mRNA_H-elongata_contig6499.14088.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE) HSP 1 Score: 129 bits (323), Expect = 2.000e-30 Identity = 62/148 (41.89%), Postives = 96/148 (64.86%), Query Frame = 1
Query: 94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQDCH 537
++P+TSR YR NP +A QV+A++ +YL GL++ SP++SP+VV K SG + T ++ +L + Q+PIPR D+ LD L +S FDM S FH I V PLT F T+SGL+E L +P G+S +PG+F + +++ +++ H
Sbjct: 270 SAPVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLH 417
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5LRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRK5_9PHAE) HSP 1 Score: 127 bits (318), Expect = 5.920e-30 Identity = 62/148 (41.89%), Postives = 95/148 (64.19%), Query Frame = 1
Query: 94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQDCH 537
++P+ SR YR NP +A QV+A++ +YL VGL++ SP++SP+VV K SG + T ++ +L + Q+PIPR D LD L +S FDM S FH I V PLT F T+SGL+E L +P G+S +PG+F + +++ +++ H
Sbjct: 27 SAPVASRPYRANPPVAKQVDAILDQYLAVGLIQHSTSPYSSPLVVMPKKSGSVRITVNYRKLNQLCALIQLPIPRVDYTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLH 174
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5JV14_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV14_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.540e-28 Identity = 58/146 (39.73%), Postives = 93/146 (63.70%), Query Frame = 1
Query: 94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQD 531
++P+TSR Y NP +A QV+A++ + L GL++ SP++SP+VV K SG + T ++ +L + Q+PIPR D+ LD L +S FDM S FH I V + LT F T+SGL+E L +P G+S +PG+F + +++ +++
Sbjct: 8 SAPVTSRPYHVNPPVAKQVDAILDQCLAAGLIQHSTSPYSSPLVVIPKKSGGVHITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRETIHLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKN 153
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5K5K4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5K4_9PHAE) HSP 1 Score: 120 bits (300), Expect = 5.110e-28 Identity = 58/138 (42.03%), Postives = 88/138 (63.77%), Query Frame = 1
Query: 88 NMNSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYF 501
+ ++P+TSR YR NP +A QV+A++ +YL L+++ SP++SP+VV K G + T ++ +L + Q+PIPR D+ LD L +S FDM S FH I V PLT F T+SG++E L +P G+S +PG+F
Sbjct: 22 SFSAPVTSRPYRVNPPVAKQVDAILDQYLAAALIQQSTSPYSSPLVVIPKTPGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTTPLTAFVTSSGVFEWLKMPQGSSAAPGFF 159
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5KWU8_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU8_9PHAE) HSP 1 Score: 115 bits (289), Expect = 2.450e-27 Identity = 57/143 (39.86%), Postives = 88/143 (61.54%), Query Frame = 1
Query: 94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKA 522
++P+T R YR +P +A QV+A++ +YL GL++ SP++SP+V K SG + T ++ +L + Q+PIPR D+ LD L +S F+M FH I V PLT F T+SGL+E L +P G+S +PG+F + K+
Sbjct: 24 SAPVTFRPYRVDPPVARQVDAILDQYLAAGLIQHSTSPYSSPLVFIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFEMKFSFHQITVHRDTIPLTAFVTSSGLFEWLKLPQGSSAAPGWFAKLSTKS 166
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5JJR1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR1_9PHAE) HSP 1 Score: 118 bits (295), Expect = 8.340e-27 Identity = 60/143 (41.96%), Postives = 93/143 (65.03%), Query Frame = 1
Query: 94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKA 522
++P+TSR YR NP +A V+A++ +YL GL++ SP++SP+VV K SG + T ++ +L + Q+PIPR D+ LD L +S FD+ S FH I V + PLT F T+SGL+E L +P G+S +PG+F + +++A
Sbjct: 27 SAPVTSRPYRVNPPVAKIVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDIKSSFHQITVHDTI-PLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEA 168
