mRNA_H-elongata_contig64867.14075.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64867.14075.1
Unique NamemRNA_H-elongata_contig64867.14075.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64867.14075.1 vs. uniprot
Match: D8LGK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK2_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 4.260e-14
Identity = 38/54 (70.37%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:  526 SASGSRRSG-GGRKPLEGNLADAIEHCRYALRALERKEVDLAVQRLHDALQQIT 684
            SA+G RRSG GG + +EGN+ADA+EHC++ALRALE+K+VDLAVQ+LH+ALQQ+T
Sbjct:   90 SAAGPRRSGSGGGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLHEALQQLT 143
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BLAST of mRNA_H-elongata_contig64867.14075.1 vs. uniprot
Match: D8LGK1_ECTSI (Vta1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 4.220e-7
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:  544 RSGGGRKPLEGNLADAIEHCRYALRALERKEVDLAVQRLHDALQQIT 684
            RS  G + +EG LADA+EHCR+A+RALE ++ D A Q+L +ALQ++T
Sbjct:   25 RSSIGSRAMEGKLADAMEHCRFAIRALEFRDADSAAQKLREALQKLT 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64867.14075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGK2_ECTSI4.260e-1470.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGK1_ECTSI4.220e-755.32Vta1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64867contigH-elongata_contig64867:226..2797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001720.1
Exons1
Model size2572
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64867.14075.1prot_H-elongata_contig64867.14075.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64867 238..912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.390641-UTR-H-elongata_contig64867:225..2371622931034.390641-UTR-H-elongata_contig64867:225..237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64867 226..237 +
1691679670.6282187-UTR-H-elongata_contig64867:225..2371691679670.6282187-UTR-H-elongata_contig64867:225..237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64867 226..237 +
1622931034.419199-UTR-H-elongata_contig64867:912..27971622931034.419199-UTR-H-elongata_contig64867:912..2797Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64867 913..2797 +
1691679670.6473794-UTR-H-elongata_contig64867:912..27971691679670.6473794-UTR-H-elongata_contig64867:912..2797Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64867 913..2797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.4076922-CDS-H-elongata_contig64867:237..9121622931034.4076922-CDS-H-elongata_contig64867:237..912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64867 238..912 +
