mRNA_H-elongata_contig6504.14092.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6504.14092.1
Unique NamemRNA_H-elongata_contig6504.14092.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 1.690e-141
Identity = 224/411 (54.50%), Postives = 291/411 (70.80%), Query Frame = 3
Query:  144 RGISLMATSLKLLTVILSTRLNGAFEKAGLFSKAQAGFRRREECVNQSACLLEITRRRKLMGLPTYLLFIDLKKAYDMVPQEALMAKLDFYGVRGRALGFIRTLYS*SRIQVRVG*TVTEPADLLRGVRQGCPLSPVLFNIFINGVMDGADRSGVP-VRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTYAHRLAHLAIADAP 1373
            RGISLM T LK+L +I+STRLN AFE+  LFS++QAGFR REECV Q+ACLLEI +RRK      YL+F+DLKKAYD VPQEAL AKL FYGVRG  L FIR LY+ S+I VR G  +++   L RGVRQGCPLSPVLFNIFIN ++DGA+  GVP V  Q      IP L+FADDLV +S +R  +  M   ++ W  ENEM  GI KC +M +   R  L++ PD+W++AGE +P+V  YT L L F   L V  ++  ++A G++LV  +TP+L  R IPVP+KVA+VRGV++PRLLFGAEV+GM  +IT  ++V +N+ +RMV GM+  +T+ + A+WRE+  PPICA AAARRAR +QK  KL+TW+  ++ +P+KH+  TW TG   WMN Y+HRLA     D P
Sbjct:  583 RGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEALFAKLVFYGVRGEMLAFIRALYANSKIAVRTGDLLSDSFSLERGVRQGCPLSPVLFNIFINDILDGAESLGVPEVGNQLERAPRIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAIGHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKTWIASIMAQPYKHRKWTWGTGTGRWMNRYSHRLAKATSDDLP 993          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A2R5FKX6_9STRA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FKX6_9STRA)

HSP 1 Score: 260 bits (665), Expect = 2.970e-76
Identity = 142/365 (38.90%), Postives = 211/365 (57.81%), Query Frame = 3
Query:  270 ECVNQSACLLEITRRRKLMGLPTYLLFIDLKKAYDMVPQEALMAKLDFYGVRGRALGFIRTLYS*SRIQVRVG*--TVTEP-ADLLRGVRQGCPLSPVLFNIFINGVMDGADRSGVPVRM--QGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKC-RKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTYAHRL 1346
            EC  Q A LLE+ +RR++      LLFID+KKAYD VP  AL  KL   GVRG  L F++ LY+ S+++VR G    +  P A L RG+RQGCPLSP LFN+FIN + DG +  GV  R   +G     IP L+FADDLV+      GI     ++  W  +NE++VG  KC  + + +     ++      + G  VP+V  YT L L    +L     +++R+A+ +RL  ++  FLR + +P+  + A+ R V+IP + +GAE++  NK+ T   +  +N   +++ G+ R   +   A+W E G PP+CA A  +RAR L K  R+LRTW+  +VE  +K +  TW+T    W+NT+ HRL
Sbjct:    1 ECAAQVAALLEVCKRRRIEKRDIVLLFIDVKKAYDSVPHGALFFKLAKAGVRGPILAFVKALYAGSKMRVRTGYDPAILSPVAHLRRGLRQGCPLSPTLFNVFINDIFDGHEDLGVLARYHWRGTDGLRIPGLLFADDLVSFIEDAAGIRPAVERLETWLNDNELQVGHHKCGFLKMGRVPG-FEEAVAAAPLQGAAVPIVESYTYLGLEIRPDLSRQGTIADRLAKARRLAGSMHSFLRRQDVPIQFRTAVARTVLIPAITYGAEIFAFNKSFTRGAQQFINTQLKLIAGVARGQAVSNVALWHEFGVPPLCATANGQRARLLSKGGRELRTWLAKMVERGYKARRTTWITNARRWLNTHTHRL 364          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A7S1SJ55_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ55_9CHLO)

