prot_H-elongata_contig64967.14084.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64967.14084.1
Unique Nameprot_H-elongata_contig64967.14084.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: D7FRC3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRC3_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.330e-23
Identity = 51/71 (71.83%), Postives = 54/71 (76.06%), Query Frame = 0
Query:    1 MSRDRDRGRYGREDSRERGREIGH-----PGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 66
            MSRDR RG YGR+DSR R           PGKVSLLVRNLTFRTR +DV+ IF DFGDVRDVYLPLDFGTQ
Sbjct:    1 MSRDRGRGGYGRDDSRGRDXXXXXXXXSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71          
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A7S2V1C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.610e-12
Identity = 25/42 (59.52%), Postives = 36/42 (85.71%), Query Frame = 0
Query:   25 PGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 66
            P  VSLLVRN+++RTR ED+R+IF  +GD+RDVYLP+D+ ++
Sbjct:   25 PDGVSLLVRNISYRTRAEDLRYIFSKYGDIRDVYLPMDYHSK 66          
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A4D9CT26_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT26_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.620e-10
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 0
Query:   25 PGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 66
            P ++SLLVRNL F TR EDVR +F  +G+V+DVY+P+++ T+
Sbjct:   41 PRRISLLVRNLGFDTRQEDVRRLFDKYGEVKDVYIPMNYHTK 82          
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A7S2BL32_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL32_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.910e-9
Identity = 23/50 (46.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:   17 ERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 66
            +R R  G  G+VSLLVRN+++  R ED+   F+++G++RDVY+P+D+ +Q
Sbjct:   16 DRDRPAGEDGQVSLLVRNISYDCRKEDLADRFREYGEIRDVYVPVDYYSQ 65          
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A061RGN7_9CHLO (FUS-interacting serine-arginine-rich protein 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RGN7_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 2.840e-9
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 0
Query:   10 YGREDSRERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 66
            YGRE+          P + S+L+RNL+  TRTED+R++ + +G VRDVYLPLD+ T+
Sbjct:    6 YGREE----------PTRTSILLRNLSRSTRTEDIRYLSEKYGPVRDVYLPLDYYTK 52          
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A7S3HCI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCI8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.000e-9
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 0
Query:   23 GHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 66
            G     SLLVRNL++R R +++R IF  +GD+RDVY+P D+ TQ
Sbjct:   40 GPEATTSLLVRNLSYRVRADEIRRIFVRYGDIRDVYIPQDYHTQ 83          
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: S7V383_TOXGG (RNA recognition motif-containing protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S7V383_TOXGG)

HSP 1 Score: 58.5 bits (140), Expect = 9.280e-9
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   17 ERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGT 65
            +RGR+     ++SLLVRNL+FR+  ++VR  F++FG +RDVYLPLD+ T
Sbjct:    6 DRGRQ-----RLSLLVRNLSFRSSPDEVRAAFEEFGPIRDVYLPLDYHT 49          
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A061RID6_9CHLO (FUS-interacting serine-arginine-rich protein 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RID6_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 1.390e-8
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 0
Query:   10 YGREDSRERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 66
            YGRE+          P + S+L+RNL+  TRTED+R++ + +G VRDVYLPLD+ T+
Sbjct:    6 YGREE----------PTRTSILLRNLSRSTRTEDIRYLSEKYGPVRDVYLPLDYYTK 52          
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A0F7V4X2_TOXGV (RNA recognition motif-containing protein n=1 Tax=Toxoplasma gondii (strain ATCC 50861 / VEG) TaxID=432359 RepID=A0A0F7V4X2_TOXGV)

HSP 1 Score: 58.5 bits (140), Expect = 2.110e-8
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   17 ERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGT 65
            +RGR+     ++SLLVRNL+FR+  ++VR  F++FG +RDVYLPLD+ T
Sbjct:    6 DRGRQ-----RLSLLVRNLSFRSSPDEVRAAFEEFGPIRDVYLPLDYHT 49          
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: F0VZD6_9STRA (Splicing factor putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZD6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.920e-8
Identity = 21/39 (53.85%), Postives = 33/39 (84.62%), Query Frame = 0
Query:   28 VSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 66
            +SLL+RN++ R R++++R  F++FGDVRDVY+P DF T+
Sbjct:    7 ISLLIRNISRRMRSDELRKTFEEFGDVRDVYIPRDFHTR 45          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRC3_ECTSI1.330e-2371.83RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V1C3_9STRA5.610e-1259.52Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CT26_9STRA3.620e-1054.76RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2BL32_9STRA1.910e-946.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A061RGN7_9CHLO2.840e-947.37FUS-interacting serine-arginine-rich protein 1 n=1... [more]
A0A7S3HCI8_9STRA3.000e-952.27Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
S7V383_TOXGG9.280e-953.06RNA recognition motif-containing protein n=15 Tax=... [more]
A0A061RID6_9CHLO1.390e-847.37FUS-interacting serine-arginine-rich protein 1 n=1... [more]
A0A0F7V4X2_TOXGV2.110e-853.06RNA recognition motif-containing protein n=1 Tax=T... [more]
F0VZD6_9STRA4.920e-853.85Splicing factor putative n=1 Tax=Albugo laibachii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 30..64
e-value: 1.3E-5
score: 24.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..66
e-value: 2.8E-8
score: 35.8
NoneNo IPR availablePANTHERPTHR23147:SF149SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30coord: 9..64
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 9..64
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 12..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64967contigH-elongata_contig64967:1018..1218 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64967.14084.1mRNA_H-elongata_contig64967.14084.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64967 4..1350 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64967.14084.1 ID=prot_H-elongata_contig64967.14084.1|Name=mRNA_H-elongata_contig64967.14084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MSRDRDRGRYGREDSRERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKD
FGDVRDVYLPLDFGTQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf