mRNA_H-elongata_contig64879.14077.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: D7FS39_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS39_ECTSI) HSP 1 Score: 230 bits (586), Expect = 8.040e-66 Identity = 142/307 (46.25%), Postives = 177/307 (57.65%), Query Frame = 1
Query: 16 KGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWI--TRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPA-------------------------------AGAITI------------------------------RDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQVS 747
+ V+LP L +S +S R APLP+VL+HGAPGSGKS++AR+L CGLN +VAGGDVG LG ASSELSG++RW VA++M+EAEAALGDR K MSENARSAL A+LL TGE + GF+M+LT+S PQD+DEA+LDRVDEV+ +PTPG ER L RQYF+ YL+HD PA A A T R G G+VRLS+ FR++A+ L+ LAV+SEGF+GRDM FFSAVQ +
Sbjct: 536 RAVLLP------LLGKSSHCSSSYRRGAPLPHVLIHGAPGSGKSVLARRLVGMCGLNTVVVAGGDVGSLGRNASSELSGLMRWAGGXXXXXXXXXXXXVAVVMDEAEAALGDRRKKGMSENARSALNAVLLSTGELRAGFLMVLTTSCPQDLDEAILDRVDEVVHLPTPGFPERARLIRQYFSSYLHHDPPADFLRATAVLGSAEARAEFVESRREGGRPTAMAKAATXXXXXXXXXXXXXQPEAHLPADTTEDEKENPRTGGGGGVVRLSDGFRAKAAGLMAMLAVRSEGFYGRDMEHFFSAVQAA 836
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A6H5L1Y3_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y3_9PHAE) HSP 1 Score: 208 bits (530), Expect = 1.120e-59 Identity = 114/197 (57.87%), Postives = 139/197 (70.56%), Query Frame = 1
Query: 7 RALKGVILPSDLEQRLC---SLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWI--TRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVP 582
R + + PS L C + A + +S R APLPNVL+HGAPGSGKS++AR+L CGLN +VAGGDVG LG ASSELSG++RW VA++M+EAEAALGDR K MSENARSAL A+LL TGE + GF+M+LT+SRPQD+DEA+LDRVDEV+ +PTPGL ER L RQYF YL+HD P
Sbjct: 61 RDIPHTLAPSRLRALWCFYTTHAVTASSSYRRGAPLPNVLIHGAPGSGKSVLARRLVGMCGLNTVVVAGGDVGSLGRNASSELSGLMRWAGGXXXXXXXXXXXXVAVVMDEAEAALGDRRKKGMSENARSALNAVLLSTGELRAGFLMVLTTSRPQDLDEAILDRVDEVVHLPTPGLPERARLIRQYFCSYLHHDPP 257
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A8J2T0E4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0E4_9STRA) HSP 1 Score: 179 bits (453), Expect = 2.510e-48 Identity = 105/248 (42.34%), Postives = 152/248 (61.29%), Query Frame = 1
Query: 19 GVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAITIRDGHTSGLVRLSENFRS-------EASSLVETLAVKSEGFHGRDMARFFSAVQ 741
G+ILP DL +RL LA SIR + RAPL ++LL G PG+GK++VAR+L++ GL+ AI++GGDVGPLGA AS+E+ IL W R+ + G+ L ++EAEAAL DRG+ +SE A SAL A L HT + FM++L ++RP D+D AVLDRVDE + +P P R++L YFA + P+ + D R+ + FR+ + + LA K+EG+ GR+ ++ +VQ
Sbjct: 422 GIILPEDLGKRLDQLAKSIRGARKLRAPLRHLLLFGPPGTGKTMVARRLSQISGLDWAIMSGGDVGPLGAAASTEIHAILNWARRSPK------GLLLFVDEAEAALCDRGRPDLSEEAISALNAFLFHTSDPSYTFMLVLATNRPGDLDAAVLDRVDEAVEIPLPDEGAREKLLHLYFAMAFDRPAPSTRLGRLLD-------RILKRFRAPDVCIALDRKEAIRALAKKTEGYSGRECSKLMLSVQ 656
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A7S3JSF0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF0_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.340e-42 Identity = 97/243 (39.92%), Postives = 154/243 (63.37%), Query Frame = 1
Query: 19 GVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAITIRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQVS 747
GVIL + + RL +LA S+R + APL +++L+G PG+GK+LVAR+LA A GL+ A+ +GGD+GPLG +A++EL +L W R+ + G+ L ++EAEAAL DRG+ ++SE+A SAL A L HT E +++L ++RP DID AVLDR+DEVI++P P R +L + YF + D A ++ + + ++ +F + S+ + L +EGF GR++A+ ++Q +