HSP 1 Score: 264 bits (675), Expect = 3.890e-75
Identity = 152/417 (36.45%), Postives = 233/417 (55.88%), Query Frame = 3
Query:  144 RGISLMATSLKLLTVILSTRLNGAFEKAGLFSKAQAGFRRREECVNQSACLLEITRRRKLMGLPTYLLFIDLKKAYDMVPQEALMAKLDFYGVRGRALGFIRTLYS*SRIQVRVG*T---VTEPADLLRGVRQGCPLSPVLFNIFINGVMDGADRSGVPV-----RMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSV--LQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAI-TESMEVLLNQVWRMVGGMNRNST-ILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTYAHRLAHLA 1358
            RGIS+M   +KLL  +++ RL    +   L  + Q GF   EEC  Q A + +I  RR+ +GLPTY  FIDL+KAYD +P E L +KL+  G+ G  L F++ LY  S +QV+ G     +++P  + RG+RQGCP SP+LFNIFIN + DG +  G  V      +       +P  +FADD V L+ S   +  M    + W  ++ M  G++KC +M + +   V  L++  D+WQ+ GE VPVVSEY  L      +L +  I+ +RV + +R V+ L   L  R IP+ ++ ++++  ++P L +G EV+GM+       ++ +LNQ  R + G+   +  + T  + RE+G  PI AMAAA R RA  K   L T +  LV +P + +  TW +G   W++ +A   A LA
Sbjct:  478 RGISIMGALIKLLMTVVTQRLQDVCQTNKLIRRWQGGFMPGEECPLQVASIFDIAGRRQALGLPTYAGFIDLRKAYDTIPHELLFSKLEANGITGHMLSFLKALYRDSTVQVKTGEAPGILSDPIPIERGLRQGCPASPILFNIFINDIFDGIEGLGCEVPGCVDMLDSRQPLRVPGQLFADDTVGLAPSLDNLHAMFAHFSQWAEDHYMGFGVKKCGVMALGRHSDVVALREQADRWQLGGERVPVVSEYRYLGALINSDLSMRNIVGDRVNKSRRAVEALDSVLGGRDIPINVRTSVLKTCILPVLTYGCEVWGMDSTSGVNRLQTILNQCLRRLVGVGAKAPGVATAPLLRELGIAPIEAMAAAARTRAFLKAPTLNTCISDLVRQPSRMRPNTWTSGTVRWLDRFARASAELA 894          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 265 bits (676), Expect = 1.840e-74
Identity = 161/405 (39.75%), Postives = 229/405 (56.54%), Query Frame = 3
Query:  144 RGISLMATSLKLLTVILSTRLNGAFEKA--GLFSKAQAGFRRREECVNQSACLLEITRRRKLMGLPTYLLFIDLKKAYDMVPQEALMAKLDFYGVRGRALGFIRTLYS*SRIQVRVG*TVTE---PADLLRGVRQGCPLSPVLFNIFINGVMDGADRSGVPVRMQGGVKSH-IPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQT-PDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLL-NQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTY 1334
            RGISL+   LKLL  I++ RL    +        K QAGFR REEC+     L E+ RRR++M LP+YL FIDLKKAYD VP  AL  KL+  GVRG+ L FI+ LY  S +  R          PA L RG+RQGCP+SP+LFN+FIN ++D     GV V   G  +S  +  L+FADDLV LS     +++    +T+W  + EM+ G+ KC +M ++ P S L     DQW + G+PVP+V EY  L      +L +   +  RV   K+ + +++PFL  R IP+ ++  +   +V P  L+GAE++G+ +  T  +  L  N + R+ G         T  + RE+  PP+ A+AAARR RA  K   L+TWV  L + P + + KTW+TG   W+  +
