mRNA_H-elongata_contig11827.1409.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11827.1409.1
Unique NamemRNA_H-elongata_contig11827.1409.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Match: A0A6H5JXE6_9PHAE (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXE6_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 1.650e-106
Identity = 176/216 (81.48%), Postives = 195/216 (90.28%), Query Frame = 1
Query:    1 ANDALRTLCLAHIDFASENELERGYEVESPDADTMVLDAVVGIMDPLRGDVKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFRAMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIPATEK----VH-KDGELGLSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 633
            AN+ALRTLCLAH+D+AS ++L+ GYE++SPDADTMVLDAVVGIMDPLRGDV EAVATAQ AGVMVRMVTGDNINTAKAIA++CGIYDP+YGVALEGP FRAMSPAQ+DEVLPRLQVLARSSPNDKYLLVTRLNG+GIPA E+    +H KDG+LGLS+  HK+LLLPGY EEWK    R+   GEVVGVTGDGTNDAPALKAADVGLSMGITGTKV
Sbjct:  569 ANNALRTLCLAHMDYASTSDLDEGYEIDSPDADTMVLDAVVGIMDPLRGDVTEAVATAQSAGVMVRMVTGDNINTAKAIAKECGIYDPDYGVALEGPDFRAMSPAQVDEVLPRLQVLARSSPNDKYLLVTRLNGNGIPANEEEWRNLHDKDGDLGLSWDAHKDLLLPGYKEEWK----RQNKSGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 780          
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Match: A0A835ZLB8_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLB8_9STRA)

HSP 1 Score: 287 bits (734), Expect = 4.660e-87
Identity = 157/216 (72.69%), Postives = 176/216 (81.48%), Query Frame = 1
Query:    1 ANDALRTLCLAHIDFASENELERGYEVESPDADTMVLDAVVGIMDPLRGDVKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFRAMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIPATE----KVH-KDGELGLSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 633
            A+ ALRT+CLAH D+A   EL  G+E  SPD+D MV DA+VGIMDPLR +VKEAVATAQRAGVMVRMVTGDNI+TAKAIAR CGI   E GVALEGP FRAM+PAQ+DEVLPRLQVLARS+PNDKYLLVTRLNGH +P  E    ++H KDG  GLS+A  ++ +LPGY +EW  A     G GEVVGVTGDGTNDAPALKAADVGLSMGITGTKV
Sbjct:  593 ADRALRTICLAHKDYAGTAELPAGWETASPDSDDMVCDAIVGIMDPLRPEVKEAVATAQRAGVMVRMVTGDNIHTAKAIARDCGILR-EGGVALEGPSFRAMTPAQVDEVLPRLQVLARSTPNDKYLLVTRLNGHNMPRNEAEWKELHDKDGLRGLSWAADRDKMLPGYADEWHKANP---GGGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 804          
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Match: A0A835ZDK6_9STRA (Calcium-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK6_9STRA)

HSP 1 Score: 286 bits (733), Expect = 1.350e-86
Identity = 159/216 (73.61%), Postives = 176/216 (81.48%), Query Frame = 1
Query:    1 ANDALRTLCLAHIDFASENELERGYEVESPDADTMVLDAVVGIMDPLRGDVKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFRAMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIPATE----KVH-KDGELGLSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 633
            A+ ALRT+C+AHIDF S  +L  G+E ESPD+D MV DAVVGIMDPLR +VKEAVATAQ AGVMVRMVTGDNI+TAKAIAR CGI   E GVALEGP FR M+PAQ+DEVLPRLQVLARS+PNDKYLLVTRLNGH +P  E    ++H K G LGLS+   ++ LLPGY EEW  A   KGG  EVVGVTGDGTNDAPALKAADVGLSMGITGTKV
Sbjct:  627 ADRALRTICIAHIDFDSVADLPAGWETESPDSDQMVCDAVVGIMDPLRPEVKEAVATAQHAGVMVRMVTGDNIHTAKAIARDCGILR-EGGVALEGPTFRNMTPAQVDEVLPRLQVLARSTPNDKYLLVTRLNGHNMPKNEAEWKEIHDKTGVLGLSWETDRDRLLPGYAEEWAKA-NPKGG--EVVGVTGDGTNDAPALKAADVGLSMGITGTKV 838          
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Match: A0A7S3Y3S6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3S6_HETAK)