Sbjct: 389 GVILQNSIGPRLEALAHSLRGARRLHAPLRHIMLYGPPGTGKTLVARKLAAASGLDWAVASGGDIGPLGPSATTELHKLLNWARRSPR------GLLLFLDEAEAALADRGRPNLSEDAVSALNAFLTHTSEPSYSVVLVLATNRPADIDAAVLDRIDEVIQLPLPDSHCRAQLLQLYFDQCFITD-DARMRYSLFTSNRNKRPCIASDF--DVSAHLNDLLPYTEGFSGREIAKLMLSIQAA 622
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A7S3NKV4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKV4_9STRA) HSP 1 Score: 162 bits (411), Expect = 3.870e-42 Identity = 94/243 (38.68%), Postives = 142/243 (58.44%), Query Frame = 1
Query: 13 LKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAITIRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQ 741
L VIL + RL LASS R + AP ++LLHG PG+GK+L A++LA+A L+ A+++GGDVGPLG + L + RW + +RG V + ++EAEA L R K ++E+ R+AL A L HTG F+++L ++RP+D+DEAVLDR+D+ + + PGL+ R LA YF +YL P + I G + +A + +ET+A ++GF R++ + AVQ
Sbjct: 482 LDDVILTDQVRSRLLQLASSTRNAKRNDAPFRHILLHGPPGTGKTLTAKKLAQASSLDYALMSGGDVGPLGVHGVTALHSLFRW-AHSSERG-----VLIFIDEAEAFLASRDKARLTEHMRNALNAFLYHTGTPGNSFVIVLATNRPEDLDEAVLDRIDDAVEIGLPGLSHRLLLAEMYFNKYLRRSYPKSFFSRIISSCRLGTKYKTITISDDAVAQLETIANLTDGFSAREIEKLMVAVQ 718
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: F0Y2W0_AURAN (AAA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2W0_AURAN) HSP 1 Score: 157 bits (397), Expect = 4.800e-41 Identity = 95/250 (38.00%), Postives = 145/250 (58.00%), Query Frame = 1
Query: 13 LKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAG-------AITIRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQ 741
L GV+LP DL R+ LA + R + RAP ++LLHG PG+GK+LVA++LAKA GL A+++GGDVGPLGA + L + RW + GV + ++EAEA L R + ++E+ R+AL A L TG F+++L ++R +D+DEAVLDRVDE + P L R+ LA Y+ARY+ V A A+T + +++ ++++ +A ++ F GR++ + F AVQ
Sbjct: 266 LDGVVLPGDLRTRVLQLAVATRNAKRNRAPFRHMLLHGPPGTGKTLVAKRLAKASGLEYALMSGGDVGPLGADGVTALHTLFRWARTSD------TGVLIFIDEAEAFLASRSRSKLTEHMRNALNAFLYQTGSPTKSFILVLATNRAEDLDEAVLDRVDETLYFGLPALPARRSLAALYYARYVTSLVYAPSRFRALLRALTFAPAALAVAPDVTD-------AVLDDVAKLTDDFSGREIEKLFVAVQ 502
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A812LTK1_9DINO (Atad3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LTK1_9DINO) HSP 1 Score: 154 bits (388), Expect = 3.850e-40 Identity = 96/246 (39.02%), Postives = 148/246 (60.16%), Query Frame = 1
Query: 10 ALKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAIT--IRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQ 741
+L VIL D+ R+ LA + R + A AP +++ +G PG+GK+++A++LA++ G++ AI++GGDVGPLG A +EL + + R+ QRG + L ++EA+A L R K +MSE R+AL A+L TGEA FMM+L ++RP D+D AVLDR DE + P RK L RQYF +Y+ D ++G+ + S + L F E ++ +A ++EGF GR +A+ +VQ
Sbjct: 210 SLTDVILRKDIADRVQRLAVATRNTRANGAPYRHMMFYGPPGTGKTMLAKRLARSSGMDYAIMSGGDVGPLGKEAVTELHRLFDYAERS-QRG-----MLLFIDEADAFLASRSKAAMSEEQRNALNALLFRTGEASDRFMMVLATNRPGDLDSAVLDRTDESLLFDLPDAEARKALVRQYFKKYIT-DAGSSGSGVGGLMGFKRSAKIILDSGFSDE---WLDRVAERTEGFSGRGIAKLMLSVQ 445
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A7S1CAP0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAP0_9STRA) HSP 1 Score: 153 bits (386), Expect = 4.600e-40 Identity = 93/256 (36.33%), Postives = 145/256 (56.64%), Query Frame = 1
Query: 4 PRALKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAITIRDGHTSGLVRLSENFRSEASSL----------VETLAVKSEGFHGRDMARFFSAVQ 741
