mRNA_H-elongata_contig64879.14077.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64879.14077.1
Unique NamemRNA_H-elongata_contig64879.14077.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: D7FS39_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS39_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 8.040e-66
Identity = 142/307 (46.25%), Postives = 177/307 (57.65%), Query Frame = 1
Query:   16 KGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWI--TRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPA-------------------------------AGAITI------------------------------RDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQVS 747
            + V+LP      L   +S   +S  R APLP+VL+HGAPGSGKS++AR+L   CGLN  +VAGGDVG LG  ASSELSG++RW               VA++M+EAEAALGDR K  MSENARSAL A+LL TGE + GF+M+LT+S PQD+DEA+LDRVDEV+ +PTPG  ER  L RQYF+ YL+HD PA                               A A T                               R G   G+VRLS+ FR++A+ L+  LAV+SEGF+GRDM  FFSAVQ +
Sbjct:  536 RAVLLP------LLGKSSHCSSSYRRGAPLPHVLIHGAPGSGKSVLARRLVGMCGLNTVVVAGGDVGSLGRNASSELSGLMRWAGGXXXXXXXXXXXXVAVVMDEAEAALGDRRKKGMSENARSALNAVLLSTGELRAGFLMVLTTSCPQDLDEAILDRVDEVVHLPTPGFPERARLIRQYFSSYLHHDPPADFLRATAVLGSAEARAEFVESRREGGRPTAMAKAATXXXXXXXXXXXXXQPEAHLPADTTEDEKENPRTGGGGGVVRLSDGFRAKAAGLMAMLAVRSEGFYGRDMEHFFSAVQAA 836          
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A6H5L1Y3_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Y3_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.120e-59
Identity = 114/197 (57.87%), Postives = 139/197 (70.56%), Query Frame = 1
Query:    7 RALKGVILPSDLEQRLC---SLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWI--TRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVP 582
            R +   + PS L    C   + A +  +S  R APLPNVL+HGAPGSGKS++AR+L   CGLN  +VAGGDVG LG  ASSELSG++RW               VA++M+EAEAALGDR K  MSENARSAL A+LL TGE + GF+M+LT+SRPQD+DEA+LDRVDEV+ +PTPGL ER  L RQYF  YL+HD P
Sbjct:   61 RDIPHTLAPSRLRALWCFYTTHAVTASSSYRRGAPLPNVLIHGAPGSGKSVLARRLVGMCGLNTVVVAGGDVGSLGRNASSELSGLMRWAGGXXXXXXXXXXXXVAVVMDEAEAALGDRRKKGMSENARSALNAVLLSTGELRAGFLMVLTTSRPQDLDEAILDRVDEVVHLPTPGLPERARLIRQYFCSYLHHDPP 257          
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A8J2T0E4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0E4_9STRA)

HSP 1 Score: 179 bits (453), Expect = 2.510e-48
Identity = 105/248 (42.34%), Postives = 152/248 (61.29%), Query Frame = 1
Query:   19 GVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAITIRDGHTSGLVRLSENFRS-------EASSLVETLAVKSEGFHGRDMARFFSAVQ 741
            G+ILP DL +RL  LA SIR +   RAPL ++LL G PG+GK++VAR+L++  GL+ AI++GGDVGPLGA AS+E+  IL W  R+ +      G+ L ++EAEAAL DRG+  +SE A SAL A L HT +    FM++L ++RP D+D AVLDRVDE + +P P    R++L   YFA   +   P+     + D       R+ + FR+       +    +  LA K+EG+ GR+ ++   +VQ
