mRNA_H-elongata_contig64834.14072.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE) HSP 1 Score: 113 bits (282), Expect = 7.000e-26 Identity = 68/176 (38.64%), Postives = 99/176 (56.25%), Query Frame = 1
Query: 4 ARSKELVVATWNVRTMSERGTNGPGY-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPAAGYVVYCSGHCDSDGGKPGILEVGLAVRESIARALGPDGIVPEHISARLLKVKVIFKHRAVITFIVGYALAETAATCH------KSKFWKELRSTIAEVPAIDHLILMMDANARTG 510
AR +L T+NVRT++ G N G+ ++ + CD I +QETRR+G+ +I GYV+ SG K G+ VG+A++E + ++G +G E S RL+KV++ +TF+VGYAL ET T K FW L + I EV + DHL+++MDANARTG
Sbjct: 815 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEVMWESVGEEGRTVECSSPRLMKVRLQIGRTCRVTFVVGYALTETVRTTAGRDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 988
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 112 bits (281), Expect = 7.500e-26 Identity = 68/176 (38.64%), Postives = 99/176 (56.25%), Query Frame = 1
Query: 4 ARSKELVVATWNVRTMSERGTNGPGY-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPAAGYVVYCSGHCDSDGGKPGILEVGLAVRESIARALGPDGIVPEHISARLLKVKVIFKHRAVITFIVGYALAETAATCH------KSKFWKELRSTIAEVPAIDHLILMMDANARTG 510
AR +L T+NVRT++ G N G+ ++ + CD I +QETRR G+ +I GYV+ SG K G+ VG+A++E++ ++G +G E IS RL+KV++ +TF+VGYA ET T K FW L + I EV + DHL+++MDANARTG
Sbjct: 170 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 343
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.120e-25 Identity = 68/176 (38.64%), Postives = 99/176 (56.25%), Query Frame = 1
Query: 4 ARSKELVVATWNVRTMSERGTNGPGY-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPAAGYVVYCSGHCDSDGGKPGILEVGLAVRESIARALGPDGIVPEHISARLLKVKVIFKHRAVITFIVGYALAETAATCH------KSKFWKELRSTIAEVPAIDHLILMMDANARTG 510
AR +L T+NVRT++ G N G+ ++ + CD I +QETRR G+ +I GYV+ SG K G+ VG+A++E++ ++G +G E IS RL+KV++ +TF+VGYA ET T K FW L + I EV + DHL+++MDANARTG
Sbjct: 81 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 254
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.770e-25 Identity = 69/176 (39.20%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 4 ARSKELVVATWNVRTMSERGTNGPGY-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPAAGYVVYCSGHCDSDGGKPGILEVGLAVRESIARALGPDGIVPEHISARLLKVKVIFKHRAVITFIVGYALAETAATCH------KSKFWKELRSTIAEVPAIDHLILMMDANARTG 510
AR +L T+NVRT++ G N G+ ++ A +CD I +QETRR G+ I GYV+ SG K G+ VG+A++E++ ++G G E IS RL+KV++ +TF+VGYA ETA K FW L + I EV + DHL+++MDANARTG
Sbjct: 85 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTG 258
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.790e-25 Identity = 66/176 (37.50%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 4 ARSKELVVATWNVRTMSERGTNGPGY-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPAAGYVVYCSGHCDSDGGKPGILEVGLAVRESIARALGPDGIVPEHISARLLKVKVIFKHRAVITFIVGYALAETAATCH------KSKFWKELRSTIAEVPAIDHLILMMDANARTG 510
AR +L T+N+RT+ N G+ ++ + CD + +QE RRDG+ +I P GYV+ SG K G+ VG+A++E++ ++G +G E IS RL+KV++ +TF+VGYA ET T K FW L + I EV + DHL+++MDANARTG
Sbjct: 20 AREGDLSFGTFNLRTLHYSDRNPIGHNVMTVMQICSATGCDVVGLQENRRDGQGSI--PHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTG 193
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.030e-25 Identity = 67/176 (38.07%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 4 ARSKELVVATWNVRTMSERGTNGPGY-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPAAGYVVYCSGHCDSDGGKPGILEVGLAVRESIARALGPDGIVPEHISARLLKVKVIFKHRAVITFIVGYALAETAATCH------KSKFWKELRSTIAEVPAIDHLILMMDANARTG 510
AR +L T+NVRT++ G N G+ ++ + CD I +QETRR+G+ +I GYV+ SG K G+ VG+A++E++ ++G +G E I RL+KV++ ITF+V YA ET T K FW L + I EV + DHL+++MDANARTG
Sbjct: 143 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTG 316
