mRNA_H-elongata_contig64967.14084.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64967.14084.1
Unique NamemRNA_H-elongata_contig64967.14084.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: D7FRC3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRC3_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.440e-20
Identity = 51/71 (71.83%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:  133 MSRDRDRGRYGREDSRERGREIGH-----PGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 330
            MSRDR RG YGR+DSR R           PGKVSLLVRNLTFRTR +DV+ IF DFGDVRDVYLPLDFGTQ
Sbjct:    1 MSRDRGRGGYGRDDSRGRDXXXXXXXXSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQ 71
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BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A7S2V1C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.050e-8
Identity = 25/39 (64.10%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  205 PGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDF 321
            P  VSLLVRN+++RTR ED+R+IF  +GD+RDVYLP+D+
Sbjct:   25 PDGVSLLVRNISYRTRAEDLRYIFSKYGDIRDVYLPMDY 63
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BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A4D9CT26_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT26_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.820e-7
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:  205 PGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 330
            P ++SLLVRNL F TR EDVR +F  +G+V+DVY+P+++ T+
Sbjct:   41 PRRISLLVRNLGFDTRQEDVRRLFDKYGEVKDVYIPMNYHTK 82
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BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A061RGN7_9CHLO (FUS-interacting serine-arginine-rich protein 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RGN7_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 1.620e-6
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:  160 YGREDSRERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 330
            YGRE+          P + S+L+RNL+  TRTED+R++ + +G VRDVYLPLD+ T+
Sbjct:    6 YGREE----------PTRTSILLRNLSRSTRTEDIRYLSEKYGPVRDVYLPLDYYTK 52
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BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A7S2BL32_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL32_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.350e-6
Identity = 23/50 (46.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  181 ERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 330
            +R R  G  G+VSLLVRN+++  R ED+   F+++G++RDVY+P+D+ +Q
Sbjct:   16 DRDRPAGEDGQVSLLVRNISYDCRKEDLADRFREYGEIRDVYVPVDYYSQ 65
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BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A7S3HCI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCI8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.180e-6
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  199 GHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 330
            G     SLLVRNL++R R +++R IF  +GD+RDVY+P D+ TQ
Sbjct:   40 GPEATTSLLVRNLSYRVRADEIRRIFVRYGDIRDVYIPQDYHTQ 83
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BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: S7V383_TOXGG (RNA recognition motif-containing protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S7V383_TOXGG)

HSP 1 Score: 57.0 bits (136), Expect = 7.610e-6
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:  181 ERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGT 327
            +RGR+     ++SLLVRNL+FR+  ++VR  F++FG +RDVYLPLD+ T
Sbjct:    6 DRGRQ-----RLSLLVRNLSFRSSPDEVRAAFEEFGPIRDVYLPLDYHT 49
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BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A061RID6_9CHLO (FUS-interacting serine-arginine-rich protein 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RID6_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 1.140e-5
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:  160 YGREDSRERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 330
            YGRE+          P + S+L+RNL+  TRTED+R++ + +G VRDVYLPLD+ T+
