mRNA_H-elongata_contig65093.14096.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Match: D7FKC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC7_ECTSI) HSP 1 Score: 239 bits (611), Expect = 1.910e-70 Identity = 119/151 (78.81%), Postives = 135/151 (89.40%), Query Frame = 1
Query: 1 KVVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAVMVLANKEPRSSHAEDMNLSIQAISITTHVQLERRQGSGPRLLVELVDPNAALHLQAAGIRHVVSSAQLKLSVLGQSCLCPGWSAVVANLLESRAAIPPQV 453
+VVV+SP PP RI +LL PRYRG VTY+QGSPL DDSL KARVD+A+AVMVLA+K P SSHAEDM LS+QAIS+ THV+L+RRQG GPRLLVELVDPNAALHLQAAGI+HVVSSAQ+KLSVL QSCLCPGW+AVVANLLESRAA+P +V
Sbjct: 433 RVVVMSPKPPGPRIDALLEHPRYRGRVTYLQGSPLHDDSLLKARVDDASAVMVLADKAPPSSHAEDMGLSLQAISVMTHVELDRRQGCGPRLLVELVDPNAALHLQAAGIKHVVSSAQVKLSVLAQSCLCPGWAAVVANLLESRAALPAEV 583
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Match: A0A6H5LKR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKR1_9PHAE) HSP 1 Score: 239 bits (611), Expect = 1.910e-70 Identity = 119/151 (78.81%), Postives = 135/151 (89.40%), Query Frame = 1
Query: 1 KVVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAVMVLANKEPRSSHAEDMNLSIQAISITTHVQLERRQGSGPRLLVELVDPNAALHLQAAGIRHVVSSAQLKLSVLGQSCLCPGWSAVVANLLESRAAIPPQV 453
+VVV+SP PP RI +LL PRYRG VTY+QGSPL DDSL KARVD+A+AVMVLA+K P SSHAEDM LS+QAIS+ THV+L+RRQG GPRLLVELVDPNAALHLQAAGI+HVVSSAQ+KLSVL QSCLCPGW+AVVANLLESRAA+P +V
Sbjct: 445 RVVVMSPKPPGPRIDALLEHPRYRGRVTYLQGSPLHDDSLLKARVDDASAVMVLADKAPPSSHAEDMGLSLQAISVMTHVELDRRQGCGPRLLVELVDPNAALHLQAAGIKHVVSSAQVKLSVLAQSCLCPGWAAVVANLLESRAALPAEV 595
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Match: A0A7R9UDC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDC3_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.700e-39 Identity = 72/151 (47.68%), Postives = 102/151 (67.55%), Query Frame = 1
Query: 1 KVVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAVMVLANKEPRSSHAEDMNLSIQAISITTHVQLERRQGSGPRLLVELVDPNAALHLQAAGIRHVVSSAQLKLSVLGQSCLCPGWSAVVANLLESRAAIPPQV 453
+VV+LSP+ P++ I +++ P YR VTY++GSPL L +A V AA VMVL NK + +H EDM + ++A+S+ Q +RR GSGPR+ EL+ P A HL+ AG+RHVV + LKLS+L SCLCPG S ++ NL+ S + +PP V
Sbjct: 426 QVVILSPNEPTTPILAVIRNPAYRSKVTYLKGSPLNALDLARADVRTAAGVMVLVNKHSQETHVEDMGVVLRALSVANFCQEQRRNGSGPRVFTELIQPQATRHLRTAGLRHVVCTDALKLSLLAHSCLCPGLSTLLVNLMRSHSVMPPAV 576
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Match: A0A7S1GD92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD92_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.100e-25 Identity = 57/151 (37.75%), Postives = 92/151 (60.93%), Query Frame = 1
Query: 1 KVVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAVMVLANKEPRSSHAEDMNLSIQAISITTHVQLERRQGSGPRLLVELVDPNAALHLQAAGIRHVVSSAQLKLSVLGQSCLCPGWSAVVANLLESRAAIPPQV 453
KVVVLSP PS + SL+ RYR + Y++GSPL D+ + + V AAAV +LAN + AED +L+++ I++ V +LV+L+ P + L++ + G+ VV +L+LS++ QSCLCPG+S ++ NL+ S + P ++
