mRNA_H-elongata_contig64814.14070.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A6H5JKL4_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL4_9PHAE) HSP 1 Score: 297 bits (760), Expect = 2.470e-91 Identity = 184/303 (60.73%), Postives = 214/303 (70.63%), Query Frame = 1
Query: 1 GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEG--------TAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPA-----------AG-----SPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSR------------AHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGWSAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKK 801
GRK+AVTGALRGCGPAIVKRLLQ+GA+V+AADR MSN+QA AAGL +G T +ADA+A GRLV FD+GG GDEDGACRLS LC ESFGGMDGLVCNT+ P+ ++ A AG +PL+DLEPSDWADALTGALTEPMLAVKHALPLL+ AC+ G V AGG +VNV T+ P S ++ ETL AA GGL LTHALA+SSGP+VRVNAVSVPEGSGR + G +A R GKD A+AV+FLLSNRAG VTGQNL+VD G + +K
Sbjct: 559 GRKVAVTGALRGCGPAIVKRLLQEGAAVIAADRGMSNEQATAAGLRPAGDGDGASAAGTTPEADALAEGRLVFFDMGGAGDEDGACRLSSLCVESFGGMDGLVCNTSAPAMLVGDETGGALPNGASFGGGSAGGDGIVNPLEDLEPSDWADALTGALTEPMLAVKHALPLLQAACATGKVSAGG----IVNVVCTSLPASEIGLAAVSGAGVISNRETLTAAAGGLAGLTHALALSSGPYVRVNAVSVPEGSGRPAAGMTLTARGE-RVGKDAASAVTFLLSNRAGSVTGQNLVVDDGAARRK 856
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: D8LLV4_ECTSI (Myosin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV4_ECTSI) HSP 1 Score: 303 bits (776), Expect = 3.000e-91 Identity = 187/299 (62.54%), Postives = 215/299 (71.91%), Query Frame = 1
Query: 1 GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEG--------TAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPA--------AGS--------PLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSR------------AHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGWSAASRA-RAGKDTAAAVSFLLSNRAGCVTGQNLIVDGG 786
GRK+AVTGALRGCGPAIVKRLLQ+GA+V+AADR MSN+QA AAGL +G T +ADA+A GRLV FD+GGPGDEDGACRLS LC ESFGGMDGLVCNT+ P+ ++ A AGS PL+DLEPSDWADALTGALTEPMLAVKHALPLL+ AC++G V AGG +VNV T+ P S ++ ETL AA GGL LTHALA+SSGPHVRVNAVSVPEGSGR + G +A +R R GKD A+AV+FLLSNRAG VTGQNL+VD G
Sbjct: 997 GRKVAVTGALRGCGPAIVKRLLQEGAAVIAADRGMSNEQATAAGLRPADDGDGASAAATTPEADALAEGRLVFFDMGGPGDEDGACRLSSLCVESFGGMDGLVCNTSAPAMLVGDEAGGALPNGGSFGAGSAGGDGIVNPLEDLEPSDWADALTGALTEPMLAVKHALPLLQAACAKGKVSAGG----IVNVVCTSLPASGPGLAAVSGAGAISNRETLTAAAGGLAGLTHALALSSGPHVRVNAVSVPEGSGRPA--AGMTATARGGRVGKDAASAVTFLLSNRAGSVTGQNLVVDDG 1289
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A2A2FWG1_9PSED (Oxidoreductase n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A2A2FWG1_9PSED) HSP 1 Score: 121 bits (304), Expect = 9.490e-30 Identity = 114/287 (39.72%), Postives = 135/287 (47.04%), Query Frame = 1
Query: 16 VTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGL--LGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGW---------------------SAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAY 807
VTGA RG G I LL+ G SVV AD D QA A L LGV E V D+ DE R E +E FG +DGLV N + D DS P L+ L W LT +LT L KHAL LLRE+ GGA+VN+A T + S A+ E AA+ GGLVALTHA+AVS GP +RVNAVS GW + R +D A VSFLLS AG +TGQNL+ DGGM+ + Y
Sbjct: 4 VTGAARGIGKGIATSLLRAGWSVVIADIDELAGQAAAEELARLGVVE------------FVTLDVS---DEAAVIRCLERIEEDFGQLDGLVNNAGI----ADPDSGP-----LEQLTLEAWNRWLTTSLTGSFLVSKHALRLLRES-----------GGAIVNIASTRALQSEANTEAYAASKGGLVALTHAMAVSLGPDIRVNAVSP-----------GWIDTRPPALQASDPLRALDHEQHSVGRVGQPEDIGALVSFLLSPEAGFITGQNLVADGGMTRQMLY 244
