mRNA_H-elongata_contig11825.1407.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: D8LE32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE32_ECTSI) HSP 1 Score: 281 bits (719), Expect = 7.050e-84 Identity = 137/218 (62.84%), Postives = 160/218 (73.39%), Query Frame = 1
Query: 1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHMIDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIKAHAGALTTMI----VMRYALATGSADGNIKLWTSSLEMARCIDVKALG 642
+VCSGE GA+PRVCVWCAET + R+ P + LVVS+G+D AHSVAVFHW+SR+TLFTAPSGPEPVL H++ EN+FVSCGVDH+R WTR G FEV++GIFGRKGA QPMLCC SLGD+ +++VLTGSTSGH+YVWEGRNCT CIKAH GA+ M LATGSADG ++LWTSSLEMA CIDVKALG
Sbjct: 129 IVCSGEFGARPRVCVWCAETSPLVK-----ERD-----------------PRHYKLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPEPVLGCHVVHENLFVSCGVDHLRLWTRVGGRFEVEKGIFGRKGARQPMLCCISLGDEGSEMVLTGSTSGHLYVWEGRNCTRCIKAHTGAIMAMARGDGTEHQGLATGSADGKVQLWTSSLEMAVCIDVKALG 324
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: A0A835ZKM6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKM6_9STRA) HSP 1 Score: 152 bits (383), Expect = 9.550e-39 Identity = 88/221 (39.82%), Postives = 123/221 (55.66%), Query Frame = 1
Query: 1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAH--SVAVFHWRSRSTLFTAP---SGPEPVLDSHMIDENMFVSCGVDHVRFWTRTD-GP-FEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIKAHAGALTTMIV-MRYALATGSADGNIKLWTSSLEMARCIDVKAL 639
+V +G++G +P++ VWCAETC L FRG H GI+ + FSPD L +S+G +P S+AV HW S++T+FT+ +G + + + F +CGVDHV W R+ GP FE G+FG G Q LCC LG D + TG SGH+ +WEGRNCT C+K HA A+T + A TG+ADG ++A C D ++L
Sbjct: 431 VVATGQLGRRPKLAVWCAETCTLLGSFRGVHGSGIALVRFSPDAA----------LTLSVGMEPGPEVSLAVRHWPSQTTIFTSTCSGAGAPTIAVTFAGGGDRFATCGVDHVTLWDRSSTGPGFERSTGVFGPTGLQQTQLCC--LGFDGGAVA-TGGGSGHVSLWEGRNCTKCVKGHAAAVTVIAAGAGGAFVTGAADG---------KLAACFDTRSL 629
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: A0A7S1CBA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBA4_9STRA) HSP 1 Score: 137 bits (346), Expect = 2.800e-34 Identity = 71/219 (32.42%), Postives = 114/219 (52.05%), Query Frame = 1
Query: 4 VCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSP-DGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHMIDENMFVSCGVDHVRFW---TRTDGPFEVDQGIFGRKG--ALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIKAHAGALTTMIVMRYALATGSADGNIKLWTSSLEMARCIDVKALG 642
V +G+MG KPRV VW +T E +S+ GFHR + + F DG+ L+ ++G+D H++ V+ W +++ S VL +D N V+ GV H+ FW +RT +G++GR +QP++ + + D ++++G+ SGH+Y W+GRNC +KAH + M L TG DG +++WT SLE D+ G
Sbjct: 181 VATGQMGRKPRVVVWRTDTMETVSVIEGFHRRAVCAVAFDKKDGR----------LLATVGQDDDHTLFVYDWEKERKIYSEKSDKNKVLAITWLDNNTLVTAGVKHILFWDLKSRTK-----KKGLWGRAKNVKIQPLMSLAPIND--GAMLVSGTASGHIYAWDGRNCVRAVKAHDANVAAMWSCNAGLVTGGKDGKVRIWTHSLEPKNVFDIATFG 382
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: A0A7S3M6P9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6P9_9STRA) HSP 1 Score: 130 bits (327), Expect = 4.340e-34 Identity = 70/213 (32.86%), Postives = 114/213 (53.52%), Query Frame = 1
Query: 1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHMIDENMFVSCGVDHVRFWTRTD--GPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIKAHAGALTTMIVMRY-------ALATGSADGNIKLWTSSLEM 612
+ SGE GA+P V VW +T LS +GFHR G++ + FSPD + +V++G D H +AV+ WR++ L+++ + +PV D + ++ SCG H+ FW ++ G F+ +G FG + + C +G K V TGS +G +Y+WEGRN + IK H GA+ V+ + L T ++G + +W S +E+
