mRNA_H-elongata_contig65088.14095.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65088.14095.1
Unique NamemRNA_H-elongata_contig65088.14095.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A6H5JB66_9PHAE (Methylenetetrahydrofolate reductase (NAD(P)H) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JB66_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 7.910e-38
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKVS 243
            I+VPVVPGLMCINA+GGFKKMT FC TRVP ELM+KME+IK+DEKAVKAFGV+ G EMC A+L  GAPG HFYTLNLEKV+
Sbjct:  251 IEVPVVPGLMCINAYGGFKKMTGFCLTRVPPELMAKMEEIKEDEKAVKAFGVDHGEEMCKALLAAGAPGLHFYTLNLEKVT 331          
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A7S0FPW1_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FPW1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.190e-33
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
            ID P++PGLMCINA+ GFKKM  FCKTRVP  L  KME +KDD+ AVK FG+E+GAE+C  +LD GA G HFYTLNLEKV
Sbjct:   93 IDCPIIPGLMCINAYAGFKKMVGFCKTRVPPSLEEKMESMKDDKDAVKQFGIEYGAEVCQKLLDAGACGLHFYTLNLEKV 172          
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A7S0GG49_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GG49_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.460e-31
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
            I  P++PGLMCINA+GGFKKMT FC+TRVP EL  KME IKD   A+K FGV++G E C  ++DGG  G HFYTLNLE+V
Sbjct:  262 ITCPIIPGLMCINAYGGFKKMTQFCRTRVPVELSEKMESIKDSSSAIKEFGVQYGIESCQKLIDGGVKGLHFYTLNLERV 341          
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A836C869_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C869_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.240e-30
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKVS 243
            I  PV+PG+MCINA+ GF +MT  CKTRVP EL  +ME IKDD+ A+KAFGVE+G E+C A+L  GAP  HFYTLNLEKV+
Sbjct:  252 ITAPVIPGIMCINAYAGFHRMTGLCKTRVPPELRKRMEAIKDDDAAIKAFGVEYGEELCRALLKHGAPVLHFYTLNLEKVT 332          
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A7S2W9Q8_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W9Q8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.570e-30
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
            I  P++PGLMCINA+ GFKKM  FCKTRVP  L   ME +KDD  AVK+FGVE+GAE+C A++D G  G HFYTLNLEKV
Sbjct:  260 ITCPIIPGLMCINAYPGFKKMAQFCKTRVPKALEETMESLKDDAAAVKSFGVEYGAEVCQALIDFGVDGLHFYTLNLEKV 339          
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A448YVV1_9STRA (Methylenetetrahydrofolate reductase n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YVV1_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.860e-30
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKVS 243
            ID P+VPGLMCINA+ GF KMT FCKTRVP+EL +KM+ +KDD  A+KAFG+EFG +MC  +++ G    HFYTLNLEK +
Sbjct:  247 IDCPIVPGLMCINAYAGFVKMTKFCKTRVPTELRAKMDSLKDDSDAIKAFGIEFGTQMCQDLIEIGVDVLHFYTLNLEKTT 327          
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A7S2M8D3_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M8D3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.070e-30
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
            I+ PVVPGLMCINA+ GFKKMT FCKTRVP  L  KM+ +KDD  A+K FGVE+GAE+C  +LD G    HFYTLNLEKV
Sbjct:  251 INCPVVPGLMCINAYPGFKKMTKFCKTRVPKALEEKMDSMKDDADAIKKFGVEYGAEVCRTLLDSGVKILHFYTLNLEKV 330          
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: K0TG67_THAOC (Methylenetetrahydrofolate reductase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TG67_THAOC)