Sbjct:  775 RGISLIPVVLKLLCTIITRRLASMIDDQINPRLHKEQAGFRSREECLGHIVALYEVLRRRQIMQLPSYLAFIDLKKAYDTVPHGALFHKLEKIGVRGKCLRFIQNLYRHSSVSFRAPSDCCRNISPAPLRRGLRQGCPMSPLLFNVFINDIIDEIRELGVHV--PGLPRSTTLGGLLFADDLVLLSDHPDKLQQSLDAITHWADKWEMQFGVSKCAIMGIDMPISHLSSLREDQWTLQGQPVPLVEEYVYLGTLLHNSLDMKESIRYRVGRAKKALQSVSPFLSCRSIPLHIRSRVFMSMVCPVALYGAELWGLREDRTRPIHSLFANAIQRIAG-------TYTGTLARELRIPPVAALAAARRTRAFFKFPSLKTWVSTLCQHPLRKRKKTWLTGCQYWLRRF 1170          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A0R0LX01_9MICR (RNA-directed DNA polymerase, Non LTR Retrotransposon n=1 Tax=Pseudoloma neurophilia TaxID=146866 RepID=A0A0R0LX01_9MICR)

HSP 1 Score: 244 bits (623), Expect = 5.000e-71
Identity = 148/416 (35.58%), Postives = 224/416 (53.85%), Query Frame = 3
Query:  144 RGISLMATSLKLLTVILSTRLNGAFEKAGLFSKAQAGFRRREECVNQSACLLEITRRRKLMGLPTYLLFIDLKKAYDMVPQEALMAKLDFYGVRGRALGFIRTLYS*SRIQVRVG*TVTEPADLLRGVRQGCPLSPVLFNIFINGVMDGADRSGVPVRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTYAHRLAHLAIADAPEGIKEA 1391
            RGISL++T  K+LT I++ R+    E+  L    QAGFRR EECV  +  L EI RRR+L G  TY  F+D  KAYD VP   L+ KL  YG  G+ L  +  +Y   R  VR+G   ++  D   GVRQGCP SP+LFN++IN ++DG   SGV +   GG+   IP L+FADD V L+ S   ++    ++  W    +M + + KC ++V      V      Q  ++G  + ++S+YT L L  T +L +  I+++R  +      +L PFL  R +P  ++  +VR V++P   +G E+YGM+ A    ++ ++++  R + G + N      A + E+  P +    A  RARA+ K    RT +  L+  PFK +  TW+TG   W+ T  H         AP G++EA
Sbjct:    8 RGISLISTCCKILTKIVANRVASISEENSLLRNEQAGFRRLEECVAYATSLYEIARRRRLKGDATYAAFLDFSKAYDRVPHRGLLCKLRTYGFHGKLLRVLEAMYENPRASVRIGNDRSDSFDYAIGVRQGCPASPILFNLYINDLLDGL--SGVEI---GGLT--IPGLLFADDAVILAESPQALQEDLNRIDEWCGRWKMSLNVSKCGVVVFGPEDGV------QLSVSGSEIAMLSQYTYLGLPMTADLDLEAIVADRKEKATSAYHSLRPFLLRRHVPAVIRAQIVRAVLVPIATYGCELYGMSSARLHPLQRVIDRAIRDILGCSSN--YCRKAAYEELRIPSMALRGAKLRARAITKWSSSRTTIGSLLCSPFKDRSATWMTGTQRWLKTLLH-------TTAPTGVREA 401          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A0F9ZBM3_9MICR (Endonuclease-reverse transcriptase n=2 Tax=Nosema ceranae TaxID=40302 RepID=A0A0F9ZBM3_9MICR)

HSP 1 Score: 248 bits (633), Expect = 1.130e-69
Identity = 146/414 (35.27%), Postives = 230/414 (55.56%), Query Frame = 3
Query:  144 RGISLMATSLKLLTVILSTRLNGAFEKAGLFSKAQAGFRRREECVNQSACLLEITRRRKLMGLPTYLLFIDLKKAYDMVPQEALMAKLDFYGVRGRALGFIRTLYS*SRIQVRVG*TVTEPADLLRGVRQGCPLSPVLFNIFINGVMDGADRSGVPVRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVV----------------NKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTYA 1337