Sbjct:  422 GIILPEDLGKRLDQLAKSIRGARKLRAPLRHLLLFGPPGTGKTMVARRLSQISGLDWAIMSGGDVGPLGAAASTEIHAILNWARRSPK------GLLLFVDEAEAALCDRGRPDLSEEAISALNAFLFHTSDPSYTFMLVLATNRPGDLDAAVLDRVDEAVEIPLPDEGAREKLLHLYFAMAFDRPAPSTRLGRLLD-------RILKRFRAPDVCIALDRKEAIRALAKKTEGYSGRECSKLMLSVQ 656          
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A7S3JSF0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF0_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.340e-42
Identity = 97/243 (39.92%), Postives = 154/243 (63.37%), Query Frame = 1
Query:   19 GVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAITIRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQVS 747
            GVIL + +  RL +LA S+R +    APL +++L+G PG+GK+LVAR+LA A GL+ A+ +GGD+GPLG +A++EL  +L W  R+ +      G+ L ++EAEAAL DRG+ ++SE+A SAL A L HT E     +++L ++RP DID AVLDR+DEVI++P P    R +L + YF +    D  A    ++   + +    ++ +F  + S+ +  L   +EGF GR++A+   ++Q +
Sbjct:  389 GVILQNSIGPRLEALAHSLRGARRLHAPLRHIMLYGPPGTGKTLVARKLAAASGLDWAVASGGDIGPLGPSATTELHKLLNWARRSPR------GLLLFLDEAEAALADRGRPNLSEDAVSALNAFLTHTSEPSYSVVLVLATNRPADIDAAVLDRIDEVIQLPLPDSHCRAQLLQLYFDQCFITD-DARMRYSLFTSNRNKRPCIASDF--DVSAHLNDLLPYTEGFSGREIAKLMLSIQAA 622          
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A7S3NKV4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKV4_9STRA)

HSP 1 Score: 162 bits (411), Expect = 3.870e-42
Identity = 94/243 (38.68%), Postives = 142/243 (58.44%), Query Frame = 1
Query:   13 LKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAITIRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQ 741
            L  VIL   +  RL  LASS R +    AP  ++LLHG PG+GK+L A++LA+A  L+ A+++GGDVGPLG    + L  + RW   + +RG     V + ++EAEA L  R K  ++E+ R+AL A L HTG     F+++L ++RP+D+DEAVLDR+D+ + +  PGL+ R  LA  YF +YL    P +    I      G    +     +A + +ET+A  ++GF  R++ +   AVQ
Sbjct:  482 LDDVILTDQVRSRLLQLASSTRNAKRNDAPFRHILLHGPPGTGKTLTAKKLAQASSLDYALMSGGDVGPLGVHGVTALHSLFRW-AHSSERG-----VLIFIDEAEAFLASRDKARLTEHMRNALNAFLYHTGTPGNSFVIVLATNRPEDLDEAVLDRIDDAVEIGLPGLSHRLLLAEMYFNKYLRRSYPKSFFSRIISSCRLGTKYKTITISDDAVAQLETIANLTDGFSAREIEKLMVAVQ 718          
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: F0Y2W0_AURAN (AAA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2W0_AURAN)

HSP 1 Score: 157 bits (397), Expect = 4.800e-41
Identity = 95/250 (38.00%), Postives = 145/250 (58.00%), Query Frame = 1
Query:   13 LKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAG-------AITIRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQ 741
            L GV+LP DL  R+  LA + R +   RAP  ++LLHG PG+GK+LVA++LAKA GL  A+++GGDVGPLGA   + L  + RW   +        GV + ++EAEA L  R +  ++E+ R+AL A L  TG     F+++L ++R +D+DEAVLDRVDE +    P L  R+ LA  Y+ARY+   V A         A+T      +    +++       ++++ +A  ++ F GR++ + F AVQ
Sbjct:  266 LDGVVLPGDLRTRVLQLAVATRNAKRNRAPFRHMLLHGPPGTGKTLVAKRLAKASGLEYALMSGGDVGPLGADGVTALHTLFRWARTSD------TGVLIFIDEAEAFLASRSRSKLTEHMRNALNAFLYQTGSPTKSFILVLATNRAEDLDEAVLDRVDETLYFGLPALPARRSLAALYYARYVTSLVYAPSRFRALLRALTFAPAALAVAPDVTD-------AVLDDVAKLTDDFSGREIEKLFVAVQ 502          