HSP 1 Score: 117 bits (292), Expect = 1.950e-29
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
            I+ PVVPGLMCINA+ GFKKMT FCKTRVP +L  KM+ +KDD  AVK FGV FG+E+C ++LD G    HFYTLNLEKV
Sbjct:  251 INCPVVPGLMCINAYPGFKKMTKFCKTRVPKDLGEKMDAMKDDPDAVKKFGVTFGSEICRSLLDSGVEILHFYTLNLEKV 330          
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A1E7FKZ6_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKZ6_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.660e-29
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKVS 243
            I+ PVVPGLMCINA+ GF KMT FCKTRVP+EL +KM+ IKDD  AVKAFG+EFG +MC  + + G    HFYTLNLEK +
Sbjct:  240 INCPVVPGLMCINAYAGFVKMTGFCKTRVPAELRAKMDSIKDDPDAVKAFGIEFGIQMCQDLTEIGVEVLHFYTLNLEKTT 320          
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Match: A0A7S4N970_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N970_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.350e-29
Identity = 53/80 (66.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 IDVPVVPGLMCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMCSAILDGGAPGFHFYTLNLEKV 240
            I  PVVPGLMCINA+ GF KMT FCKTRV  +L  KME +KDD  A+KAFGV+FG E+C  + + GAP  HFYTLNLEKV
Sbjct:  244 IACPVVPGLMCINAYPGFTKMTKFCKTRVTKDLRDKMESLKDDVAAIKAFGVQFGTELCRDLTEAGAPVLHFYTLNLEKV 323          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65088.14095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB66_9PHAE7.910e-3879.01Methylenetetrahydrofolate reductase (NAD(P)H) n=2 ... [more]
A0A7S0FPW1_9STRA1.190e-3368.75Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S0GG49_9STRA4.460e-3165.00Methylenetetrahydrofolate reductase n=1 Tax=Probos... [more]
A0A836C869_9STRA1.240e-3065.43Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S2W9Q8_9STRA4.570e-3066.25Methylenetetrahydrofolate reductase n=1 Tax=Eucamp... [more]
A0A448YVV1_9STRA4.860e-3062.96Methylenetetrahydrofolate reductase n=2 Tax=Pseudo... [more]
A0A7S2M8D3_9STRA7.070e-3067.50Methylenetetrahydrofolate reductase n=1 Tax=Skelet... [more]
K0TG67_THAOC1.950e-2967.50Methylenetetrahydrofolate reductase n=1 Tax=Thalas... [more]
A0A1E7FKZ6_9STRA2.660e-2965.43Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
A0A7S4N970_9STRA5.350e-2966.25Methylenetetrahydrofolate reductase n=1 Tax=Odonte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65088contigH-elongata_contig65088:231..1252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue6.3e-26
Seed eggNOG ortholog2880.D8LCN9
KEGG rclassRC00081
KEGG koko:K00297
KEGG ReactionR01224,R07168
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,ko01523,map00670,map00720,map01100,map01120,map01200,map01523
KEGG ModuleM00377
EggNOG free text desc.methylenetetrahydrofolate reductase (NAD(P)H) activity
EggNOG OGsCOG0685@1,KOG0564@2759
EC1.5.1.20
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEukaryotic-type methylenetetrahydrofolate reductase
Ec32 orthologEc-03_002180.1
Exons2
Model size243
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65088.14095.1prot_H-elongata_contig65088.14095.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65088 258..1252 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.7950926-UTR-H-elongata_contig65088:230..2571622931036.7950926-UTR-H-elongata_contig65088:230..257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65088 231..257 +