            RGI+L+ +  K++  I + R++   E  GL +K QAGFR  EEC  Q A L E+ +RR +    TYL FID  KAYD VPQ AL+ KL+  G+ G  L  +++LY   R+ VRVG + +   +   GVRQGCP SP+LF++FIN ++ G D   +P     GV   +  L+FADD V ++ S + + R    +T W+ ++EM V   KC +M +                NK   V QQ P+ ++I G  VP VSEY  L +RFT +L + +++    ++G++ +  +   L  + +PV +K+  ++  +   L +GAEV+GM+    + ++ ++N+  R+V G  RN+ +    I  E+G   +  +AA +RARA+ K    +TW+  L    F+ +  TWVTG   W+  YA
Sbjct:  331 RGIALLPSLTKVVAKIAANRISQIAETHGLLAKEQAGFRTLEECTAQVATLYEVVKRRSIRNQSTYLAFIDYAKAYDKVPQGALLRKLESIGIGGHLLQVVKSLYEDPRMCVRVGSSTSPVVNYHCGVRQGCPASPILFDLFINDLLQGMDGVAIP-----GVSEAVSGLLFADDAVVMAESESALRRNLDLLTSWSEKHEMSVNASKCGIMKIRATEDVIAGGPNFLQPNKKARVEQQEPEPFEIMGNVVPEVSEYIYLGIRFTPDLCLNSMMQHVESKGRKAIGAMYYLLSKKDMPVYVKILSIKVKLQSILTYGAEVWGMSTLRCKGIQRIMNEACRLVVGGGRNAAM--DRIRSELGIQSVANIAAVKRARAVAKWPGCKTWIATLSTSQFRSREWTWVTGNIKWLKRYA 737          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG)

HSP 1 Score: 242 bits (617), Expect = 1.450e-66
Identity = 139/397 (35.01%), Postives = 223/397 (56.17%), Query Frame = 3
Query:  144 RGISLMATSLKLLTVILSTRLNGAFEKAGLFSKAQAGFRRREECVNQSACLLEITRRRKLMGLPTYLLFIDLKKAYDMVPQEALMAKLDFYGVRGRALGFIRTLYS*SRIQVRVG*TVTEPADLLRGVRQGCPLSPVLFNIFINGVMDGADRSGVPVRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTY 1334
            RGISL+ T  K+L+ I++ RL+    K  +  K QAGFR REECV Q+  L E+ RRRK+ GL T++ FID  KAYD VP +AL+ K+   G+ G+    I  LY   ++ VRVG  +++  +   GVRQGCP SP+LF+IFIN ++DG     VP     G+ + IP L+FADD V L+ S   ++    ++T W+++ EM++  +KC +M +N    +L      + I G+P+  V+EY  L + F +     + L      G++   ++  FL  R IP  M++A+VR V++P L +G E++GM+     +++ + +   R+V G+ R++ +    I  E+    I    +  R R   K    +TW+  L+ +P K++  TWV+G   W   +
Sbjct: 1162 RGISLIPTLSKVLSKIIARRLSKIDNKHDILVKEQAGFRSREECVAQATALYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKSSGIGGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLDGIKGVKVP-----GIDTEIPGLLFADDAVVLAESPAELQIALEKLTVWSLKWEMQINQEKCGIMGINSSTGML------FTIMGKPIKQVAEYKYLGVVFNDKWNNLSALKNNRDNGRKAFHSMYYFLSRRDIPTAMRIALVRTVLMPILCYGGEIFGMSATRAGALQKIADDAARLVAGVGRSTALQR--IRNELKIDEINTRVSVARERGHTKWAGSKTWISELINQPLKNRLDTWVSGTIRWKKRF 1545          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG)

HSP 1 Score: 240 bits (612), Expect = 2.290e-66
Identity = 138/397 (34.76%), Postives = 218/397 (54.91%), Query Frame = 3
Query:  144 RGISLMATSLKLLTVILSTRLNGAFEKAGLFSKAQAGFRRREECVNQSACLLEITRRRKLMGLPTYLLFIDLKKAYDMVPQEALMAKLDFYGVRGRALGFIRTLYS*SRIQVRVG*TVTEPADLLRGVRQGCPLSPVLFNIFINGVMDGADRSGVPVRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTY 1334