Sbjct: 20 IAASGECGARPAVHVWDVDTRTTLSTLQGFHRNGVAQLDFSPDKEK----------LVTLGMDSYHCLAVYRWRTQERLWSSRTTVDPVHDVRFLSNDIIASCGHVHITFWRESNNSGVFKRYRGQFGTAVKPETLWCVGVVG----KTVFTGSETGMIYIWEGRNLINSIKGHTGAIYACHVIDHKDEEKENGLVTACSEGKVLVWNSKMEL 218
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: A0A2R5G5S9_9STRA (Echinoderm microtubule-associated protein-like 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S9_9STRA) HSP 1 Score: 137 bits (345), Expect = 1.180e-33 Identity = 79/223 (35.43%), Postives = 118/223 (52.91%), Query Frame = 1
Query: 4 VCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVL---------DSHMIDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEG-RNCTSCIKAHAGALTTMIVMRYALATGSADGNIKLWTSSLEMARCIDVKALG 642
V +GE G P++ +W A T + + RG H GI + FSP+ +VS+G+DP H+VA++ W +R+ +F+A S VL ++ FV+CG DH+ FW + D + +G+FG+ GA Q ML + +N +++GS SGH+YVW+G RN IK H A+T + L +G ADG I+LW+ LE DV LG
Sbjct: 369 VATGERGHPPKIHIWDASTMKIIVTLRGAHAGGIGCLAFSPEQGG--------RWLVSVGQDPEHTVALYDWEARTLVFSAKSTRSRVLSCIFRWPAKETSAGAPPTFVTCGEDHMSFWNQDDNRRQ-KKGVFGKIGAPQSMLSLACHPKNNR--IISGSLSGHLYVWDGNRNLQRTIKGHDSAVTALYFHSTGLLSGGADGKIRLWSLDLEQGAIFDVAGLG 580
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: UPI0009E5D2B7 (echinoderm microtubule-associated protein-like 6 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5D2B7) HSP 1 Score: 130 bits (327), Expect = 3.020e-31 Identity = 69/213 (32.39%), Postives = 110/213 (51.64%), Query Frame = 1
Query: 1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHM--IDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCI-KAHAGALTTMIVMRYALATGSADGNIKLWTSSLEMARCIDV 630
LV +G++G P +CVW + C+ +SI + H+ G++ + F+ G L+VS+G + H +AV+ WR L T + + D EN+ VSCGV H++FWT +G+FG+ G +Q LC + +D + +G+ SG +Y W+G N + I AH GA+ TM ATGS DG + LW + + +D+
Sbjct: 75 LVATGQVGKDPYICVWDTKACQTVSILKDTHQRGVTCLAFNNTG----------TLLVSVGLEDYHLIAVWDWRKGRVLATVRGHTDRIFDIQFNPYQENVLVSCGVKHIKFWTLRGNALNPKKGVFGKAGEIQTNLCLAFGPND---VTYSGTLSGEIYKWKGHNLSGTIPNAHTGAIFTMHGNNDGYATGSKDGTVILWDNGFKPITKLDM 274
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: A0A2B4RJM9_STYPI (Echinoderm microtubule-associated protein-like 6 n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RJM9_STYPI) HSP 1 Score: 129 bits (324), Expect = 7.480e-31 Identity = 68/206 (33.01%), Postives = 110/206 (53.40%), Query Frame = 1
Query: 1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHM--IDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCI-KAHAGALTTMIVMRYALATGSADGNIKLWTSSLE 609
LV +G++G P VCVW ++TC+ +SI + H+ G++ + F+ G L+VS+G + H ++V+ WR L + + + D EN+ VSCGV H++FWT +G+FG+ G +Q LC + +D + +G+ SG +Y W+G N + I AH GA+ TM ATGS DG + LW ++ +
Sbjct: 75 LVATGQVGKDPYVCVWDSKTCQTVSILKDAHQRGVTCLAFNNTG----------TLLVSVGLEDYHLISVWDWRKGRALASVRGHTDRIFDIQFNPYQENLLVSCGVKHIKFWTLCGNALNPKKGVFGKAGEIQTNLCLAFGPND---VTYSGTLSGEIYKWKGHNLSGTIPNAHNGAIFTMHGNSDGYATGSKDGTVILWDNNFK 267
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: UPI001E1D42AF (LOW QUALITY PROTEIN: echinoderm microtubule-associated protein-like 6 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D42AF) HSP 1 Score: 124 bits (311), Expect = 4.130e-29 Identity = 64/201 (31.84%), Postives = 101/201 (50.25%), Query Frame = 1