1691679670.6378753-CDS-H-elongata_contig64867:237..9121691679670.6378753-CDS-H-elongata_contig64867:237..912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64867 238..912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64867.14075.1

>prot_H-elongata_contig64867.14075.1 ID=prot_H-elongata_contig64867.14075.1|Name=mRNA_H-elongata_contig64867.14075.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp
MPPAEGKTPPTAVGGEGSSVIGQQESSEHGIPTLPGAAEPKEYGSLTIPE
APVDHQPIGSPAPPEDAAASFGGEGAAYFTQTGRVPSSAPSYLPPFFPGD
PSSSTGGGGEFDGMGAPPQQPLYPTEPGHESISGSVTDPALSWYATQTPA
PAPTPAPTFAPAPARPRTPVPSASGSRRSGGGRKPLEGNLADAIEHCRYA
LRALERKEVDLAVQRLHDALQQIT*
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mRNA from alignment at H-elongata_contig64867:226..2797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64867.14075.1 ID=mRNA_H-elongata_contig64867.14075.1|Name=mRNA_H-elongata_contig64867.14075.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2572bp|location=Sequence derived from alignment at H-elongata_contig64867:226..2797+ (Himanthalia elongata Himel1 dioecious)
TTGGCGACGGGAATGCCTCCAGCAGAAGGAAAAACACCCCCAACTGCGGT
TGGCGGCGAAGGCAGCAGCGTGATCGGTCAACAGGAGAGTTCCGAGCACG
GGATACCAACATTGCCCGGGGCGGCAGAGCCGAAGGAATACGGCTCTCTT
ACAATCCCCGAGGCCCCCGTAGATCATCAACCCATTGGTTCCCCAGCACC
GCCGGAAGATGCCGCCGCTAGCTTTGGAGGAGAAGGAGCCGCCTACTTTA
CCCAGACGGGTCGTGTTCCTTCGTCCGCGCCGTCTTACCTGCCCCCTTTC
TTTCCCGGGGACCCTAGTTCTAGCACTGGCGGCGGTGGTGAATTCGATGG
CATGGGGGCGCCTCCGCAACAACCTTTGTACCCTACGGAACCCGGACATG
AGTCTATTTCTGGGTCTGTGACTGACCCCGCCCTGTCATGGTACGCGACA
CAGACTCCCGCCCCGGCACCCACGCCGGCGCCGACGTTCGCACCCGCGCC
GGCGCGGCCGAGGACGCCGGTGCCTTCGGCGTCGGGAAGCAGGCGGTCGG
GTGGTGGGCGTAAACCGCTAGAAGGCAACCTGGCGGACGCGATCGAGCAC
TGCCGATACGCACTTCGGGCGCTGGAGCGCAAGGAAGTGGACCTCGCGGT
GCAGAGGCTACACGACGCGTTGCAGCAGATCACGTGATGTAGGCAACAGA
CGTGCAACAAGCCGTGGGGTTGAGGAGGAGACGTGCTCAAGTTTTGCATG
CCTTAGCTGTTTAAACAGCGTTTCTACCTGTATACGATTTATCCTGAGGA
CGTACTGTAGAAGCTTTCCAGCAGGTTGATCACCGATCGTCAATCGTCCC
CTTCCTACATTGCTAGCTACTGTTTGTTGTTGTAGAAGTATATAGCATAC
TGCGCATTTTCAGGGGACGGGAACCATCAACACCCCCATCCCCCATCCCC
TCTCCCTCTCAGCCTCTTTTATTGCTTTTATTGCTTTTTCGAAAACGACG
TCTCCAGCTGCGTGGATTTATAATAACAAGGCCAACAAATGCGACGTTTG
TCGTACAGCATGTCGATTACGAGTCACCTGTAGCATGTGTCTGTGTGTGT
GTCTCTCCCCACCATTTCCTCTCCCCCCCCGCTGCGGGAAAAGTGACAAG
GGATACTGCCTTCCAGGGTGGATAAGGGGGCGGGGGGGGGGGAGGTGATT
CAGACTCGACTCTCGCCTCTGTTTTTAATTTATTTTGAAAAACAAGGCAC
CATCGCGATCGCGGGTTTAAGAAGGGTATATCCGTGCAAGAGGGGCAACC
CAGTCCTTTTCCTGGATATAATGCTGCTGAGGGACGGAGTCGTGTATTTT
TTTTACACGACACTTGTGCTGTACCCAGGGCTTTTTCGTAAAATGTACTA
CTATAATACTATACTACTAGTACAACTAGATTAGTATTGATACTGTCAAT
GATCTGTTTTGGTTGTCAATGATCTGTTTTGGTTGTCAATGATCTGTTTT
GGTTGTCAATGATCTGTTTTGGTTGTTCTTTCTTACTTTTTATTTTTGTC
CCCCTAGTTTAGGTGTGTTGGTAATGAAAATACCAGAATTCACTCGCCGG
CACTGCGTGCTCGCCCAGTGGTGATCGTGGATAAGATCTACCGGAAGCCT