            RGISL+ T  K+L+ I++ RL     K  + +K QAGFR REECV Q+  L E+ RRRK+ GL T++ FID  KAYD VP EAL+ K+   G+ G+    I  LY   ++ VRVG  +++  D   GVRQGCP SP+LF+I+IN ++DG     +P     G++  IP L+FADD V L+ S   ++    ++T W+ + EM++   KC +M +N    +L      + I G+P+  V EY  L + F       + L       ++   ++  FL  + +P  M+ A++R V+IP L +G E++GM+     +++ + +   R+V G+ R++ +       EM    I   A+  R R   K    +TW+  L+ +PFK++  TWV+G   W   +
Sbjct:  476 RGISLIPTLSKVLSKIIARRLCKIDNKYSILAKEQAGFRTREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEALLRKIKTAGIGGKLYRVIEALYRSPKMCVRVGDRLSKTVDYNCGVRQGCPASPMLFDIYINDLLDGIKGVKIP-----GIEECIPGLLFADDAVVLAESPAELQIALEKLTAWSQKWEMQINQDKCGIMGINSSTGML------FTIMGKPITQVKEYKYLGVVFNNKWNNLSALQNNKENERKAFQSMYYFLSRKDVPTAMRAALIRTVLIPILCYGCEIFGMSAVRCSTLQKVADDATRLVAGVGRSTALSRLR--SEMKIDDIFTRASVARERGHNKWTTSKTWITELINKPFKNRLDTWVSGTVRWKKRF 859          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A1R1X253_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X253_9FUNG)

HSP 1 Score: 228 bits (582), Expect = 1.530e-63
Identity = 132/397 (33.25%), Postives = 216/397 (54.41%), Query Frame = 3
Query:  144 RGISLMATSLKLLTVILSTRLNGAFEKAGLFSKAQAGFRRREECVNQSACLLEITRRRKLMGLPTYLLFIDLKKAYDMVPQEALMAKLDFYGVRGRALGFIRTLYS*SRIQVRVG*TVTEPADLLRGVRQGCPLSPVLFNIFINGVMDGADRSGVPVRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTY 1334
            +GISLM + +K++T I S RL     K  L  K QAGFR REECV+Q+  L E  RRRK+  LPT++ FID  KA+D VP +AL+ KL    + G     I  LY   +IQ+R G  ++E  +   GVRQGCP SP+LF++FIN +++      +P  ++G ++     L+FADD V L+ S   ++    +++ W+ + EM+V   KC  + + +  +++      + + G  VP V EY  L + F +     + +       ++ ++ +  FL  + IP+ ++  ++R V++P   +G E++GM++A    ++ +L+   R+V G  + + I    I  E+   P+    A  R RA  K  K RTW+  L+E P K K  TWV+G   W+  +
Sbjct:  170 KGISLMPSIIKIVTKIASHRLAEMDLKHNLLIKEQAGFRTREECVSQATVLYEAVRRRKIKSLPTWIGFIDFAKAFDRVPHQALLYKLKKLNIGGHLHKVISALYKNPKIQIRFGNALSETVEYECGVRQGCPASPMLFDLFINDILEAIKGVYIP-ELEGNIRG----LLFADDAVVLAESPAELQIAFEKISQWSKKWEMKVNASKCGAIGIGQSTNMI------FTVQGGIVPQVEEYKYLGIMFNKRWNHVSAIKNNTDNARKALNGMYYFLARKKIPIALRTIIIRSVLLPIATYGGEIFGMSQARNNKIQSILDTATRLVLGAGKTAAITR--IREELRITPVNTKTAISRERAYYKWHKSRTWISDLIEFPMKSKLATWVSGTQRWIKRF 553          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG)

HSP 1 Score: 231 bits (590), Expect = 2.440e-63
Identity = 133/397 (33.50%), Postives = 221/397 (55.67%), Query Frame = 3
Query:  144 RGISLMATSLKLLTVILSTRLNGAFEKAGLFSKAQAGFRRREECVNQSACLLEITRRRKLMGLPTYLLFIDLKKAYDMVPQEALMAKLDFYGVRGRALGFIRTLYS*SRIQVRVG*TVTEPADLLRGVRQGCPLSPVLFNIFINGVMDGADRSGVPVRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTY 1334