Query: 1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHM--IDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIKA-HAGALTTMIVMRYALATGSADGNIKLW 594
L+ +G+ G P +C+W + + SI +G H G+ + F DG N +VS+G DP ++ V+ W+ + T + V D +N+ VSCGV H++FW+ +GIFG++G +Q +LC S D I +G+ G +Y+W G I+A H GA+ +M + +TGS DG KLW
Sbjct: 75 LIATGQTGKSPYICIWDSISLNTCSILKGGHTHGVGAVSFDKDG----------NRLVSVGIDPQATICVWDWKKGKVIATVRGHTDRVFDVKFNPYQDNVIVSCGVKHIKFWSLCGNALSAKKGIFGKEGEIQTILCVSFGPSD---ITYSGTLGGDVYIWRGNKLDRVIQAAHKGAIYSMDMSEEGYSTGSKDGTAKLW 262
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: UPI000719B3DE (LOW QUALITY PROTEIN: echinoderm microtubule-associated protein-like 6 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719B3DE) HSP 1 Score: 121 bits (303), Expect = 4.830e-28 Identity = 68/207 (32.85%), Postives = 104/207 (50.24%), Query Frame = 1
Query: 1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDS--HMIDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIK-AHAGALTTMIVMRYALATGSADGNIKLWTSSLEM 612
+VC+G++G P +CVW + T + LSI + H GI+ I F DG N +VS+G D +V V+ WR L T + V+D H EN VSCGV H++FW +G+FG+ ++ +LC + D + +G TSG++Y W+G + I+ AH GA+ +M TG DG + W+S +
Sbjct: 76 IVCTGQIGKSPYMCVWESVTMKTLSILKDGHTTGIAAIDFCNDG----------NRLVSVGLDNYSTVNVWDWRKGRILATTRGHSDRVIDIQFHRFTENRIVSCGVKHIKFWNLCGNSLTCKKGVFGKLEKIETVLCLAFASGD---VTYSGMTSGNIYKWQGTKLKNVIEDAHKGAVYSMDTCEEGFVTGGKDGFVITWSSDFNI 269
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Match: B3SCP1_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SCP1_TRIAD) HSP 1 Score: 120 bits (301), Expect = 8.990e-28 Identity = 65/206 (31.55%), Postives = 103/206 (50.00%), Query Frame = 1
Query: 1 LVCSGEMGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLVVSIGEDPAHSVAVFHWRSRSTLFTAPSGPEPVLDSHM--IDENMFVSCGVDHVRFWTRTDGPFEVDQGIFGRKGALQPMLCCSSLGDDNAKIVLTGSTSGHMYVWEGRNCTSCIK-AHAGALTTMIVMRYALATGSADGNIKLWTSSLE 609
LV +G++G P +CVW T +A+SI + ++ GI+ + F+ +G +L+VS+G + +H +AV+ W L + P E V D N VSCGV H+ FW+ +GIFGR G +Q +LC + D I+ +G+ SG +Y W + AH A+ T+ TGS DG ++LW + +
Sbjct: 75 LVATGQVGNSPYICVWDTGTTQAVSILKDSNKRGIAGLAFNGNG----------SLLVSVGLEDSHQIAVWDWAKGRILASVPGHTERVFDVQFNPFVNNQLVSCGVKHINFWSLCGNALMAKKGIFGRAGEIQTLLCLAFAPDS---IIYSGTLSGDIYKWRNHELIHNYQNAHRSAIFTIFQCNDGYTTGSRDGTVRLWDTEFK 267 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11825.1407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11825.1407.1 >prot_H-elongata_contig11825.1407.1 ID=prot_H-elongata_contig11825.1407.1|Name=mRNA_H-elongata_contig11825.1407.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp MGAKPRVCVWCAETCEALSIFRGFHREGISNICFSPDGQASGTSPSFFNLback to top mRNA from alignment at H-elongata_contig11825:5054..7071- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11825.1407.1 ID=mRNA_H-elongata_contig11825.1407.1|Name=mRNA_H-elongata_contig11825.1407.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2018bp|location=Sequence derived from alignment at H-elongata_contig11825:5054..7071- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11825:5054..7071- >mRNA_H-elongata_contig11825.1407.1 ID=mRNA_H-elongata_contig11825.1407.1|Name=mRNA_H-elongata_contig11825.1407.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig11825:5054..7071- (Himanthalia elongata Himel1 dioecious)back to top |