Sbjct: 246 KVVVLSPHEPSEGLLSLMQSVRYRQRLVYLRGSPLNDEDMERCHVATAAAVFLLANNLAPNEEAEDASLTLKTIAVKKFVP------DDVTVLVQLMRPASKLNVNSVGVNLVVCQDELRLSLMAQSCLCPGFSTMIVNLVRSHSKPPVEL 390
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Match: A0A5B8MSS4_9CHLO (Calcium-activated potassium channel protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MSS4_9CHLO) HSP 1 Score: 95.1 bits (235), Expect = 7.460e-20 Identity = 47/154 (30.52%), Postives = 93/154 (60.39%), Query Frame = 1
Query: 1 KVVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAVMVLANKEPRSSHAEDMNLSIQAISITTHVQLERRQGSGPRLLVELVDPNAALH----LQAAGIRHVVSSAQLKLSVLGQSCLCPGWSAVVANLLESRAAIPPQ 450
KVV+LSP+ PS + +L +Y+ ++ YI+GS L++ L++ + + A VL+N+ ED + I+A+++ + R +++++++ P LH +Q + I +V ++K+S+LGQ+CLCPG+S ++ NL++S ++PP+
Sbjct: 332 KVVILSPEHPSDEMLGILRSTKYKANLIYIEGSCLQNKDLKRCDLSKSKACFVLSNQYCADPDEEDSSNIIRALAVK---RFARATQGDMQVILQIIRPENKLHFIASMQQSEIDQIVCINEIKMSMLGQNCLCPGFSTLIGNLIQSSDSVPPE 482
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Match: L1JCR4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JCR4_GUITC) HSP 1 Score: 90.1 bits (222), Expect = 4.170e-18 Identity = 51/147 (34.69%), Postives = 84/147 (57.14%), Query Frame = 1
Query: 1 KVVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAVMVLANKEPRSSHAEDMNLSIQAISITTHVQLERRQGSGPRLLVELVDPNAALHLQAAGIR----HVVSSAQLKLSVLGQSCLCPGWSAVVANLLES 429
KVV+L PS+ + SLL+ Y Y++GS L D L++A + N V +L +K AED + I+AISI +V RR G R++++L+ P HL + ++ ++K+++LG+SCLCPG+S +++NL+ S
Sbjct: 323 KVVILGNQVPSASLLSLLSSANYSLRTVYLEGSALVDKDLQRADIINCLCVFILCDKFAEDPFAEDSSNIIRAISIKKYVSA-RRPGEDIRIILQLLRPENRHHLNVSTCGGTDVQIICMDEIKMNLLGKSCLCPGFSTLISNLMIS 468
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Match: A0A7S0HTD1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HTD1_9CRYP) HSP 1 Score: 83.6 bits (205), Expect = 6.040e-16 Identity = 45/151 (29.80%), Postives = 85/151 (56.29%), Query Frame = 1
Query: 4 VVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAVMVLANKEPRSSHAEDMNLSIQAISITTHVQLERRQGSGPRLLVELVDPNAALHLQAAG----IRHVVSSAQLKLSVLGQSCLCPGWSAVVANLLESRAAIP 444
V++L + PS I SL+ P + G V Y+QGS ED L +A A +L NK+ A D + ++A+SI ++Q + + ++++L+ P++ + + V+ + ++KL++LG+SC+CPG+S +++NL+ S + P
Sbjct: 146 VILLGEEHPSLSITSLMDSPSWVGKVKYLQGSAFEDHDLNRADARGAKCFFILTNKDTNDPKAADQSTVLRAMSIKKYIQKYAEKDT--LVVMQLIAPDSRENFTRSRYGRTFHQVLCTDEIKLNLLGKSCICPGFSTMISNLIRSSNSEP 294
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Match: A0A7S1CL09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CL09_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 7.490e-16 Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 1
Query: 1 KVVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAVMVLANKEPRSSHAEDMNLSIQAISITTHVQLERRQGSGPRLLV--ELVDPNAALHLQAAGIRHVVSSAQLKLSVLGQSCLCPGWSAVVANLLESRA 435
