAGAAGACCACCGCCTTATCACCGGCATCGACGGTATGAT
CCAAGACACGGCATCCCTGGCCGTTTTCATCCAATCCATCTGCCGCCGCT
CCCTGAACCCGACAGGCCAAAAGGGACAGGCTAGAGAAGACCACCGCCTT
ATCACCGGCATCGACGGTATGATCCAAGACACGGCATCCCTGGCCGTTTT
CATCCAATCCATCTGCCGCCGCTCCCTGAACCCGACAGGCCAAAAGCAGA
TAAGGTATCAGTTCTACACGTCCCCGGAGGACACGGTGATGGGGCCCGGT
GCGCAGATAAGGTATCAGTTCTACACGTCCCCGGAGGACACGGTGATGGG
GCCCGGTGCGGTCATGTGCCGCTGGCTCATGAAAACGGAGAACGCGGTGG
AGTGTGGTGCGCAGTGCGAGGTGTTCTCCCACGGTATGCTGAAAGCAAAG
TTTGCGCCTGATCACCGAATAAATCAGCTCGAGCTCGTGTTCGACGTGAT
GGGTTTCATGCAGCAGCTGCAACGGGCTATGGGCGGAGGAGGATTCCAGA
TAACTCCCAACACGGTCATGTGCCGCTGGCTCATGAAAACGGAGAACGCG
GTGGAGTGTGGTGCGCAGTGCGAGGTGTTCTCCCACGGTATGCTGAAAGC
AAAGTTTGCGCCTGATCACCGAATAAATCAGCTCGAGCTCGTGTTCGACG
TGATGGGTTTCATGCAGCAGCTGCAACGGGCTATGGGCGGAGGAGGATTC
CAGATAACTCCCAACACGTTGGAGTCCGCGTTACAGACGTCCCGACAGGC
GCGACTGGTGTGCTCCGCCAAACCACCGTACTGGATTACACACGCGAACG
AGGCTTGGACGGCGCTCATAGGGCACACCACGGAGCAGGCCAAGGTTTGC
CCTCTCACCCTTCTTAACTTGGAGTCCGCGTTACAGACGTCCCGACAGGC
GCGACTGGTGTGCTCCGCCAAACCACCGTACTGGATTACACACGCGAACG
AGGCTTGGACGGCGCTCATAGGGCACACCACGGAGCAGGCCAAGGTTTGC
CCTCTCACCCTTCTTAACGGTCCTGCTGAGGCCAACAGCGACGGCGAGCT
GGACTCTTTGGTTCAGACGTGCGTAGGCGCGAGCTTCAAGCGAGCGGCGA
TGGCCGACGTGCGCGTCGTCACTCGAGACATGCGGCGCCTGACGGTATCC
GTACAGGGGTATCCTTTGGGCACCGTAGACGGGAGCACAACACACTTGTT
GCTCGTGATGGAAGAGGTGCCCATCTGCCAGGCACTGCCGCAACCAGGTG
GTCCTGCTGAGGCCAACAGCGACGGCGAGCTGGACTCTTTGGTTCAGACG
TGCGTAGGCGCGAGCTTCAAGCGAGCGGCGATGGCCGACGTGCGCGTCGT
CACTCGAGACATGCGGCGCCTGACGGTATCCGTACAGGGGTATCCTTTGG
GCACCGTAGACGGGAGCACAACACACTTGTTGCTCGTGATGGAAGAGGTG
CCCATCTGCCAGGCACTGCCGCAACCAGGT
back to top