mRNA_H-elongata_contig64874.14076.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64874.14076.1
Unique NamemRNA_H-elongata_contig64874.14076.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64874.14076.1 vs. uniprot
Match: D7FS81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS81_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 3.110e-66
Identity = 169/405 (41.73%), Postives = 203/405 (50.12%), Query Frame = 1 
Query:   34 KRVFAHYVLGRLIFLFFLCHPGTLATCDGQAYLLNRYPNRDLVTTEGQLQDHRRHLTPRDPNDFAMKTGVPEDLIKGDA---DCWTPDWALSLEDRFQRKVEAWLRRPSRAKQQ-----------------AETA-------------AAKFLPPGLAFVPTVDVRGAMD------AQAACVKVRQKDPWAS-LAELGVRPRAAPRPSARTRRSGGCGRCRYLR-GSPGSTHQMILGLGKRRFPSRHSIFSAPDSTSAGSTRGG-------------EDEDFASAKDVDARTVEKLEATSRSL--EDPKPRRDASEGVLSSVLGGAADAYDSAMSFVGWALVTLPLGKRCLS-AYDNLITVPASTIDHGSTDVSGDGVDMSGGGGGYNLVGISNIDPFEASGRRG 1077
            +RVF HYVLG+++ LFFLCHPGTLATCDGQAYL NRY NRDLV TE +L+DHRRH   RD ++FAM+ GVPE++++  A   D +TPDWA +LE RF   V AWLR+      Q                 A TA             A +    G+AFVPT   RG +       + +  +  RQ+  W S LAE+G  PR       R     GC R R  R GS G+   ++     R FP R  IF                           +DE    A      + E LE   R L          +   VLS+ LGGAADAYDSA+ FVG ALVT PLGKR LS A D   TV  STI        G   DM+ G   Y+LVG SNIDPFEASGR G
Sbjct:    7 ERVFIHYVLGKMLMLFFLCHPGTLATCDGQAYLRNRYANRDLVKTESELEDHRRHYKRRDVSEFAMRVGVPEEILQSKAGVDDNYTPDWAPTLEQRFHSTVVAWLRKGGSTADQDKPATTTGATHTNAGSTANTASXXXXXXXXXXMAAVRVATRGMAFVPTPHTRGRVTGVHRRASTSGALTARQR--WVSPLAEVGSNPR-------RCSECSGCRRLRSARRGSAGNPQMLLSRFRGRGFPLRRGIFGGASEADGXXXXXXXXXXXXXXXEDCVQDEIRDQAAATTYNSAETLEGPERPLTGNGDSGGGGSRSSVLSTFLGGAADAYDSALDFVGCALVTSPLGKRYLSGASDGYNTV--STIRR----TGGGPADMNSGSA-YDLVGFSNIDPFEASGRGG 395
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BLAST of mRNA_H-elongata_contig64874.14076.1 vs. uniprot
Match: A0A836CPJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPJ6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.130e-16
Identity = 107/368 (29.08%), Postives = 145/368 (39.40%), Query Frame = 1 
Query:   34 KRVFAHYVLGRLIFL---FFLCHPGTLATCDGQAYLLNRYPNRDLVTTEGQLQ---DHRRHLTPRDPNDFAMKTGVPEDLIKGDADCWTPDWALSLEDRFQRKVEAWLRRPSRAKQQAETAAAKFLPPGLAFVPTVDVRGAMD---AQAACVKVRQKDPWASLAELGVRPRAAPRPSARTRRSGGCGRCRYLRGSPGSTHQMILGLGKRRFPSRHSIFSAPDSTSAGSTRGGEDEDFASAKDVDARTVEKLEATSRSLEDPKPRRDASEGVLSSVLGGAADAYDSAMSFVGWALVTLPLGKRCLSAYDNL--------------------ITVPASTIDHGSTDVSGDGVDMSGGGGGYNLVGISNID 1050