KVV L P+ P+S + SLL P + V YI GSPL L KAR +A+AV VL ++ S H DM AI I ++ + P + V +LV+P +H A H+V +LK+ +L +SCLCPG+S ++ANL+ S +
Sbjct: 330 KVVFLCPNNPNSELGSLLLDPMFDDKVQYITGSPLVSMHLNKARPHDASAVFVLTSQF--SEH--DMTTDATAILIVKAIK-----STVPWVTVYCQLVNPLNKMHSSWAEWDHLVCIEELKMGILAKSCLCPGFSTLIANLITSSS 467
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Match: A0A3R7XYM8_9STRA (BK_channel_a domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7XYM8_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 6.830e-15 Identity = 47/147 (31.97%), Postives = 80/147 (54.42%), Query Frame = 1
Query: 4 VVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAVMVLANKEPRSSHAEDMNLSIQAISITTHVQLERRQGSGPRLLVELVDPNAALHLQAA---GIRHVVSSAQLKLSVLGQSCLCPGWSAVVANLLESRA 435
VVVLS DPP++ +K+LL P + V ++QGS L+ D ++A D A A+ +L N D SI V RRQ R+ +L N ++H Q G+++V+ +++ +S+LGQ+C+CPG+S + ++ + +
Sbjct: 212 VVVLSEDPPATSLKALLLDPFFAKRVWFVQGSLLDVDDAKRAACDTANAIFILTNP------VSDQETSISDHRTLMRVLAARRQAPKARVFAQL---NRSIHCQLVRDMGVQNVLCLSEVTMSLLGQNCICPGFSTFMYSITSTSS 349
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Match: A0A6A3E9H9_9STRA (BK_channel_a domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3E9H9_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.280e-14 Identity = 46/147 (31.29%), Postives = 83/147 (56.46%), Query Frame = 1
Query: 4 VVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAVMVLANKEPRSSHAEDMNLSIQAISITTHVQLERRQGSGPRLLVELVDPNAALHLQAA---GIRHVVSSAQLKLSVLGQSCLCPGWSAVVANLLESRA 435
V+VLS DPP++ +K+LL P + V +IQGS L+ D ++A D+A A+ +L N++ D S+ V +RQ R+ +L + ++H Q G+++V+ +++ LS+LGQ+C+CPG+S + +L + +
Sbjct: 337 VIVLSEDPPATSLKALLLDPFFAKRVWFIQGSLLDIDDAKRAACDSADAIFILTNRKG------DEEFSVSDHRTLMRVLAAKRQAPKARIFAQL---HRSIHCQLVRDMGVQNVLCLSEVALSLLGQNCICPGFSTFMYSLTSTSS 474 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65093.14096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65093.14096.1 >prot_H-elongata_contig65093.14096.1 ID=prot_H-elongata_contig65093.14096.1|Name=mRNA_H-elongata_contig65093.14096.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp KVVVLSPDPPSSRIKSLLARPRYRGHVTYIQGSPLEDDSLRKARVDNAAAback to top mRNA from alignment at H-elongata_contig65093:632..2702- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65093.14096.1 ID=mRNA_H-elongata_contig65093.14096.1|Name=mRNA_H-elongata_contig65093.14096.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2071bp|location=Sequence derived from alignment at H-elongata_contig65093:632..2702- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65093:632..2702- >mRNA_H-elongata_contig65093.14096.1 ID=mRNA_H-elongata_contig65093.14096.1|Name=mRNA_H-elongata_contig65093.14096.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig65093:632..2702- (Himanthalia elongata Himel1 dioecious)back to top |