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A812LTK1_9DINO (Atad3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LTK1_9DINO)

HSP 1 Score: 154 bits (388), Expect = 3.850e-40
Identity = 96/246 (39.02%), Postives = 148/246 (60.16%), Query Frame = 1
Query:   10 ALKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAIT--IRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQ 741
            +L  VIL  D+  R+  LA + R + A  AP  +++ +G PG+GK+++A++LA++ G++ AI++GGDVGPLG  A +EL  +  +  R+ QRG     + L ++EA+A L  R K +MSE  R+AL A+L  TGEA   FMM+L ++RP D+D AVLDR DE +    P    RK L RQYF +Y+  D  ++G+    +     S  + L   F  E    ++ +A ++EGF GR +A+   +VQ
Sbjct:  210 SLTDVILRKDIADRVQRLAVATRNTRANGAPYRHMMFYGPPGTGKTMLAKRLARSSGMDYAIMSGGDVGPLGKEAVTELHRLFDYAERS-QRG-----MLLFIDEADAFLASRSKAAMSEEQRNALNALLFRTGEASDRFMMVLATNRPGDLDSAVLDRTDESLLFDLPDAEARKALVRQYFKKYIT-DAGSSGSGVGGLMGFKRSAKIILDSGFSDE---WLDRVAERTEGFSGRGIAKLMLSVQ 445          
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A7S1CAP0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAP0_9STRA)

HSP 1 Score: 153 bits (386), Expect = 4.600e-40
Identity = 93/256 (36.33%), Postives = 145/256 (56.64%), Query Frame = 1
Query:    4 PRALKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAITIRDGHTSGLVRLSENFRSEASSL----------VETLAVKSEGFHGRDMARFFSAVQ 741
            P   + V+LP +L +++  LA S R +    APL +VL +G PG+GK++VA +LA+ CGL+ A+++GGDV PLG+ A +EL  +  W    G+      G+ L ++E +A LG R +V +SE+ R+AL A+L  TG     FM+++ ++RP D+D AV DR+DE +    P L  R++L RQYF  YL           +R G  +G   L   F+  A+ +             LA ++EGF GR +++   +VQ
Sbjct:  172 PTGFEDVVLPEELAEQVHRLALSTRNAKLNHAPLRHVLFYGPPGTGKTMVAMRLARHCGLDYAVMSGGDVAPLGSNAVTELHKLFDWANTTGR------GLLLFIDEGDAFLGSRARVGLSEDQRNALNALLYRTGTPTSKFMLVVATNRPGDLDAAVTDRIDEAMWFGLPDLELREKLLRQYFGEYL-----------VRAGEKAG-TGLVGAFKKRAARIDVAADIDDAYFADLARRTEGFSGRGISKLMLSVQ 409          
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A1Y1I760_KLENI (AAA domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I760_KLENI)

HSP 1 Score: 151 bits (382), Expect = 1.430e-39
Identity = 93/244 (38.11%), Postives = 146/244 (59.84%), Query Frame = 1
Query:   22 VILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYL---NHDVPAAGAITIRDGHTSGLVR-LSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQ 741
            VIL   L  R+ SLAS+   +    AP  N++ +G PG+GK++ A+QLA+  GL+ A++ GGDVGPLG  A +++  +  W       GK   G+ L ++EA+A L +R  VSMSEN RSAL A+L  TG+     ++++ ++RP+D+D AV+DRVDE +  P PG  ER++L R Y  +Y+     D  ++    +R G     VR ++++   EA+S       K+EGF GR++A+   ++Q
Sbjct:  180 VILHPALLSRVRSLASATANTKKHGAPFRNMVFYGPPGTGKTMAAKQLARDSGLDYALMTGGDVGPLGPDAVTKIHQLFDWA------GKSRKGLLLFIDEADAFLKERNAVSMSENLRSALNALLYRTGDQSRDIVLVVATNRPEDLDRAVVDRVDEALEFPLPGEQEREKLIRLYLDKYVMRAGEDSRSSWRKLLRGGSDKIEVRGITDDLLQEAAS-------KTEGFSGRELAKLMVSMQ 410          