            RGISL+ T  K+++ I+S RL     K  + +K QAGFR REECV Q+  L E+ RRRK+ GL T++ FID  KAYD VP +AL+ K+   G+RG+    I  LY   ++ VRVG  +++  +   GVRQGCP SP+LF+IFIN ++ G     +P     G+ + I  L+FADD V L+ S   ++    +++ W+ + EM++  +KC +M +N    +L      + + G+ +  V+EY  L + F       + L      G++   ++  FL  + IP  M+VA++R V+IP L +G E++GM+   + +++ + +   R+V G+ +++ +       E+    I    +  R R   K    +TW+  L+++PFK++  TWV+G   W   +
Sbjct:  538 RGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQALLRKIKNSGIRGKLYRMIEALYRSPKMCVRVGDRLSKIVEYNCGVRQGCPASPLLFDIFINDLLGGIKGVKIP-----GIDTEIAGLLFADDAVVLADSPAELQIALEKLSAWSHKWEMKINQEKCGIMGINSSTGML------FTVMGKHIEQVTEYKYLGVVFNNKWNNLSALKSNRKNGRKAFHSMYYFLSRKDIPTAMRVALIRTVLIPILCYGGEIFGMSATRSGTLQKVADDATRLVAGVGKSTALQRLR--NELKIDDINTRVSVARERGHTKWASSKTWISELIKQPFKNRLDTWVSGTVRWKRRF 921          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE1.690e-14154.50Reverse transcriptase domain-containing protein n=... [more]
A0A2R5FKX6_9STRA2.970e-7638.90Retrovirus-related Pol polyprotein from type-1 ret... [more]
A0A7S1SJ55_9CHLO3.890e-7536.45Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A3M2C3P5_9GAMM1.840e-7439.75Reverse transcriptase domain-containing protein n=... [more]
A0A0R0LX01_9MICR5.000e-7135.58RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
A0A0F9ZBM3_9MICR1.130e-6935.27Endonuclease-reverse transcriptase n=2 Tax=Nosema ... [more]
A0A1R1YP44_9FUNG1.450e-6635.01LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A1R1Y7R2_9FUNG2.290e-6634.76Putative RNA-directed DNA polymerase from transpos... [more]
A0A1R1X253_9FUNG1.530e-6333.25RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1YAQ4_9FUNG2.440e-6333.50RNA-directed DNA polymerase from mobile element jo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6504contigH-elongata_contig6504:1857..3247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score74.3
Seed ortholog evalue9.6e-11
Seed eggNOG ortholog126957.SMAR003200-PA
KEGG rclassRC00063
KEGG koko:K15407
KEGG ReactionR03789,R10209
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3CYKV@33213,420TT@6656,KOG1075@1,KOG1075@2759
EC2.4.2.29
COG Functional cat.C
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size1391
Cds size810
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.4248984-UTR-H-elongata_contig6504:1856..24371622931036.4248984-UTR-H-elongata_contig6504:1856..2437Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6504 1857..2437 +