HSP 1 Score: 258 bits (659), Expect = 2.520e-79
Identity = 137/213 (64.32%), Postives = 168/213 (78.87%), Query Frame = 1
Query:    1 ANDALRTLCLAHIDFASENELERGYE--VESPDADTMVLDAVVGIMDPLRGDVKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFRAMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIPATEKVHKDGELGLSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 633
            A+ ALRT+ +AH DFAS +EL   ++  V   D + +VLD +VGI DPLRGDV+EAVATAQRAGV+VRMVTGDNI TA+AIARQCGI   + G+A+EGP FR M+PAQ+D +LP+LQVLARSSP+DKYLLVTRLNG G+P  +   ++   GLS+   ++L+LPGY EEW     + GG+  VVGVTGDGTNDAPALKAA+VGLSMGITGTKV
Sbjct:  343 ADQALRTIAVAHRDFASADELPANWKEGVGELDTEGLVLDCLVGIQDPLRGDVREAVATAQRAGVVVRMVTGDNIQTARAIARQCGILTAD-GIAMEGPDFRKMTPAQVDRILPKLQVLARSSPDDKYLLVTRLNGQGLPKDQASWEEQHPGLSWGGDRDLVLPGYREEWAAGRGKDGGH--VVGVTGDGTNDAPALKAANVGLSMGITGTKV 552          
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Match: A0A7S3Y3V0_HETAK (Calcium-transporting ATPase n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3V0_HETAK)

HSP 1 Score: 258 bits (659), Expect = 1.800e-76
Identity = 137/213 (64.32%), Postives = 170/213 (79.81%), Query Frame = 1
Query:    1 ANDALRTLCLAHIDFASENELERGYE--VESPDADTMVLDAVVGIMDPLRGDVKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFRAMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIPATEKVHKDGELGLSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 633
            A+ ALRTL +AH +F S  +L  G++  +   DA+ +VLD +VGI DPLRGDV+EAVATAQRAGV+VRMVTGDNI TA+AIARQCGI   + G+A+EGP FR M+PAQ+D++LP+LQVLARSSP+DKYLLVTRLNG G+P  +   ++   GLS+A  ++L+LPGY EEW  +    GG+  VVGVTGDGTNDAPALKAA+VGLSMGITGTKV
Sbjct:  552 ADSALRTLGVAHREFPSVGDLPEGWKDNLGDLDAEGLVLDCLVGIQDPLRGDVREAVATAQRAGVVVRMVTGDNIQTARAIARQCGILTAD-GIAMEGPDFRKMTPAQVDKILPKLQVLARSSPDDKYLLVTRLNGQGLPKDQASWEEAHPGLSWASDRDLVLPGYREEWVASRGEDGGH--VVGVTGDGTNDAPALKAANVGLSMGITGTKV 761          
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Match: A0A482SEH8_9ARCH (HAD family hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEH8_9ARCH)

HSP 1 Score: 254 bits (649), Expect = 2.010e-76
Identity = 140/215 (65.12%), Postives = 165/215 (76.74%), Query Frame = 1
Query:    1 ANDALRTLCLAHIDFASENELERGYEVESPDADTMVLDAVVGIMDPLRGDVKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFRAMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIP----ATEKVHKDGELGLSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 633
            A +ALRTLCLAH DF S ++L   +E   PD   +VLD +VGI+DPLR DVKEAV  AQ AGV VRMVTGDNI TA AIARQCGI  P  G+A+EGP FR M P  +D +LPRLQVLARSSP+DK+LLVTRLNG+GIP    A EK  KD E G+++ + ++LL+PGY EEW+   + +   G+VVGVTGDGTNDAPALKAADVGLSMGITGTKV
Sbjct:  254 AENALRTLCLAHRDFKSVSDLPAKWEDNPPDNANLVLDCIVGIIDPLRSDVKEAVRVAQEAGVTVRMVTGDNIATACAIARQCGILTPT-GLAMEGPTFRKMKPKDVDAILPRLQVLARSSPDDKFLLVTRLNGYGIPEDKEAWEKKFKDRE-GVTWEKDRDLLMPGYREEWE---ESRPEGGQVVGVTGDGTNDAPALKAADVGLSMGITGTKV 463          
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Match: W7TSK5_9STRA (Calcium-transporting ATPase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSK5_9STRA)