            +R+FAHYVLGRL FL   FFLCHPGT+AT +G+ YL +RYPNR+L     + +   D RR L          K  VP          W  + A     R      +     S+AK Q E A+  F+    A  PT  +R A     AQ      R    W +     +  + +PRPS     + G         +PGS  Q                    D+T   S+R G            A +V  L A +        R   +  +L  + GGA DA+D+A S +G ALVT PL K  L+  D                      +T+PAS + H  T  S            Y+LVG  ++D
Sbjct:   18 RRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASEARLNGDTRRAL---------RKCAVP----------WNIEQAARAASRAG-AASSSSPAASKAKHQIEIASLAFV---AAPRPTGFMRRARSFSHAQPFAQSSRSHRAWPANGPTMLL-KWSPRPSDSFSATNG---------APGSQTQSTAPF---------------DTTGDSSSRRGM---------TGAMSVPALSAITAGNAGGDDRVSRARRLLGGIAGGAQDAFDTAASAIGCALVTHPLAKHLLTDDDGAGAYGGFQRSSRRRGRGTPGNLTLPASAVAHRRTPASTRVTS-------YDLVGFMDVD 321
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BLAST of mRNA_H-elongata_contig64874.14076.1 vs. uniprot
Match: A0A836CID3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.240e-6
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   22 RQDG--KRVFAHYVLGRLIFL---FFLCHPGTLATCDGQAYLLNRYPNRDLVTT 168
            RQ G  KR+FAHYVLG+L FL   FFLCHPG+ AT   + YL  RYPN  L+ T
Sbjct:    2 RQHGGFKRIFAHYVLGKLGFLGILFFLCHPGSQATFCSKDYLSQRYPNLKLLAT 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64874.14076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS81_ECTSI3.110e-6641.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPJ6_9STRA6.130e-1629.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CID3_9STRA1.240e-659.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64874contigH-elongata_contig64874:2..3006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000890.1
Exons3
Model size1201
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64874.14076.1prot_H-elongata_contig64874.14076.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64874 2034..2915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.4612424-UTR-H-elongata_contig64874:1..281622931034.4612424-UTR-H-elongata_contig64874:1..28Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64874 2..28 +
1691679670.6575954-UTR-H-elongata_contig64874:1..281691679670.6575954-UTR-H-elongata_contig64874:1..28Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64874 2..28 +
1622931034.4929183-UTR-H-elongata_contig64874:879..10321622931034.4929183-UTR-H-elongata_contig64874:879..1032Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64874 880..1032 +
1691679670.6730747-UTR-H-elongata_contig64874:879..10321691679670.6730747-UTR-H-elongata_contig64874:879..1032Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64874 880..1032 +