Sbjct:    6 YGREE----------PTRTSILLRNLSRSTRTEDIRYLSEKYGPVRDVYLPLDYYTK 52
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BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A485LK32_9STRA (Aste57867_22331 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LK32_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.090e-5
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  130 TMSRDRDRGRYGREDSRERGREIGHPGK--VSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGTQ 330
            + SR RDR    R+D +++ R  G P K  +SLLVRNL   T  +DV+ +F   G+VRDVY PLDF T+
Sbjct:   35 STSRGRDR-TNSRDDDKDKSR--GGPLKPGISLLVRNLNKSTSADDVKEVFGQHGEVRDVYTPLDFYTK 100
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BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Match: A0A0F7V4X2_TOXGV (RNA recognition motif-containing protein n=1 Tax=Toxoplasma gondii (strain ATCC 50861 / VEG) TaxID=432359 RepID=A0A0F7V4X2_TOXGV)

HSP 1 Score: 57.0 bits (136), Expect = 2.890e-5
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:  181 ERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKDFGDVRDVYLPLDFGT 327
            +RGR+     ++SLLVRNL+FR+  ++VR  F++FG +RDVYLPLD+ T
Sbjct:    6 DRGRQ-----RLSLLVRNLSFRSSPDEVRAAFEEFGPIRDVYLPLDYHT 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64967.14084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FRC3_ECTSI4.440e-2071.83RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V1C3_9STRA1.050e-864.10Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CT26_9STRA3.820e-754.76RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A061RGN7_9CHLO1.620e-647.37FUS-interacting serine-arginine-rich protein 1 n=1... [more]
A0A7S2BL32_9STRA2.350e-646.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3HCI8_9STRA3.180e-652.27Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
S7V383_TOXGG7.610e-653.06RNA recognition motif-containing protein n=15 Tax=... [more]
A0A061RID6_9CHLO1.140e-547.37FUS-interacting serine-arginine-rich protein 1 n=1... [more]
A0A485LK32_9STRA2.090e-547.83Aste57867_22331 protein n=1 Tax=Aphanomyces stella... [more]
A0A0F7V4X2_TOXGV2.890e-553.06RNA recognition motif-containing protein n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64967contigH-elongata_contig64967:4..1350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue9e-19
Seed eggNOG ortholog2880.D7FRC3
Preferred nameSCL25A
KEGG koko:K12891,ko:K12900
KEGG Pathwayko03040,ko05168,map03040,map05168
GOsGO:0000184,GO:0000244,GO:0000245,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000381,GO:0000387,GO:0000395,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005845,GO:0005846,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006376,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006408,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016482,GO:0016604,GO:0016607,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032386,GO:0032388,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0033119,GO:0034248,GO:0034518,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035061,GO:0036260,GO:0042221,GO:0042795,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045292,GO:0045934,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048024,GO:0048025,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050686,GO:0050733,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051030,GO:0051049,GO:0051050,GO:0051082,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060341,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097064,GO:0097159,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1903311,GO:1903312,GO:1903313,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.RNA binding
EggNOG OGsKOG0118@1,KOG0118@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-26_002620.1
Exons2
Model size1153
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64967.14084.1prot_H-elongata_contig64967.14084.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64967 1018..1218 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.3746483-UTR-H-elongata_contig64967:3..6721622931035.3746483-UTR-H-elongata_contig64967:3..672Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64967 4..672 -