HSP 1 Score: 255 bits (651), Expect = 3.140e-75
Identity = 132/211 (62.56%), Postives = 162/211 (76.78%), Query Frame = 1
Query:    1 ANDALRTLCLAHIDFASENELERGYEVESPDADTMVLDAVVGIMDPLRGDVKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFRAMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIPATEKVHKDGELGLSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 633
            AN ALRTLC+AH DF     L   +E   PD + +V D +VGI+DPLR DVK+AV TAQ+AGVMVRM+TGDNI+TA+AIAR CGI  P  G+A+EGPVFR ++PAQLDE+LPR+QV+ARSSP DKYL+VTRLNG  +P  +   ++   G  + + K+LLLPGY +EW  +    GG+  VVGVTGDGTNDAPALKAADVGLSMGITGT+V
Sbjct:  571 ANRALRTLCIAHRDFPPGEALPADWEDVPPDHENLVCDGIVGIIDPLREDVKDAVKTAQKAGVMVRMITGDNIHTAQAIARDCGILTPG-GLAIEGPVFRNLTPAQLDELLPRIQVMARSSPEDKYLMVTRLNGANLPKDKASWEEKHPGRDWEEEKDLLLPGYYQEWNASRGSDGGH--VVGVTGDGTNDAPALKAADVGLSMGITGTQV 778          
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Match: A0A812WBN1_SYMMI (ATP2B1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WBN1_SYMMI)

HSP 1 Score: 239 bits (611), Expect = 6.480e-73
Identity = 134/214 (62.62%), Postives = 162/214 (75.70%), Query Frame = 1
Query:    1 ANDALRTLCLAHIDFASENELERGYEVESPDADTMVLDAVVGIMDPLRGDVKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFRAMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIP---ATEKVHKDGELGLSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 633
            ANDALRTLC+AH DFA    L   ++   PD   +  D +VGI+DPLR DV +AV TAQ AGV VRMVTGDNINTAKAIARQCGI    +G A+E PVFRAM+PAQ+D +LP L+V+ARSSP+DKYLLVTRLNG  IP   A  +   +   G+++ + ++LLLPGYV EW+ A + +GG  +VVGVTGDGTNDAPALKAADVGL+MGI GTKV
Sbjct:  163 ANDALRTLCIAHRDFAP-GTLPADWQDNVPDDAELCCDCIVGIIDPLRSDVIDAVRTAQNAGVTVRMVTGDNINTAKAIARQCGILTA-HGQAIEEPVFRAMTPAQVDAILPNLEVMARSSPDDKYLLVTRLNGFAIPNGKAEWEEKHNNRPGVTWEKDRDLLLPGYVAEWE-ASRPEGG--QVVGVTGDGTNDAPALKAADVGLAMGIAGTKV 371          
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Match: A0A7S3HU65_9STRA (Calcium-transporting ATPase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HU65_9STRA)

HSP 1 Score: 247 bits (631), Expect = 1.490e-72
Identity = 132/217 (60.83%), Postives = 164/217 (75.58%), Query Frame = 1
Query:    1 ANDALRTLCLAHIDFASENELERGYEVESPDADTMVLDAVVGIMDPLRGDVKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFRAMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIP---ATEKVHKDGEL---GLSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 633
            A+ ALRTLCLAH D+ +   L   ++   PD D +VLD +VGI+DPLR DVKEAV  AQ AGV VRMVTGDNI TAKAIARQCGI   E+G A+EGP FR ++PA+ D +LP LQV+ARSSP+DKYLLVTRLNG+GIP   A  +V     +   G+++ +H++L+LPGY EEW+   + +   G+VV VTGDGTNDAPALKAADVG++MGITGTKV
Sbjct:  533 ADKALRTLCLAHKDYPNAAALPENWQENPPDHDNLVLDCIVGIIDPLRSDVKEAVRIAQAAGVTVRMVTGDNIATAKAIARQCGILT-EHGTAIEGPAFRKLTPAEADAILPNLQVMARSSPDDKYLLVTRLNGYGIPNDKAEWEVKMKARIEADGITWEKHRDLILPGYREEWE---ETRPEGGDVVAVTGDGTNDAPALKAADVGMAMGITGTKV 745          
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Match: A0A7S3HT93_9STRA (Calcium-transporting ATPase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT93_9STRA)