TCGCGTTGACACCCTGTTGTGTATGTATTTATGTATGCGTGTGTGTGAGT
TCTTGGTCGGTCTGCTTTTTTCTGACCTCTCGATCTTGCTTTATATTGGC
TTGATCTCTCCCCACCCCAACATCAGTACTACCATAGTACTTGTTGGTCA
CGATTGATAGTGAAAATGAGGTACACCTTTGTCGTGGGAACGCCTCTTCT
GTGGTATACCTTTTTTTATGCGTCTATATTTTGAAGATAATTGCGTACAT
CAGGCGGTCATTTTTCCTACAAATGTTTTTCTGGGTGGACCTGTATCTCT
GTGGTGATGACGTCATCATATTTAGAAGAGTATGGATAAACCAATTTAGT
TACCTCCTGATTGTGGCCAGCTGAACAGGGAAAATTATGTTTACTATCCC
CGTTCGCGCTTGAGAATTTGGTCTCGCGAGACGGGTTCGGCCATCTCGTC
CCGCATCAGCCTGCTCATTCTCTCAACACAGGTTGAATCTGGTTTCAGTC
TGCTCATTCTCTCAACCTAGAGGCTGAATATGGTGCGTACTCCCGGGATC
CTCTCGTTTTTCGCGACGACGTCCATCTCTACCGTCAACCGCCATCGGGC
CTATCTCTATTTCATCAGATCACGCAATTGCGTACCGATGACGTTTACCC
ACGAGCGTCTGCCGACACTGAGCCAGCAGTACTTAAGGTAGCTTGGGTAA
CGGGTGCAGCCTATTTAGGTAACCCCATGGACCAACTATTGTGCGCCTCT
CTTTTCCTACACACACTATTGGTACAGCGGACATGTACATATCGGAGGTG
TTATATTCTAGAGTGATTATATGTACTTAAGGGCTTGCTTGTTTTGTTTT
GTTAGAATCAGTAGTGGTGGAAGCGACGTGACGTATGCCTTTTCTCTAAA
AAGTATATGAACTCATTAGACC
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Coding sequence (CDS) from alignment at H-elongata_contig64867:226..2797+

>mRNA_H-elongata_contig64867.14075.1 ID=mRNA_H-elongata_contig64867.14075.1|Name=mRNA_H-elongata_contig64867.14075.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig64867:226..2797+ (Himanthalia elongata Himel1 dioecious)
ATGCCTCCAGCAGAAGGAAAAACACCCCCAACTGCGGTTGGCGGCGAAGG
CAGCAGCGTGATCGGTCAACAGGAGAGTTCCGAGCACGGGATACCAACAT
TGCCCGGGGCGGCAGAGCCGAAGGAATACGGCTCTCTTACAATCCCCGAG
GCCCCCGTAGATCATCAACCCATTGGTTCCCCAGCACCGCCGGAAGATGC
CGCCGCTAGCTTTGGAGGAGAAGGAGCCGCCTACTTTACCCAGACGGGTC
GTGTTCCTTCGTCCGCGCCGTCTTACCTGCCCCCTTTCTTTCCCGGGGAC
CCTAGTTCTAGCACTGGCGGCGGTGGTGAATTCGATGGCATGGGGGCGCC
TCCGCAACAACCTTTGTACCCTACGGAACCCGGACATGAGTCTATTTCTG
GGTCTGTGACTGACCCCGCCCTGTCATGGTACGCGACACAGACTCCCGCC
CCGGCACCCACGCCGGCGCCGACGTTCGCACCCGCGCCGGCGCGGCCGAG
GACGCCGGTGCCTTCGGCGTCGGGAAGCAGGCGGTCGGGTGGTGGGCGTA
AACCGCTAGAAGGCAACCTGGCGGACGCGATCGAGCACTGCCGATACGCA
CTTCGGGCGCTGGAGCGCAAGGAAGTGGACCTCGCGGTGCAGAGGCTACA
CGACGCGTTGCAGCAGATCACGTGAATGCCTCCAGCAGAAGGAAAAACAC
CCCCAACTGCGGTTGGCGGCGAAGGCAGCAGCGTGATCGGTCAACAGGAG
AGTTCCGAGCACGGGATACCAACATTGCCCGGGGCGGCAGAGCCGAAGGA
ATACGGCTCTCTTACAATCCCCGAGGCCCCCGTAGATCATCAACCCATTG
GTTCCCCAGCACCGCCGGAAGATGCCGCCGCTAGCTTTGGAGGAGAAGGA
GCCGCCTACTTTACCCAGACGGGTCGTGTTCCTTCGTCCGCGCCGTCTTA
CCTGCCCCCTTTCTTTCCCGGGGACCCTAGTTCTAGCACTGGCGGCGGTG
GTGAATTCGATGGCATGGGGGCGCCTCCGCAACAACCTTTGTACCCTACG
GAACCCGGACATGAGTCTATTTCTGGGTCTGTGACTGACCCCGCCCTGTC
ATGGTACGCGACACAGACTCCCGCCCCGGCACCCACGCCGGCGCCGACGT
TCGCACCCGCGCCGGCGCGGCCGAGGACGCCGGTGCCTTCGGCGTCGGGA
AGCAGGCGGTCGGGTGGTGGGCGTAAACCGCTAGAAGGCAACCTGGCGGA
CGCGATCGAGCACTGCCGATACGCACTTCGGGCGCTGGAGCGCAAGGAAG
TGGACCTCGCGGTGCAGAGGCTACACGACGCGTTGCAGCAGATCACGTGA
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