1691679671.5148337-UTR-H-elongata_contig6504:1856..24371691679671.5148337-UTR-H-elongata_contig6504:1856..2437Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6504 1857..2437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.4381073-CDS-H-elongata_contig6504:2437..32471622931036.4381073-CDS-H-elongata_contig6504:2437..3247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 2438..3247 +
1691679671.5298405-CDS-H-elongata_contig6504:2437..32471691679671.5298405-CDS-H-elongata_contig6504:2437..3247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6504 2438..3247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6504.14092.1prot_H-elongata_contig6504.14092.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6504 2438..3247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6504.14092.1

>prot_H-elongata_contig6504.14092.1 ID=prot_H-elongata_contig6504.14092.1|Name=mRNA_H-elongata_contig6504.14092.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
MDGADRSGVPVRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYW
TVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRL
RFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIP
RLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGT
PPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNT
YAHRLAHLAIADAPEGIKEA
back to top

mRNA from alignment at H-elongata_contig6504:1857..3247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6504.14092.1 ID=mRNA_H-elongata_contig6504.14092.1|Name=mRNA_H-elongata_contig6504.14092.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1391bp|location=Sequence derived from alignment at H-elongata_contig6504:1857..3247+ (Himanthalia elongata Himel1 dioecious)
GAGGGACCGTCCCCAATGGGGGACGCGCTCTTAGCCGTGCTGAACCACAT GTGGAAGTCGAACACCATACCTTCGGCCTCGCGCAATTCGACGGTAGTAT CCATACCCAAGAAGGGAGACCTTACGGAGATGGGTAACTACCAAGAGGGA TATCCCTGATGGCTACATCACTAAAATTGCTGACGGTCATCCTCAGCACC AGACTTAACGGTGCGTTTGAGAAAGCGGGATTATTCAGTAAGGCACAGGC TGGTTTTCGAAGGAGGGAAGAATGTGTCAACCAGAGTGCATGTCTTTTAG AGATAACGAGGAGGCGGAAACTGATGGGTCTACCCACGTATCTGCTGTTC ATCGACCTCAAGAAGGCATATGACATGGTGCCGCAGGAAGCCCTAATGGC GAAACTCGATTTCTATGGAGTGAGGGGACGCGCGCTCGGATTTATTAGAA CTTTATACTCCTGAAGTCGTATCCAGGTACGGGTAGGTTAGACCGTGACG GAACCAGCCGACCTCCTTCGGGGGGTTCGACAAGGGTGCCCCCTTTCGCC TGTTCTGTTCAACATATTTATCAATGGTGTGATGGATGGGGCGGACCGAT CAGGGGTCCCAGTGCGCATGCAAGGGGGGGTAAAATCACACATTCCAGCA TTAATGTTTGCGGATGACCTGGTTGCACTGTCGAGATCCCGTACGGGCAT CGAGAGGATGGCCAGACAAGTCACATACTGGACGGTTGAGAATGAGATGA GGGTGGGGATACAAAAATGCGAATTAATGGTTGTGAACAAACCGCGCAGT GTGCTCCAACAAACACCTGACCAATGGCAAATAGCGGGAGAACCCGTACC