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Match: A0A0R0LLE1_SOYBN (AAA domain-containing protein n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0LLE1_SOYBN)

HSP 1 Score: 149 bits (377), Expect = 1.510e-39
Identity = 92/247 (37.25%), Postives = 145/247 (58.70%), Query Frame = 1
Query:   13 LKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSLVARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGAGVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSSRPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAA--GAITIRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQVS 747
            L  VIL   L++R+  LA +   + + +AP  N+L +G+PG+GK++VAR++A+  GL+ A++ GGDV PLGA A +++  I  W  ++ +      G+ L ++EA+A L +R    MSE  RSAL A+L  TG+     +++L ++RP D+D AV DR+DEVI  P PG  ER +L + Y  +YL  D   +  G    +      +  LSE+   EA       A K+EGF GR++A+  ++VQ +
Sbjct:  101 LGNVILHPSLQRRIEHLARATSNTKSHQAPFRNMLFYGSPGTGKTMVAREIARRSGLDYAMMTGGDVAPLGAQAVTKIHDIFDWSKKSRK------GLLLFIDEADAFLCERNSSHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLLKLYLNKYLCDDNNGSKGGFFLKKQPQKISIKDLSEDVFREA-------ATKTEGFSGREIAKLMASVQAA 334          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64879.14077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS39_ECTSI8.040e-6646.25AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L1Y3_9PHAE1.120e-5957.87AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8J2T0E4_9STRA2.510e-4842.34Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JSF0_9STRA1.340e-4239.92Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3NKV4_9STRA3.870e-4238.68Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0Y2W0_AURAN4.800e-4138.00AAA domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A812LTK1_9DINO3.850e-4039.02Atad3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S1CAP0_9STRA4.600e-4036.33Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1Y1I760_KLENI1.430e-3938.11AAA domain-containing protein n=1 Tax=Klebsormidiu... [more]
A0A0R0LLE1_SOYBN1.510e-3937.25AAA domain-containing protein n=1 Tax=Glycine max ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64879contigH-elongata_contig64879:163..1879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue1.1e-58
Seed eggNOG ortholog2880.D7FS39
KEGG koko:K17681
EggNOG free text desc.mitochondrion organization
EggNOG OGsCOG1223@1,KOG0742@2759
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-16_004460.2
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Exons4
Model size747
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64879.14077.1prot_H-elongata_contig64879.14077.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64879 163..1879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.5886455-CDS-H-elongata_contig64879:162..2391622931034.5886455-CDS-H-elongata_contig64879:162..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64879 163..239 +