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5JAN9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAN9_9PHAE) HSP 1 Score: 112 bits (281), Expect = 6.010e-25 Identity = 56/145 (38.62%), Postives = 90/145 (62.07%), Query Frame = 1
Query: 94 NSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQ 528
++P+TSR YR NP +A QV+A++ +YL GL++R S ++ P+VV K SG + T ++ +L + Q+PI + D+ LD L +S D S FH I V PLT F T+SGL+E L +P G+S +PG+F + +++ ++
Sbjct: 38 SAPVTSRPYRVNPPVAKQVDAILDQYLAAGLIQRSTSRYSRPLVVIPKKSGGVRITVNYRKLNKLCALSQLPISQVDDTLDKLLKGRIYSLLDTKSSFHQITVHRDTTPLTAFVTSSGLFEWLKMPQGSSTAPGWFCKVVNEVIR 182
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5K9N3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N3_9PHAE) HSP 1 Score: 106 bits (265), Expect = 5.590e-24 Identity = 57/139 (41.01%), Postives = 86/139 (61.87%), Query Frame = 1
Query: 121 RYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQDCH 537
RY+PV A QV+A++ +YL GL++ SP++SP+VV K SG + T +F +L + Q+ IPR D+ LD L +S FDM S FH I V PLT T+SGL+E L +P G+S +PG+F + + + +++ H
Sbjct: 18 RYSPV-AKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNFSKLNKRCALSQLWIPRVDDTLDKLLRGRVYSLFDMKSSFHQIMVHRDTIPLTVSVTSSGLFEWLKMPQGSSAAPGWFCKAVDEVIKNLH 155
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5L4D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D3_9PHAE) HSP 1 Score: 109 bits (273), Expect = 8.200e-24 Identity = 54/134 (40.30%), Postives = 85/134 (63.43%), Query Frame = 1
Query: 130 PVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQD 531
P +A QV+A++ +YL GL++ SP++SP+VV + SG + T + RL + Q+PIPR D+ LD L +S FDM S FH I V PLT F T+SGL+E L +P G+S +PG+F++ +++ +++
Sbjct: 238 PPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPRKSGGVHITVIYRRLNKLCALSQLPIPRVDDTLDKLLKGRTYSLFDMKSSFHQITVHRDTTPLTAFVTSSGLFEWLKMPQGSSAAPGWFRKVVNEVIKN 371
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Match: A0A6H5JDP0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP0_9PHAE) HSP 1 Score: 107 bits (267), Expect = 4.760e-23 Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 118 YRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLSGKILSTSDFIRLKDDTIMPQIPIPRTDELLDTLGSASFFSSFDMMSEFH*IDVGEKRGPLTTFYTTSGLYEVLVIPMGTSGSPGYFQRFLHKALQ 528
YR NP +A QV+A++ ++L GL++ SP++SP+VV K SG I T ++ +L + Q+PIPR D+ D L + FDM S FH I V PLT F T+SGL+E L +P G+S +PG+ + +++ ++
Sbjct: 378 YRANPPVAKQVDAILDQHLAAGLIQHSTSPYSSPLVVIPKKSGGIRITVNYRKLNKLCALSQLPIPRVDDTWDNLLKGRIYFLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWLCKVVNEVIK 514 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6499.14088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6499.14088.1 >prot_H-elongata_contig6499.14088.1 ID=prot_H-elongata_contig6499.14088.1|Name=mRNA_H-elongata_contig6499.14088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp MNSPITSRSYRYNPVIAHQVEAVIARYLVVGLMRRPQSPHASPVVVALKLback to top mRNA from alignment at H-elongata_contig6499:1690..2399- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6499.14088.1 ID=mRNA_H-elongata_contig6499.14088.1|Name=mRNA_H-elongata_contig6499.14088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=710bp|location=Sequence derived from alignment at H-elongata_contig6499:1690..2399- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6499:1690..2399- >mRNA_H-elongata_contig6499.14088.1 ID=mRNA_H-elongata_contig6499.14088.1|Name=mRNA_H-elongata_contig6499.14088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig6499:1690..2399- (Himanthalia elongata Himel1 dioecious)back to top |