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE) HSP 1 Score: 110 bits (275), Expect = 6.120e-25 Identity = 67/176 (38.07%), Postives = 99/176 (56.25%), Query Frame = 1
Query: 4 ARSKELVVATWNVRTMSERGTNGPGY-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPAAGYVVYCSGHCDSDGGKPGILEVGLAVRESIARALGPDGIVPEHISARLLKVKVIFKHRAVITFIVGYALAETAATCH------KSKFWKELRSTIAEVPAIDHLILMMDANARTG 510
AR +L T+NVRT++ G N G+ ++ + CD I +QETRR+G+ +I GYV+ SG K G+ VG+A++E++ ++G +G E IS RL+KV++ H + +VGYA ET T K FW L + I EV + DHL+++MDANARTG
Sbjct: 128 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGHTCGVISVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 301
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Match: A0A6H5J6W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W7_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.980e-24 Identity = 65/176 (36.93%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 4 ARSKELVVATWNVRTMSERGTNGPGY-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPAAGYVVYCSGHCDSDGGKPGILEVGLAVRESIARALGPDGIVPEHISARLLKVKVIFKHRAVITFIVGYALAETAATCH------KSKFWKELRSTIAEVPAIDHLILMMDANARTG 510
AR +L T+NVRT++ G N G+ ++ + CD + + ETRR+G+ +I GYV+ SG K G+ +G+A++E + ++G +G E IS RL+KV++ +TF+VGYA ET T K FW L + I EV + DHL+++MDANARTG
Sbjct: 32 AREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVVGLHETRREGQGSIAHD--GYVIIWSGARAGTKEKRGVHGMGIAIKEVMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 205
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 107 bits (268), Expect = 5.100e-24 Identity = 65/176 (36.93%), Postives = 97/176 (55.11%), Query Frame = 1
Query: 4 ARSKELVVATWNVRTMSERGTNGPGY-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPAAGYVVYCSGHCDSDGGKPGILEVGLAVRESIARALGPDGIVPEHISARLLKVKVIFKHRAVITFIVGYALAETAATCH------KSKFWKELRSTIAEVPAIDHLILMMDANARTG 510
AR +L +NVRT++ G G+ ++ + CD I +QETRR+G+ +I GYV+ SG K G+ VG+A++E++ ++G +G E IS RL+KV++ +TF+VGYA ET T K FW L + I EV + DHL+++MDANART
Sbjct: 54 AREGDLSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTA 227
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 107 bits (268), Expect = 5.220e-24 Identity = 66/176 (37.50%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 4 ARSKELVVATWNVRTMSERGTNGPGY-AEDLLMFAAKYECDFIAIQETRRDGRTTIQAPAAGYVVYCSGHCDSDGGKPGILEVGLAVRESIARALGPDGIVPEHISARLLKVKVIFKHRAVITFIVGYALAETAATCH------KSKFWKELRSTIAEVPAIDHLILMMDANARTG 510
AR +L T+NV T++ G N G+ ++ + CD I +QETRR+G+ +I GYV+ SG K G+ VG+A++E++ ++G +G E IS RL+KV++ +TF+V YA ET T K FW L + I EV + DHL+++MDANARTG
Sbjct: 652 AREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTG 825 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64834.14072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64834.14072.1 >prot_H-elongata_contig64834.14072.1 ID=prot_H-elongata_contig64834.14072.1|Name=mRNA_H-elongata_contig64834.14072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp AARSKELVVATWNVRTMSERGTNGPGYAEDLLMFAAKYECDFIAIQETRRback to top mRNA from alignment at H-elongata_contig64834:2916..3425+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64834.14072.1 ID=mRNA_H-elongata_contig64834.14072.1|Name=mRNA_H-elongata_contig64834.14072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig64834:2916..3425+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64834:2916..3425+ >mRNA_H-elongata_contig64834.14072.1 ID=mRNA_H-elongata_contig64834.14072.1|Name=mRNA_H-elongata_contig64834.14072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig64834:2916..3425+ (Himanthalia elongata Himel1 dioecious)back to top |