1691679670.7238014-CDS-H-elongata_contig64879:162..2391691679670.7238014-CDS-H-elongata_contig64879:162..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64879 163..239 +
1622931034.603293-CDS-H-elongata_contig64879:483..7561622931034.603293-CDS-H-elongata_contig64879:483..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64879 484..756 +
1691679670.7360668-CDS-H-elongata_contig64879:483..7561691679670.7360668-CDS-H-elongata_contig64879:483..756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64879 484..756 +
1622931034.6167321-CDS-H-elongata_contig64879:1127..12361622931034.6167321-CDS-H-elongata_contig64879:1127..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64879 1128..1236 +
1691679670.7485266-CDS-H-elongata_contig64879:1127..12361691679670.7485266-CDS-H-elongata_contig64879:1127..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64879 1128..1236 +
1622931034.633799-CDS-H-elongata_contig64879:1591..18791622931034.633799-CDS-H-elongata_contig64879:1591..1879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64879 1592..1879 +
1691679670.759462-CDS-H-elongata_contig64879:1591..18791691679670.759462-CDS-H-elongata_contig64879:1591..1879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64879 1592..1879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64879.14077.1

>prot_H-elongata_contig64879.14077.1 ID=prot_H-elongata_contig64879.14077.1|Name=mRNA_H-elongata_contig64879.14077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
LPRALKGVILPSDLEQRLCSLASSIRASCARRAPLPNVLLHGAPGSGKSL
VARQLAKACGLNIAIVAGGDVGPLGATASSELSGILRWITRAGQRGKRGA
GVALIMEEAEAALGDRGKVSMSENARSALTAILLHTGEAQPGFMMILTSS
RPQDIDEAVLDRVDEVIRMPTPGLAERKELARQYFARYLNHDVPAAGAIT
IRDGHTSGLVRLSENFRSEASSLVETLAVKSEGFHGRDMARFFSAVQVS
back to top

mRNA from alignment at H-elongata_contig64879:163..1879+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64879.14077.1 ID=mRNA_H-elongata_contig64879.14077.1|Name=mRNA_H-elongata_contig64879.14077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1717bp|location=Sequence derived from alignment at H-elongata_contig64879:163..1879+ (Himanthalia elongata Himel1 dioecious)
CTTCCGAGGGCGCTGAAAGGGGTTATTCTGCCTTCCGACCTTGAACAACG GCTGTGCTCCTTAGCCTCGTCCATCCGGTGCGTGGCTTTAAATAGAAAAT ACTGCGCTTTGCGATAATGTTGAGCTAATAAACACGTTTTACCTAGTGGT GGCGAGGGTTGGAGGGGGCGCACAGGCCCTTCCAAAGTAAAATCCAGTCA GATGAGCTTCCAATAAGCTGGGTACTGTAGTGAAACATTGGGTCATGTTG AATAAAGATAAACGACCACGAAACTACTGCCTTTTTCTATCTTTTCCTTT TCCCCGATTCTCTTCGAACAGCGCCTCTTGTGCTCGAAGAGCCCCGTTAC CGAACGTGCTACTCCACGGCGCACCGGGGTCAGGCAAAAGCCTTGTCGCG AGGCAACTTGCCAAGGCGTGCGGGTTGAATATAGCTATCGTTGCCGGTGG AGACGTGGGTCCTTTAGGAGCCACCGCCTCTTCGGAGCTCAGCGGTATTC TTCGGTGGATCACCAGGGCGGGTCAGCGGGGCAAGAGGGGAGCGGGGGTA GCATTGATTATGGAGGAGGCGGAGGCTGCCTTGGGTGACCGCGGGTAATA TGCGGGGTGCCTTCTATAAGCCCAGATTACGTGGCGTACACACGTCGAGA TATTTTGTCGTGACAAGTGCACCGCTCGTGAAATGTACTGGCGATTCACA