HSP 1 Score: 247 bits (631), Expect = 1.620e-72
Identity = 132/217 (60.83%), Postives = 164/217 (75.58%), Query Frame = 1
Query:    1 ANDALRTLCLAHIDFASENELERGYEVESPDADTMVLDAVVGIMDPLRGDVKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFRAMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIP---ATEKVHKDGEL---GLSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADVGLSMGITGTKV 633
            A+ ALRTLCLAH D+ +   L   ++   PD D +VLD +VGI+DPLR DVKEAV  AQ AGV VRMVTGDNI TAKAIARQCGI   E+G A+EGP FR ++PA+ D +LP LQV+ARSSP+DKYLLVTRLNG+GIP   A  +V     +   G+++ +H++L+LPGY EEW+   + +   G+VV VTGDGTNDAPALKAADVG++MGITGTKV
Sbjct:  547 ADKALRTLCLAHKDYPNAAALPENWQENPPDHDNLVLDCIVGIIDPLRSDVKEAVRIAQAAGVTVRMVTGDNIATAKAIARQCGILT-EHGTAIEGPAFRKLTPAEADAILPNLQVMARSSPDDKYLLVTRLNGYGIPNDKAEWEVKMKARIEADGITWEKHRDLILPGYREEWE---ETRPEGGDVVAVTGDGTNDAPALKAADVGMAMGITGTKV 759          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11827.1409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXE6_9PHAE1.650e-10681.48Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A835ZLB8_9STRA4.660e-8772.69Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A835ZDK6_9STRA1.350e-8673.61Calcium-transporting ATPase n=1 Tax=Tribonema minu... [more]
A0A7S3Y3S6_HETAK2.520e-7964.32Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y3V0_HETAK1.800e-7664.32Calcium-transporting ATPase n=5 Tax=Heterosigma ak... [more]
A0A482SEH8_9ARCH2.010e-7665.12HAD family hydrolase n=1 Tax=archaeon TaxID=190666... [more]
W7TSK5_9STRA3.140e-7562.56Calcium-transporting ATPase n=2 Tax=Monodopsidacea... [more]
A0A812WBN1_SYMMI6.480e-7362.62ATP2B1 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S3HU65_9STRA1.490e-7260.83Calcium-transporting ATPase n=1 Tax=Spumella elong... [more]
A0A7S3HT93_9STRA1.620e-7260.83Calcium-transporting ATPase n=2 Tax=Spumella elong... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11827contigH-elongata_contig11827:6751..8120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.4
Seed ortholog evalue4.7e-90
Seed eggNOG ortholog2880.D7G3Y5
KEGG koko:K01537,ko:K05850
KEGG TC3.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map04020,map04022,map04024,map04261,map04925,map04970,map04972
EggNOG free text desc.calcium-transporting ATPase activity
EggNOG OGsCOG0474@1,KOG0204@2759
EC3.6.3.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCation-transporting P-type ATPase, N-terminal
Ec32 orthologEc-19_000810.1
Exons3
Model size633
Cds size633
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11827.1409.1prot_H-elongata_contig11827.1409.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11827 6751..8120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.1794145-CDS-H-elongata_contig11827:6750..69531622929690.1794145-CDS-H-elongata_contig11827:6750..6953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11827 6751..6953 -
1691679120.0271118-CDS-H-elongata_contig11827:6750..69531691679120.0271118-CDS-H-elongata_contig11827:6750..6953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11827 6751..6953 -
1622929690.1992629-CDS-H-elongata_contig11827:7401..76391622929690.1992629-CDS-H-elongata_contig11827:7401..7639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11827 7402..7639 -
1691679120.0383034-CDS-H-elongata_contig11827:7401..76391691679120.0383034-CDS-H-elongata_contig11827:7401..7639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11827 7402..7639 -
1622929690.2155762-CDS-H-elongata_contig11827:7928..81201622929690.2155762-CDS-H-elongata_contig11827:7928..8120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11827 7929..8120 -
1691679120.0475128-CDS-H-elongata_contig11827:7928..81201691679120.0475128-CDS-H-elongata_contig11827:7928..8120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11827 7929..8120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11827.1409.1