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A1L3GI14_SYNAC (Short-chain dehydrogenase n=2 Tax=Syntrophotalea acetylenica TaxID=29542 RepID=A0A1L3GI14_SYNAC) HSP 1 Score: 119 bits (299), Expect = 7.010e-29 Identity = 109/288 (37.85%), Postives = 133/288 (46.18%), Query Frame = 1
Query: 16 VTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGWSAASRA----------------------RAGK--DTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAY 807
VTG RG G AIV +LL G V ADRD+ +A G D GRL +F + GDE G + E FG +D L+ N PA G+PL+ L W LT LT L KHA LLR + GA+VN+A T + S HGE AA+ GGLVALTHALAVS GP VRVN VS GW AA+ + R G+ D A V+FL+S AG +TGQN +VDGGM+ + Y
Sbjct: 14 VTGGARGIGRAIVDKLLAMGMRVAVADRDVKACEALT--------GQYARD----GRLAVFCMD-VGDEAGVAAAMDQLREKFGRLDALINNAG---------HGPAHGTPLESLALEAWNHILTSNLTGAFLCCKHAAGLLRRSR-----------GAIVNIASTRALQSEPHGEAYAASKGGLVALTHALAVSLGPDVRVNCVSP-----------GWIAAADSQTQGTPGGPILRPEDHAQHPVGRVGRPADIAEIVAFLVSPAAGFITGQNFVVDGGMTRRMVY 257
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A7V1BPU5_9GAMM (SDR family oxidoreductase n=2 Tax=root TaxID=1 RepID=A0A7V1BPU5_9GAMM) HSP 1 Score: 119 bits (298), Expect = 8.540e-29 Identity = 106/290 (36.55%), Postives = 137/290 (47.24%), Query Frame = 1
Query: 4 RKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGW---------------------SAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAYL 810
R VTGA RG G + RLL+DG +VV D D ++G Q+ + A V D+ DE E +E FG ++GLV N + D DS P ++ L +W +T LT L KHA+PLLRE+ GG++VN+A T + S AH E AA+ GGLVALTHALA+S GP +RVNAVS GW A R D AA V+FLL N AG +TGQNL+ DGGM+ + Y+
Sbjct: 7 RVALVTGAARGIGRGVALRLLRDGWAVVVGDIDE---------VIG-QDTVEELARFGAVEFVELDVT---DESSVVSCIERIEEDFGQLNGLVNNAGI----ADPDSGP-----VEQLSLEEWNRRITTNLTGAFLLSKHAIPLLRES-----------GGSIVNMASTRAIQSEAHTEAYAASKGGLVALTHALAISLGPTIRVNAVSP-----------GWIDTRPSPQQHGDPLRAIDHDQHAVGRVGQPDDIAALVAFLLGNDAGFITGQNLVADGGMTRQMIYV 252
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A7J4ZNP3_9DELT (Glucose 1-dehydrogenase n=3 Tax=Oryzomonas TaxID=2855184 RepID=A0A7J4ZNP3_9DELT) HSP 1 Score: 118 bits (295), Expect = 2.580e-28 Identity = 109/285 (38.25%), Postives = 140/285 (49.12%), Query Frame = 1
Query: 1 GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAA--GLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVS---VPEGSGRSSG----------GGGWSAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAYL 810
GR VTG +G G I KRLL++G +VV ADRD + Q A G LG D +A V D+ DE + FG +D L+ N S+P P++ LE S+W L LT L KHA+P LR A GGA+VN+A T + S A E +A+ GGLVALTHALAVS GPH+RVN VS + + SG G A R +D A V++L+S +AG +TGQN IVDGGM+ K Y+
Sbjct: 7 GRVALVTGGGQGIGKGIAKRLLEEGMAVVIADRDAAAAQETAGEFGSLG--------DVLA----VTLDVA---DEAAVVGALDQTLSRFGRLDALINNAGHGSSPP---------GPVELLELSEWNRVLGTNLTGAFLCAKHAVPALRSA-----------GGAIVNIASTRALQSEADTEAYSASKGGLVALTHALAVSLGPHIRVNCVSPGWIAVDDWKKSGKRTAPELRPEDHGQHPAGRVGRPEDIAGMVAYLVSPQAGFITGQNFIVDGGMTRKMIYV 256
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A6C0TTD0_9PSED (SDR family oxidoreductase n=4 Tax=Pseudomonas TaxID=286 RepID=A0A6C0TTD0_9PSED) HSP 1 Score: 117 bits (292), Expect = 6.480e-28 Identity = 104/291 (35.74%), Postives = 130/291 (44.67%), Query Frame = 1
Query: 1 GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGW---------------------SAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAYL 810
GR VTGA RG G + RLL+DG SVV AD D + G QE + + V D+ DE E +E FG +DGLV N + A PL+ L W + LT L KHA+ LLR GGA+VN+A T + S A E AA+ GGL+ALTHA+AVS GP +RVNAVS GW AA R D AA V+FLL AG +TGQN ++DGGM+ + Y+