P + V+LP +L +++ LA S R + APL +VL +G PG+GK++VA +LA+ CGL+ A+++GGDV PLG+ A +EL + W G+ G+ L ++E +A LG R +V +SE+ R+AL A+L TG FM+++ ++RP D+D AV DR+DE + P L R++L RQYF YL +R G +G L F+ A+ + LA ++EGF GR +++ +VQ
Sbjct: 172 PTGFEDVVLPEELAEQVHRLALSTRNAKLNHAPLRHVLFYGPPGTGKTMVAMRLARHCGLDYAVMSGGDVAPLGSNAVTELHKLFDWANTTGR------GLLLFIDEGDAFLGSRARVGLSEDQRNALNALLYRTGTPTSKFMLVVATNRPGDLDAAVTDRIDEAMWFGLPDLELREKLLRQYFGEYL-----------VRAGEKAG-TGLVGAFKKRAARIDVAADIDDAYFADLARRTEGFSGRGISKLMLSVQ 409
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A1Y1I760_KLENI (AAA domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I760_KLENI) HSP 1 Score: 151 bits (382), Expect = 1.430e-39 Identity = 93/244 (38.11%), Postives = 146/244 (59.84%), Query Frame = 1
Query: 22 VILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYL---NHDVPAAGAITIRDGHTSGLVR-LSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQ 741
VIL L R+ SLAS+ + AP N++ +G PG+GK++ A+QLA+ GL+ A++ GGDVGPLG A +++ + W GK G+ L ++EA+A L +R VSMSEN RSAL A+L TG+ ++++ ++RP+D+D AV+DRVDE + P PG ER++L R Y +Y+ D ++ +R G VR ++++ EA+S K+EGF GR++A+ ++Q
Sbjct: 180 VILHPALLSRVRSLASATANTKKHGAPFRNMVFYGPPGTGKTMAAKQLARDSGLDYALMTGGDVGPLGPDAVTKIHQLFDWA------GKSRKGLLLFIDEADAFLKERNAVSMSENLRSALNALLYRTGDQSRDIVLVVATNRPEDLDRAVVDRVDEALEFPLPGEQEREKLIRLYLDKYVMRAGEDSRSSWRKLLRGGSDKIEVRGITDDLLQEAAS-------KTEGFSGRELAKLMVSMQ 410
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A0R0LLE1_SOYBN (AAA domain-containing protein n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0LLE1_SOYBN) HSP 1 Score: 149 bits (377), Expect = 1.510e-39 Identity = 92/247 (37.25%), Postives = 145/247 (58.70%), Query Frame = 1
Query: 13 LKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAA--GAITIRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQVS 747
L VIL L++R+ LA + + + +AP N+L +G+PG+GK++VAR++A+ GL+ A++ GGDV PLGA A +++ I W ++ + G+ L ++EA+A L +R MSE RSAL A+L TG+ +++L ++RP D+D AV DR+DEVI P PG ER +L + Y +YL D + G + + LSE+ EA A K+EGF GR++A+ ++VQ +
Sbjct: 101 LGNVILHPSLQRRIEHLARATSNTKSHQAPFRNMLFYGSPGTGKTMVAREIARRSGLDYAMMTGGDVAPLGAQAVTKIHDIFDWSKKSRK------GLLLFIDEADAFLCERNSSHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLLKLYLNKYLCDDNNGSKGGFFLKKQPQKISIKDLSEDVFREA-------ATKTEGFSGREIAKLMASVQAA 334 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64879.14077.1 >prot_H-elongata_contig64879.14077.1 ID=prot_H-elongata_contig64879.14077.1|Name=mRNA_H-elongata_contig64879.14077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp LPRALKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLback to top mRNA from alignment at H-elongata_contig64879:163..1879+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64879.14077.1 ID=mRNA_H-elongata_contig64879.14077.1|Name=mRNA_H-elongata_contig64879.14077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1717bp|location=Sequence derived from alignment at H-elongata_contig64879:163..1879+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64879:163..1879+ >mRNA_H-elongata_contig64879.14077.1 ID=mRNA_H-elongata_contig64879.14077.1|Name=mRNA_H-elongata_contig64879.14077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig64879:163..1879+ (Himanthalia elongata Himel1 dioecious)back to top |