GGTCGTCAGCGAGTACACGAACTTGAGGTTACGCTTCACGGAGAACCTCG GTGTACCAACTATACTGAGCGAAAGGGTTGCTGAAGGAAAGAGATTGGTG GATACACTAACACCTTTCTTGCGTACTCGGGTGATTCCGGTACCAATGAA GGTGGCGATGGTCAGAGGTGTGGTCATTCCGCGGCTACTGTTTGGGGCGG AGGTGTATGGCATGAATAAGGCCATCACTGAGTCCATGGAGGTCCTGTTG AATCAGGTCTGGCGGATGGTCGGGGGGATGAACCGAAACTCGACTATTTT AACTTTTGCCATATGGAGAGAAATGGGAACGCCCCCTATATGTGCGATGG CCGCGGCGCGAAGAGCTCGGGCACTACAAAAGTGCCGTAAGCTTCGTACA TGGGTACGCTATTTGGTCGAGGAACCATTCAAACACAAGTGTAAAACCTG GGTAACGGGAATGAACACGTGGATGAATACGTACGCACACCGATTGGCAC ATCTGGCCATAGCAGATGCACCAGAAGGGATCAAAGAGGCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6504:1857..3247+

>mRNA_H-elongata_contig6504.14092.1 ID=mRNA_H-elongata_contig6504.14092.1|Name=mRNA_H-elongata_contig6504.14092.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig6504:1857..3247+ (Himanthalia elongata Himel1 dioecious)
ATGGATGGGGCGGACCGATCAGGGGTCCCAGTGCGCATGCAAGGGGGGGT
AAAATCACACATTCCAGCATTAATGTTTGCGGATGACCTGGTTGCACTGT
CGAGATCCCGTACGGGCATCGAGAGGATGGCCAGACAAGTCACATACTGG
ACGGTTGAGAATGAGATGAGGGTGGGGATACAAAAATGCGAATTAATGGT
TGTGAACAAACCGCGCAGTGTGCTCCAACAAACACCTGACCAATGGCAAA
TAGCGGGAGAACCCGTACCGGTCGTCAGCGAGTACACGAACTTGAGGTTA
CGCTTCACGGAGAACCTCGGTGTACCAACTATACTGAGCGAAAGGGTTGC
TGAAGGAAAGAGATTGGTGGATACACTAACACCTTTCTTGCGTACTCGGG
TGATTCCGGTACCAATGAAGGTGGCGATGGTCAGAGGTGTGGTCATTCCG
CGGCTACTGTTTGGGGCGGAGGTGTATGGCATGAATAAGGCCATCACTGA
GTCCATGGAGGTCCTGTTGAATCAGGTCTGGCGGATGGTCGGGGGGATGA
ACCGAAACTCGACTATTTTAACTTTTGCCATATGGAGAGAAATGGGAACG
CCCCCTATATGTGCGATGGCCGCGGCGCGAAGAGCTCGGGCACTACAAAA
GTGCCGTAAGCTTCGTACATGGGTACGCTATTTGGTCGAGGAACCATTCA
AACACAAGTGTAAAACCTGGGTAACGGGAATGAACACGTGGATGAATACG
TACGCACACCGATTGGCACATCTGGCCATAGCAGATGCACCAGAAGGGAT
CAAAGAGGCTATGGATGGGGCGGACCGATCAGGGGTCCCAGTGCGCATGC
AAGGGGGGGTAAAATCACACATTCCAGCATTAATGTTTGCGGATGACCTG
GTTGCACTGTCGAGATCCCGTACGGGCATCGAGAGGATGGCCAGACAAGT
CACATACTGGACGGTTGAGAATGAGATGAGGGTGGGGATACAAAAATGCG
AATTAATGGTTGTGAACAAACCGCGCAGTGTGCTCCAACAAACACCTGAC
CAATGGCAAATAGCGGGAGAACCCGTACCGGTCGTCAGCGAGTACACGAA
CTTGAGGTTACGCTTCACGGAGAACCTCGGTGTACCAACTATACTGAGCG
AAAGGGTTGCTGAAGGAAAGAGATTGGTGGATACACTAACACCTTTCTTG
CGTACTCGGGTGATTCCGGTACCAATGAAGGTGGCGATGGTCAGAGGTGT
GGTCATTCCGCGGCTACTGTTTGGGGCGGAGGTGTATGGCATGAATAAGG
CCATCACTGAGTCCATGGAGGTCCTGTTGAATCAGGTCTGGCGGATGGTC
GGGGGGATGAACCGAAACTCGACTATTTTAACTTTTGCCATATGGAGAGA
AATGGGAACGCCCCCTATATGTGCGATGGCCGCGGCGCGAAGAGCTCGGG
CACTACAAAAGTGCCGTAAGCTTCGTACATGGGTACGCTATTTGGTCGAG
GAACCATTCAAACACAAGTGTAAAACCTGGGTAACGGGAATGAACACGTG
GATGAATACGTACGCACACCGATTGGCACATCTGGCCATAGCAGATGCAC
CAGAAGGGATCAAAGAGGCT
back to top