>prot_H-elongata_contig11827.1409.1 ID=prot_H-elongata_contig11827.1409.1|Name=mRNA_H-elongata_contig11827.1409.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=211bp
ANDALRTLCLAHIDFASENELERGYEVESPDADTMVLDAVVGIMDPLRGD
VKEAVATAQRAGVMVRMVTGDNINTAKAIARQCGIYDPEYGVALEGPVFR
AMSPAQLDEVLPRLQVLARSSPNDKYLLVTRLNGHGIPATEKVHKDGELG
LSFAQHKNLLLPGYVEEWKCAPQRKGGYGEVVGVTGDGTNDAPALKAADV
GLSMGITGTKV
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mRNA from alignment at H-elongata_contig11827:6751..8120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11827.1409.1 ID=mRNA_H-elongata_contig11827.1409.1|Name=mRNA_H-elongata_contig11827.1409.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1370bp|location=Sequence derived from alignment at H-elongata_contig11827:6751..8120- (Himanthalia elongata Himel1 dioecious)
GCGAACGACGCCCTGCGCACATTATGTCTCGCGCACATAGACTTCGCTTC GGAAAACGAGCTGGAGAGAGGCTACGAGGTGGAGAGCCCCGACGCGGACA CAATGGTTCTCGACGCCGTCGTTGGCATCATGGACCCATTACGCGGGGAC GTAAAGGAAGCGGTGGCCACGGCACAGCGTGCCGGAGTGATGGTTAGTGC CGCGGTTGCATGTTATGTGAATGGAAGTGATTACGGCCAGCGCTAATCGG CGGGAATAGGGGGTAGGGGAGTCCATTATTTTTGCACCATGAGGCTCTGG AGTATTATGTGTCGAATAGGGAGGAAAATGAAAATTTGAAGAGGCGGACT GATCGAGGCGACGACGAACGGATTTGTCCGATGAACGAACGAGTGAACCA GCAAACAGTCCTCGAGTGTCGAAACACCAGACTAATCGACCTCCACCCCT CTATCTTGCCCCTCTATTAATATTGCTGCAGGTCCGGATGGTGACCGGCG ACAATATTAACACCGCTAAGGCCATCGCTCGGCAGTGTGGAATCTACGAT CCGGAGTACGGGGTAGCCCTCGAAGGCCCCGTGTTCCGCGCTATGTCGCC CGCCCAGCTAGACGAGGTTTTGCCGCGGCTGCAGGTCCTGGCGAGATCGT CTCCCAACGACAAATACCTGTTGGTCACCCGGCTCAACGGACACGGGATT CCCGCCACGGAGAAGGTGCGTCGCGTTCCGTTATCATGTAGCTTGACGTG ACAAGAGAGACTTCTCGAGGAGGCGTTTCCCCGAGCGTGGAGTAACAGAT TTTTCGGGAAGGGTGTGGGGCTAAGGGGGAAGTTTTGAAGTTTTTCCTTT TGAGTGTATGAGTAGACCTCAAACTTCGTTTTTCTCCCCCAAGAGGGATG TATAACCTCTAACTTTAATGAGCAACTCCCATTTTCTAAAGAGGTGTACG GTTAATACATACCTTTTTGTATGGCTTTGTTGCGGAAGATAGAGATATTT CTCGAGGAGGCGTTCGCCCGAGCACTGTACGGAACATATTGTCTATCGAG TCTACCAATGTTCCATCGTAGCTATCCGTATACCATTGTTAACTAGGTCA CACGCGCGCCTTTGGGGTGTTCTAAAAAAACCTCCTCAATTTCTTTAGGA ATGGCTAGAGTTGCAAGACAAGGACGGAGAGCTCGGGCTCTCCTTCGCGC AGCACAAGAACCTGCTCCTGCCGGGGTACGTGGAGGAATGGAAATGCGCT CCCCAACGAAAGGGAGGTTACGGAGAGGTTGTAGGCGTTACCGGCGACGG TACGAACGATGCACCCGCGCTCAAAGCGGCTGACGTCGGGCTCTCCATGG GGATCACGGGAACGAAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig11827:6751..8120-