1691679671.6745026-UTR-H-elongata_contig65088:230..2571691679671.6745026-UTR-H-elongata_contig65088:230..257Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65088 231..257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.84783-CDS-H-elongata_contig65088:257..3531622931036.84783-CDS-H-elongata_contig65088:257..353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65088 258..353 +
1691679671.691706-CDS-H-elongata_contig65088:257..3531691679671.691706-CDS-H-elongata_contig65088:257..353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65088 258..353 +
1622931036.8915396-CDS-H-elongata_contig65088:1132..12521622931036.8915396-CDS-H-elongata_contig65088:1132..1252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65088 1133..1252 +
1691679671.7052608-CDS-H-elongata_contig65088:1132..12521691679671.7052608-CDS-H-elongata_contig65088:1132..1252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65088 1133..1252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65088.14095.1

>prot_H-elongata_contig65088.14095.1 ID=prot_H-elongata_contig65088.14095.1|Name=mRNA_H-elongata_contig65088.14095.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MCINAWGGFKKMTSFCKTRVPSELMSKMEQIKDDEKAVKAFGVEFGAEMC
SAILDGGAPGFHFYTLNLEKVS
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mRNA from alignment at H-elongata_contig65088:231..1252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65088.14095.1 ID=mRNA_H-elongata_contig65088.14095.1|Name=mRNA_H-elongata_contig65088.14095.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1022bp|location=Sequence derived from alignment at H-elongata_contig65088:231..1252+ (Himanthalia elongata Himel1 dioecious)
ATCGATGTGCCGGTGGTGCCCGGGCTGATGTGCATAAACGCCTGGGGAGG CTTCAAGAAGATGACAAGCTTTTGCAAGACTCGAGTGCCATCAGAACTCA TGTCCAAAATGGAACAGATTAAGGTCTGAACGCGGAGGGTAGCGCGAAGA AACTCTATAGCTTATTTTCCCTTTATAAGTTATTAAGGGTGTAGAATTGA CCCTAAATTCATCCATGAAATATATGATCCAAACATGTAGACTGTGCTAT AAGGTTGTCCCTTTTGTTGTCGCGGGAGTCNNNNNNNNNNAGGCGTGAAC AGGGGGGGGGATCCGGTTTCATGGATTCATCTAGAAAGAAAAGGCGTAAT GGCCAAGGTGGTATATCATCAAATATTTAGTATGTCTGTGTGTGTGTGAT CATCAAATATTTAGTGAAGTCCGTTATGATTACACGGACCCTTAACCGTG TCCGATGCCGTAGGCGTTTTTTTTCCCTTGCCCGTTCGCGAGACGTGTTC GGCTGTCCCATTCAGTGGGATTAGGCAAGTTATATGGCTCGTCATCCACC CAGGTTCCCGTATTCTAGTAGTTTGCTTTTTGGGGGGTTATTTCAGTCAG AATTTTCTAGGTTTTCTCTTCAAAATCCTCTGTACAAAAGGATAAAAAAT AGTTCGGTGCTCGTTCACTTCTCCGCTTCATATATATATATATATAATAT AGTATATATAGTATATTTAGAGTATATATTTATTTTTTGCCAACTTCGAA TTCTCTCCGTAATTACTAGGCCCTCTATTTTTCAAGTATGTTAGATTTGA AACATGCATGTTGAAAAAGTGTGCCATGTTTTTCTATATGATGTTCAATT ATGATGTTCAATTCGCCTCTCTTTTCACGAAACATCAATAAACATCAATA AGGACGACGAAAAGGCGGTTAAGGCGTTTGGAGTCGAGTTCGGAGCGGAG ATGTGCTCGGCGATCCTCGACGGAGGTGCTCCCGGTTTCCACTTTTACAC ACTAAATCTTGAAAAGGTGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig65088:231..1252+

>mRNA_H-elongata_contig65088.14095.1 ID=mRNA_H-elongata_contig65088.14095.1|Name=mRNA_H-elongata_contig65088.14095.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig65088:231..1252+ (Himanthalia elongata Himel1 dioecious)
ATGTGCATAAACGCCTGGGGAGGCTTCAAGAAGATGACAAGCTTTTGCAA
GACTCGAGTGCCATCAGAACTCATGTCCAAAATGGAACAGATTAAGATGT
GCATAAACGCCTGGGGAGGCTTCAAGAAGATGACAAGCTTTTGCAAGACT
CGAGTGCCATCAGAACTCATGTCCAAAATGGAACAGATTAAGGACGACGA
AAAGGCGGTTAAGGCGTTTGGAGTCGAGTTCGGAGCGGAGATGTGCTCGG
CGATCCTCGACGGAGGTGCTCCCGGTTTCCACTTTTACACACTAAATCTT
GAAAAGGTGAGCGACGACGAAAAGGCGGTTAAGGCGTTTGGAGTCGAGTT
CGGAGCGGAGATGTGCTCGGCGATCCTCGACGGAGGTGCTCCCGGTTTCC
ACTTTTACACACTAAATCTTGAAAAGGTGAGC
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