TCGAGTCGGGGATATAATAATAATTTGACTTGCATATCTTGGCACTTCGG GGTAGATGCAACAACTATCCCGAGCAGATTATCTTTTTAGCTTGAGGGGG ATTGCTCTAGAACGATATATCACCATCGTGGTCGCGCACTGTTTGTTATA ATACCCACTGCGCTTGTTTTCGGAGAGAAGGATAGTCGCGTGACAAGTAC GAGAGAGCCATCGTATCAATACAAGATGCGCCATTCCCACGGCACCGCCT TTCGTCTCACAACAGGAAGGTGAGCATGAGCGAAAATGCAAGGAGCGCCC TAACCGCCATCTTACTTCACACGGGAGAGGCCCAACCCGGCTTTATGATG ATCCTAACGTCGAGTCGCCCGCAGGTACGGGCGCTGGATCGGCGTGGGTT AGGCATTTCATCGTCGAGTTAAACACGAAATGTTCCCAACTTATCCCGGC AGGCACTTCCAACTGCCAGTAATAGAGCTTAGAAACCTTTGCCATACGCG TGTTGCGTGTTTGGTGCAGTATATAAACACTTATACACTCAATGAACGCC TACCGATAATCGCTCAAGCGGTGATCCATCTATCATGCATATATTTGTAT ATACTTCATATGTGTTTCGCATTATATTACAATACTTTACACTGCGGTCA TACTTGTCATACCGATTGAGATCGACGTTATGCTGCCCGTTCCTGTACCT TGCTCCTAACGTATTATACGTGTCACCAGGACATCGACGAGGCTGTTCTG GACCGTGTGGACGAAGTAATTCGCATGCCCACACCGGGGCTCGCCGAGCG CAAGGAGCTTGCTCGACAGTACTTCGCGAGGTACCTTAACCATGACGTGC CTGCGGCGGGTGCCATCACGATACGCGATGGCCATACCAGCGGCTTGGTT CGTCTGAGTGAAAATTTCCGTTCGGAGGCATCAAGTTTGGTGGAGACTCT TGCGGTCAAGAGCGAGGGGTTCCACGGTAGGGACATGGCAAGATTTTTCT CCGCGGTGCAGGTAAGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig64879:163..1879+

>mRNA_H-elongata_contig64879.14077.1 ID=mRNA_H-elongata_contig64879.14077.1|Name=mRNA_H-elongata_contig64879.14077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig64879:163..1879+ (Himanthalia elongata Himel1 dioecious)
CTTCCGAGGGCGCTGAAAGGGGTTATTCTGCCTTCCGACCTTGAACAACG
GCTGTGCTCCTTAGCCTCGTCCATCCGCTTCCGAGGGCGCTGAAAGGGGT
TATTCTGCCTTCCGACCTTGAACAACGGCTGTGCTCCTTAGCCTCGTCCA
TCCGCGCCTCTTGTGCTCGAAGAGCCCCGTTACCGAACGTGCTACTCCAC
GGCGCACCGGGGTCAGGCAAAAGCCTTGTCGCGAGGCAACTTGCCAAGGC
GTGCGGGTTGAATATAGCTATCGTTGCCGGTGGAGACGTGGGTCCTTTAG
GAGCCACCGCCTCTTCGGAGCTCAGCGGTATTCTTCGGTGGATCACCAGG
GCGGGTCAGCGGGGCAAGAGGGGAGCGGGGGTAGCATTGATTATGGAGGA
GGCGGAGGCTGCCTTGGGTGACCGCGGCGCCTCTTGTGCTCGAAGAGCCC
CGTTACCGAACGTGCTACTCCACGGCGCACCGGGGTCAGGCAAAAGCCTT
GTCGCGAGGCAACTTGCCAAGGCGTGCGGGTTGAATATAGCTATCGTTGC
CGGTGGAGACGTGGGTCCTTTAGGAGCCACCGCCTCTTCGGAGCTCAGCG
GTATTCTTCGGTGGATCACCAGGGCGGGTCAGCGGGGCAAGAGGGGAGCG
GGGGTAGCATTGATTATGGAGGAGGCGGAGGCTGCCTTGGGTGACCGCGG
GAAGGTGAGCATGAGCGAAAATGCAAGGAGCGCCCTAACCGCCATCTTAC
TTCACACGGGAGAGGCCCAACCCGGCTTTATGATGATCCTAACGTCGAGT
CGCCCGCAGGAAGGTGAGCATGAGCGAAAATGCAAGGAGCGCCCTAACCG
CCATCTTACTTCACACGGGAGAGGCCCAACCCGGCTTTATGATGATCCTA
ACGTCGAGTCGCCCGCAGGACATCGACGAGGCTGTTCTGGACCGTGTGGA
CGAAGTAATTCGCATGCCCACACCGGGGCTCGCCGAGCGCAAGGAGCTTG
CTCGACAGTACTTCGCGAGGTACCTTAACCATGACGTGCCTGCGGCGGGT
GCCATCACGATACGCGATGGCCATACCAGCGGCTTGGTTCGTCTGAGTGA
AAATTTCCGTTCGGAGGCATCAAGTTTGGTGGAGACTCTTGCGGTCAAGA
GCGAGGGGTTCCACGGTAGGGACATGGCAAGATTTTTCTCCGCGGTGCAG
GTAAGTGACATCGACGAGGCTGTTCTGGACCGTGTGGACGAAGTAATTCG
CATGCCCACACCGGGGCTCGCCGAGCGCAAGGAGCTTGCTCGACAGTACT
TCGCGAGGTACCTTAACCATGACGTGCCTGCGGCGGGTGCCATCACGATA
CGCGATGGCCATACCAGCGGCTTGGTTCGTCTGAGTGAAAATTTCCGTTC
GGAGGCATCAAGTTTGGTGGAGACTCTTGCGGTCAAGAGCGAGGGGTTCC
ACGGTAGGGACATGGCAAGATTTTTCTCCGCGGTGCAGGTAAGT
back to top