1622931034.5141232-UTR-H-elongata_contig64874:1985..20331622931034.5141232-UTR-H-elongata_contig64874:1985..2033Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64874 1986..2033 +
1691679670.6866562-UTR-H-elongata_contig64874:1985..20331691679670.6866562-UTR-H-elongata_contig64874:1985..2033Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64874 1986..2033 +
1622931034.549793-UTR-H-elongata_contig64874:2915..30061622931034.549793-UTR-H-elongata_contig64874:2915..3006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64874 2916..3006 +
1691679670.7129498-UTR-H-elongata_contig64874:2915..30061691679670.7129498-UTR-H-elongata_contig64874:2915..3006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64874 2916..3006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.5324419-CDS-H-elongata_contig64874:2033..29151622931034.5324419-CDS-H-elongata_contig64874:2033..2915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64874 2034..2915 +
1691679670.6980333-CDS-H-elongata_contig64874:2033..29151691679670.6980333-CDS-H-elongata_contig64874:2033..2915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64874 2034..2915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64874.14076.1

>prot_H-elongata_contig64874.14076.1 ID=prot_H-elongata_contig64874.14076.1|Name=mRNA_H-elongata_contig64874.14076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
MKTGVPEDLIKGDADCWTPDWALSLEDRFQRKVEAWLRRPSRAKQQAETA
AAKFLPPGLAFVPTVDVRGAMDAQAACVKVRQKDPWASLAELGVRPRAAP
RPSARTRRSGGCGRCRYLRGSPGSTHQMILGLGKRRFPSRHSIFSAPDST
SAGSTRGGEDEDFASAKDVDARTVEKLEATSRSLEDPKPRRDASEGVLSS
VLGGAADAYDSAMSFVGWALVTLPLGKRCLSAYDNLITVPASTIDHGSTD
VSGDGVDMSGGGGGYNLVGISNIDPFEASGRRGRRTSSRLLVH*
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mRNA from alignment at H-elongata_contig64874:2..3006+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64874.14076.1 ID=mRNA_H-elongata_contig64874.14076.1|Name=mRNA_H-elongata_contig64874.14076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3005bp|location=Sequence derived from alignment at H-elongata_contig64874:2..3006+ (Himanthalia elongata Himel1 dioecious)
GCAGTCCAGGGGACCAACTATCGTCAGGTTCGAATGTGTATATAACTACA
TTTGAGCACAAAATCATCACACACGTGACATTTTCTTTGAAATAATAGCA
CTGTATACAGTACCGGTATCAGTTTTGACCTTGACCGCATATCCACCTTC
CTTCGACATCATGGGAGTTGAAGAAGCTATCGAGTCAGTAGGTACAGCTT
TCCTTTTTAAAAACGCGTGTGAACTCATTCAGCTACGGCATATGCTTGTG
AAAGAAAAGGATTGGATTCCGCCTCGTAAGCCTGCCTTGCGCATTATTCT