1691679671.1057613-UTR-H-elongata_contig64967:3..6721691679671.1057613-UTR-H-elongata_contig64967:3..672Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64967 4..672 -
1622931035.3858135-UTR-H-elongata_contig64967:866..10171622931035.3858135-UTR-H-elongata_contig64967:866..1017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64967 867..1017 -
1691679671.1245108-UTR-H-elongata_contig64967:866..10171691679671.1245108-UTR-H-elongata_contig64967:866..1017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64967 867..1017 -
1622931035.4080951-UTR-H-elongata_contig64967:1218..13501622931035.4080951-UTR-H-elongata_contig64967:1218..1350Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64967 1219..1350 -
1691679671.1460288-UTR-H-elongata_contig64967:1218..13501691679671.1460288-UTR-H-elongata_contig64967:1218..1350Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64967 1219..1350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.3962843-CDS-H-elongata_contig64967:1017..12181622931035.3962843-CDS-H-elongata_contig64967:1017..1218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64967 1018..1218 -
1691679671.1353602-CDS-H-elongata_contig64967:1017..12181691679671.1353602-CDS-H-elongata_contig64967:1017..1218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64967 1018..1218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64967.14084.1

>prot_H-elongata_contig64967.14084.1 ID=prot_H-elongata_contig64967.14084.1|Name=mRNA_H-elongata_contig64967.14084.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MSRDRDRGRYGREDSRERGREIGHPGKVSLLVRNLTFRTRTEDVRHIFKD
FGDVRDVYLPLDFGTQ*
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mRNA from alignment at H-elongata_contig64967:4..1350-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64967.14084.1 ID=mRNA_H-elongata_contig64967.14084.1|Name=mRNA_H-elongata_contig64967.14084.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1347bp|location=Sequence derived from alignment at H-elongata_contig64967:4..1350- (Himanthalia elongata Himel1 dioecious)
GGTACATTTAATTGCGTTTCATCGGGGAAGTTTTACGTGGAACCAGGGTC
CACGCCTCGCGCCTCCACAACATTCCTCAATCGGTCACAGACCCACACTA
ACCCTAACGCCTGCATCTCTATCGCCGCCACGATGAGCCGTGACCGTGAC
AGGGGAAGGTATGGCCGAGAAGACTCCCGGGAACGTGGGAGAGAAATTGG
GCATCCGGGCAAGGTGTCTCTCCTGGTTCGCAATCTTACCTTCCGGACTC
GCACGGAAGACGTGAGGCACATCTTTAAAGACTTCGGCGACGTTCGCGAC
GTGTACCTCCCTCTCGACTTCGGCACACAGTGAGTTAATCGGTCGGTGTC
TTTGAAAAGGAAGAAGAAGGGATGGTGAACCATCTATTACGTATAGATCC
GCTGAGCGAGTTAGACGTGCCTATCCTCGGGCTAGATCTCGGCACCCTAG
TTTTAGTAGGCTCCTACTTCCGCTAGATTATCAAGTTATACTCCGGTAGG
GTACGACACCCTTGACCCATGCACTCCGTTTGTTCTCGATCCCGCGCATG
TCGAGCGGCCGAGTACATAGTGGCGTCGTCCCTCGTCGTGCTGTCGGTGA
TCGATTATTTTTTAACGCCAGAGTACGGAAATCCCTGCGCCCCTTCAGTT
CGTTCGCCTATCCCGATGCACACGGTAGTTTTTTGCCTCCTTTTGAAACC
AAGAGTCTCTCGCTATCTCTACAGAAATAAAGTCGGATTTCGCAAGGTCG
GCTCTCTCTTGAAATGAAGGGCATCCATCCATTTTCCTTTTGAGTTGTCC
CTTTCATTCCTTTCAAATTACGAGTGATTTAAATAGTTTGCACCCTCTAC
ACAAACTATTCCAAAATATACTGACCACTCTGGTATCAATAGCTACTTAT
ACTTAAAAAGCAAGCTTGCACGATCTCCCAGCTGTTGTTGTTTCTCTTTA
TGAATAATGCAACCATGTGACGATTTTGTGCTCAAAGGTAGTAATATTAC
ACATTCGAACCCGACGATAGTTGGTCCCCCGGATGGCACCTCTCACGGCG
CTAAGAAGGTGTGGATGTTCGGAGGGTTGGAATGAGTTCAATTAAAAAAA
AAGAAAAGACTACAGGCTTTCAAGTCATCAGTGTAATCATCTTAATTCCT
CTATACAACCTACCGCTGTTCTCTTTTTAACTAAGCACAAACGCAGACGC
TCTATATATTTAAAACCTTTTCGTGTCTTTCGTCCAAGAAAAGTCGAATC
TGACGCTACCATGACCCCACCCTCCCTCTGCCTGGAATTTTACCGAACCC
CCCCGGGATAAAGGAAAGGGATGGGCACAGAAAGCTGTACCAGGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig64967:4..1350-

>mRNA_H-elongata_contig64967.14084.1 ID=mRNA_H-elongata_contig64967.14084.1|Name=mRNA_H-elongata_contig64967.14084.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig64967:4..1350- (Himanthalia elongata Himel1 dioecious)
ATGAGCCGTGACCGTGACAGGGGAAGGTATGGCCGAGAAGACTCCCGGGA
ACGTGGGAGAGAAATTGGGCATCCGGGCAAGGTGTCTCTCCTGGTTCGCA
ATCTTACCTTCCGGACTCGCACGGAAGACGTGAGGCACATCTTTAAAGAC
TTCGGCGACGTTCGCGACGTGTACCTCCCTCTCGACTTCGGCACACAGTG
AATGAGCCGTGACCGTGACAGGGGAAGGTATGGCCGAGAAGACTCCCGGG
AACGTGGGAGAGAAATTGGGCATCCGGGCAAGGTGTCTCTCCTGGTTCGC
AATCTTACCTTCCGGACTCGCACGGAAGACGTGAGGCACATCTTTAAAGA
CTTCGGCGACGTTCGCGACGTGTACCTCCCTCTCGACTTCGGCACACAGT
GA
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