>mRNA_H-elongata_contig11827.1409.1 ID=mRNA_H-elongata_contig11827.1409.1|Name=mRNA_H-elongata_contig11827.1409.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1266bp|location=Sequence derived from alignment at H-elongata_contig11827:6751..8120- (Himanthalia elongata Himel1 dioecious)
GCGAACGACGCCCTGCGCACATTATGTCTCGCGCACATAGACTTCGCTTC
GGAAAACGAGCTGGAGAGAGGCTACGAGGTGGAGAGCCCCGACGCGGACA
CAATGGTTCTCGACGCCGTCGTTGGCATCATGGACCCATTACGCGGGGAC
GTAAAGGAAGCGGTGGCCACGGCACAGCGTGCCGGAGTGATGGCGAACGA
CGCCCTGCGCACATTATGTCTCGCGCACATAGACTTCGCTTCGGAAAACG
AGCTGGAGAGAGGCTACGAGGTGGAGAGCCCCGACGCGGACACAATGGTT
CTCGACGCCGTCGTTGGCATCATGGACCCATTACGCGGGGACGTAAAGGA
AGCGGTGGCCACGGCACAGCGTGCCGGAGTGATGGTCCGGATGGTGACCG
GCGACAATATTAACACCGCTAAGGCCATCGCTCGGCAGTGTGGAATCTAC
GATCCGGAGTACGGGGTAGCCCTCGAAGGCCCCGTGTTCCGCGCTATGTC
GCCCGCCCAGCTAGACGAGGTTTTGCCGCGGCTGCAGGTCCTGGCGAGAT
CGTCTCCCAACGACAAATACCTGTTGGTCACCCGGCTCAACGGACACGGG
ATTCCCGCCACGGAGAAGGTGCGTCCGGATGGTGACCGGCGACAATATTA
ACACCGCTAAGGCCATCGCTCGGCAGTGTGGAATCTACGATCCGGAGTAC
GGGGTAGCCCTCGAAGGCCCCGTGTTCCGCGCTATGTCGCCCGCCCAGCT
AGACGAGGTTTTGCCGCGGCTGCAGGTCCTGGCGAGATCGTCTCCCAACG
ACAAATACCTGTTGGTCACCCGGCTCAACGGACACGGGATTCCCGCCACG
GAGAAGGTGCACAAGGACGGAGAGCTCGGGCTCTCCTTCGCGCAGCACAA
GAACCTGCTCCTGCCGGGGTACGTGGAGGAATGGAAATGCGCTCCCCAAC
GAAAGGGAGGTTACGGAGAGGTTGTAGGCGTTACCGGCGACGGTACGAAC
GATGCACCCGCGCTCAAAGCGGCTGACGTCGGGCTCTCCATGGGGATCAC
GGGAACGAAGGTTACAAGGACGGAGAGCTCGGGCTCTCCTTCGCGCAGCA
CAAGAACCTGCTCCTGCCGGGGTACGTGGAGGAATGGAAATGCGCTCCCC
AACGAAAGGGAGGTTACGGAGAGGTTGTAGGCGTTACCGGCGACGGTACG
AACGATGCACCCGCGCTCAAAGCGGCTGACGTCGGGCTCTCCATGGGGAT
CACGGGAACGAAGGTT
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