AGGACAGTTGTTACATGTCGTATGTACCAATAGTGGGTGTGGGAAAAGAG
GGGCACACAATAATTGGTTCATGTAGTTACCTGAATAGGCTGCACCTGTT
ACTCGAGCTACCTTGAGGACTGCTGGCTCAGTGCCGGCGGATTCTCGGTA
GTAAACGCCATCGGTACTAGCAATTATTGCGGACCTATAATGATGAAATC
AGGATTGGCCCGATCGCGGTAGAGCTGGACGCCGTCGCGGAAAACGAGAG
GATCCCGGGAGTAAGCACCAGATTCAGTCTGGGCTGGGAAAATGAGCAGG
CTGACGCGGGACGGAACGGCCGAACCCGTCTAGCGAGACCAAATTCTCAG
GCGCAAGCGGGGACGGGGGAAAAACAATTTTCCCTGTTCAACTGGCCACA
AGCAGGAGGCAACCAAATCCGGTCGATCCTTACTTCTGCTAAAAGTATAA
TGACCCCGCATATCCAGCAGTATACCCCCTCGCCCCAACCCCCGCATCTC
ATTCCCGCATCTCATTGGCGAGTATCATATTAATGATGTCGCTGTCGCTG
CCGCTGCGCCTCCGACCTCTCTTTGCAGGACGGTAAGCGAGTGTTTGCGC
ACTACGTCCTCGGCAGACTGATATTTCTATTCTTCCTCTGCCACCCCGGA
ACTTTGGCCACCTGCGACGGTCAAGCATACCTTCTCAATCGCTACCCGAA
TCGAGATCTGGTCACCACCGAGGGGCAGCTGGTGAGTGAAGATACCCCCC
CGGCAATAGATCGACGCGTTTACCCAAAGCATTGAAACCACGTGGGGGGT
AACATCTTGGCTTAGTTACAAGGCGTGTGCTGATGCGTTTTTCATCCAGT
TGCGTTACACTGCTGCTGCTGCTGCGAACAATTCAAAAAATGTATCCTAT
GGCCGAAAAAGAGGATAACTAGTATGATATAACCGAAAAGGAGAATAAAA
GGTATATTGTGACCGGAAAAGAGGATAAAGGTACACTATGACTGAAAAGG
AGAATGAAAATGTAAACTATGACCGAAAAAGAGAATGAATGGTATACTAT
GACCGAAAAAAAGAATAACAATACATCGTCGAGGTGCTATGTCCGGCTTT
GGTCACGCAGCCGATTATGCGCATCTTGTGGAGGGAGGGATTAGCGACTT
TTTTATCGCATTTTATCAACATATCTTATTACGTATTCTAGCAGGGACAA
CTGCTCAGCGTGGCAGCAGGAGCCTTAAAGTCATATTTTCGACCCTAGCG
GGCTGGGGTGTGTTCCGTCCCCGGGGTCCCCACCCTAATAGTAAAACATC
CCACCAGTTTGGCTGAAAACGTTTTTCGCAATATGCACCAACAACACCCT
TTTCCCCTTCGTAATCGAGATCTACAATGCTTAAAAGACCAACTCGACTC
TTGCCCCGAGCCCCCCTGAAGGCGTTTTCGGTACTTCGTCCTTTCCTTGA
CCGTTAACTGGCACAAACGGTGGCTCCGCAGGTGAAGAAAGAAATACTGT
ATATGATAACAAACATATATGATAGAATGGGAGGAAGCATTGCATGACCC
CCACACAAGACACAATCATCGCGCCAACAACTGGCCGCAAAATAATAAAA
AATAATACTTCTACTCACCACATTAATCACCCCCTCCCCCTCCCCATCTC
CCCCTCTTCCCCCCTGCCAACAACATTCCTGCAGCAAGACCACAGACGTC
ATCTTACCCCACGCGACCCAAATGACTTCGCCATGAAAACCGGAGTCCCG
GAAGATTTGATCAAAGGGGACGCTGATTGCTGGACGCCGGACTGGGCCCT
CTCCCTCGAGGACCGCTTCCAACGCAAGGTGGAAGCGTGGCTACGTAGAC
CCTCTCGCGCGAAGCAGCAGGCAGAAACCGCCGCAGCGAAATTTTTGCCC
CCGGGCCTCGCCTTCGTTCCGACGGTGGACGTACGCGGAGCGATGGACGC
GCAAGCCGCTTGCGTCAAGGTTCGACAGAAAGATCCGTGGGCATCCCTCG
CTGAACTCGGCGTCAGGCCTCGCGCCGCGCCCCGTCCCTCCGCCCGTACG
AGGCGGAGTGGGGGCTGCGGTCGTTGCCGCTACCTTAGAGGCAGCCCTGG
TAGCACTCATCAGATGATACTCGGCCTTGGAAAACGTCGGTTTCCTTCCC
GGCACAGTATTTTTAGTGCTCCTGATTCCACAAGCGCCGGTAGTACCAGA
GGCGGCGAAGATGAAGACTTCGCCAGCGCGAAAGACGTTGACGCCCGGAC
GGTGGAAAAGCTGGAGGCGACCTCGAGGTCCTTAGAGGACCCCAAGCCGC
GGCGCGATGCTTCCGAAGGGGTGCTGTCGTCAGTCTTGGGCGGTGCGGCT
GACGCGTACGACTCGGCAATGAGCTTCGTCGGATGGGCTCTGGTTACCTT
GCCACTCGGAAAGCGATGTCTGAGCGCGTACGACAACCTCATCACTGTGC
CGGCCTCGACTATCGATCACGGCAGCACGGACGTGAGCGGCGACGGCGTG
GATATGAGCGGCGGTGGTGGAGGTTACAACCTTGTCGGCATCTCTAACAT
CGATCCCTTCGAAGCGAGCGGCCGTCGCGGGAGGAGGACCTCCAGTCGCC
TGCTGGTGCATTGAGCTCAGGGAAGCGTGCGAAGCTTCGTATCCGGTAGA
ATATACTCAACACCCAAGAGTAGCGCACTGGTCAGGGTCAGCGGCGTCGG
AAATG
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Coding sequence (CDS) from alignment at H-elongata_contig64874:2..3006+

>mRNA_H-elongata_contig64874.14076.1 ID=mRNA_H-elongata_contig64874.14076.1|Name=mRNA_H-elongata_contig64874.14076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig64874:2..3006+ (Himanthalia elongata Himel1 dioecious)
ATGAAAACCGGAGTCCCGGAAGATTTGATCAAAGGGGACGCTGATTGCTG
GACGCCGGACTGGGCCCTCTCCCTCGAGGACCGCTTCCAACGCAAGGTGG
AAGCGTGGCTACGTAGACCCTCTCGCGCGAAGCAGCAGGCAGAAACCGCC
GCAGCGAAATTTTTGCCCCCGGGCCTCGCCTTCGTTCCGACGGTGGACGT
ACGCGGAGCGATGGACGCGCAAGCCGCTTGCGTCAAGGTTCGACAGAAAG
ATCCGTGGGCATCCCTCGCTGAACTCGGCGTCAGGCCTCGCGCCGCGCCC
CGTCCCTCCGCCCGTACGAGGCGGAGTGGGGGCTGCGGTCGTTGCCGCTA
CCTTAGAGGCAGCCCTGGTAGCACTCATCAGATGATACTCGGCCTTGGAA
AACGTCGGTTTCCTTCCCGGCACAGTATTTTTAGTGCTCCTGATTCCACA
AGCGCCGGTAGTACCAGAGGCGGCGAAGATGAAGACTTCGCCAGCGCGAA
AGACGTTGACGCCCGGACGGTGGAAAAGCTGGAGGCGACCTCGAGGTCCT
TAGAGGACCCCAAGCCGCGGCGCGATGCTTCCGAAGGGGTGCTGTCGTCA
GTCTTGGGCGGTGCGGCTGACGCGTACGACTCGGCAATGAGCTTCGTCGG
ATGGGCTCTGGTTACCTTGCCACTCGGAAAGCGATGTCTGAGCGCGTACG
ACAACCTCATCACTGTGCCGGCCTCGACTATCGATCACGGCAGCACGGAC
GTGAGCGGCGACGGCGTGGATATGAGCGGCGGTGGTGGAGGTTACAACCT
TGTCGGCATCTCTAACATCGATCCCTTCGAAGCGAGCGGCCGTCGCGGGA
GGAGGACCTCCAGTCGCCTGCTGGTGCATTGAATGAAAACCGGAGTCCCG
GAAGATTTGATCAAAGGGGACGCTGATTGCTGGACGCCGGACTGGGCCCT
CTCCCTCGAGGACCGCTTCCAACGCAAGGTGGAAGCGTGGCTACGTAGAC
CCTCTCGCGCGAAGCAGCAGGCAGAAACCGCCGCAGCGAAATTTTTGCCC
CCGGGCCTCGCCTTCGTTCCGACGGTGGACGTACGCGGAGCGATGGACGC
GCAAGCCGCTTGCGTCAAGGTTCGACAGAAAGATCCGTGGGCATCCCTCG
CTGAACTCGGCGTCAGGCCTCGCGCCGCGCCCCGTCCCTCCGCCCGTACG
AGGCGGAGTGGGGGCTGCGGTCGTTGCCGCTACCTTAGAGGCAGCCCTGG
TAGCACTCATCAGATGATACTCGGCCTTGGAAAACGTCGGTTTCCTTCCC
GGCACAGTATTTTTAGTGCTCCTGATTCCACAAGCGCCGGTAGTACCAGA
GGCGGCGAAGATGAAGACTTCGCCAGCGCGAAAGACGTTGACGCCCGGAC
GGTGGAAAAGCTGGAGGCGACCTCGAGGTCCTTAGAGGACCCCAAGCCGC
GGCGCGATGCTTCCGAAGGGGTGCTGTCGTCAGTCTTGGGCGGTGCGGCT
GACGCGTACGACTCGGCAATGAGCTTCGTCGGATGGGCTCTGGTTACCTT
GCCACTCGGAAAGCGATGTCTGAGCGCGTACGACAACCTCATCACTGTGC
CGGCCTCGACTATCGATCACGGCAGCACGGACGTGAGCGGCGACGGCGTG
GATATGAGCGGCGGTGGTGGAGGTTACAACCTTGTCGGCATCTCTAACAT
CGATCCCTTCGAAGCGAGCGGCCGTCGCGGGAGGAGGACCTCCAGTCGCC
TGCTGGTGCATTGA
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