Sbjct: 6 GRVALVTGAARGIGYGVATRLLRDGWSVVLADIDEA----------GGQEAAEELARLGTVEFVTLDVA---DEASVIACMERVEEDFGQLDGLVNNAGI---------ADPDNGPLEQLSLDSWNRLIGTNLTGAFLLSKHAVGLLRRR-----------GGAIVNMASTRAVQSEAQTEAYAASKGGLIALTHAMAVSLGPEIRVNAVSP-----------GWIDTRPPVQQASDPLRVVDHEQHAAGRVGQPADVAALVAFLLGPDAGFITGQNYLIDGGMTRQMFYV 252
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A550J594_9DELT (Glucose 1-dehydrogenase n=1 Tax=Desulfuromonas acetexigens TaxID=38815 RepID=A0A550J594_9DELT) HSP 1 Score: 114 bits (286), Expect = 5.250e-27 Identity = 111/293 (37.88%), Postives = 132/293 (45.05%), Query Frame = 1
Query: 1 GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGW-----------------SAASRA-----RAG--KDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAY 807
GR I VTG +G G IV+ LL GA+VVAAD D E A + A +L + DE R E FG + GLV N A+ A A PL+ L DW L LT L + ALPLLR G GAVVN+A T + S A E AA+ GGLVALTHA+A+S GP VRVNA+S GW S A RA R G +D AA +FLL AG +TGQN +VDGGM+ K Y
Sbjct: 6 GRTILVTGGAQGIGQGIVRYLLSHGANVVAADID--------------GEACAFLERELASPRLLTVVADVADEIAVRRCLEEVHRRFGSLSGLVNNAAL---------AHAHSGPLEALSLEDWNRVLAVNLTGAFLVTREALPLLRAV----------GDGAVVNIASTRALQSEAECEAYAASKGGLVALTHAMALSLGPEVRVNAISP-----------GWIETGEMQKPSARHPVNHSDADRAQHPVGRVGLPEDIAALAAFLLGPEAGFITGQNFVVDGGMTRKMIY 254
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: D7CTY0_TRURR (Short-chain dehydrogenase/reductase SDR n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) TaxID=649638 RepID=D7CTY0_TRURR) HSP 1 Score: 114 bits (284), Expect = 1.180e-26 Identity = 110/293 (37.54%), Postives = 130/293 (44.37%), Query Frame = 1
Query: 4 RKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRLSELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGWS--AASRARAGK----------------------DTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAYL 810
R++ VTG +G G A V LL+ GA V AADRD A A+ A V DE L GG+DGLV N V +PL+ L S W L LT L VKHALP LR A G AVVNVA T + +S E AA+ GGLVALTHALA+S GP VRVN VS GW A + RA + D AAAV++LLS +G VTGQNL+VDGGM+ K Y+
Sbjct: 8 RRLLVTGGAQGIGLATVAYLLRCGARVAAADRDEE----------------ALAELRARHPEVYAQRSDVSDEPSVAALMAAVSAHLGGLDGLVNNAGV-----------MVSAPLEALSLSAWEAVLGTNLTGAFLCVKHALPHLRAAYGATRGGPEPVSSAVVNVASTRALMSEPDTEAYAASKGGLVALTHALAISLGPAVRVNCVSP-----------GWIEVGALKKRAARTPPEHRPEDHAQHPVGRVGTPEDVAAAVAYLLSPESGFVTGQNLVVDGGMTRKMIYV 262
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Match: A0A1I1SHI7_9GAMM (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=1 Tax=Thiohalospira halophila DSM 15071 TaxID=1123397 RepID=A0A1I1SHI7_9GAMM) HSP 1 Score: 113 bits (282), Expect = 1.650e-26 Identity = 107/292 (36.64%), Postives = 138/292 (47.26%), Query Frame = 1
Query: 4 RKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEGTAQADAIAAGRLVLFDLGGPGDEDGACRL---SELCDESFGGMDGLVCNTAVPSTPQDRDSAPAAGSPLQDLEPSDWADALTGALTEPMLAVKHALPLLREACSQGTVGAGGGGGAVVNVAWTTSPLSRAHGETLAAAGGGLVALTHALAVSSGPHVRVNAVSVPEGSGRSSGGGGW---------------------SAASRARAGKDTAAAVSFLLSNRAGCVTGQNLIVDGGMSAKKAY 807
R VTGA RG G I +RL+ DG VV AD + + AR G +A R ++ D+ ++ + R S L +E G +DGLV N + S P +G P+++L+ +DW L LT L KHALP LREA GGA+VN+A T + S E AA+ GGLVALTHALAVS+GP VRVN++S GW A R D AA +FLL AG VTGQ+ +VDGGM+ K Y
Sbjct: 5 RVTLVTGAARGIGFGIARRLVADGGRVVVADIEGAEAAARVLG--------------SAARPLVLDVS----DEASVRAGVASVLAEE--GRLDGLVNNAGI--------SDPESG-PVEELDRADWDRWLAVNLTGAFLLAKHALPALREA-----------GGAIVNIASTRAHQSEPDTEAYAASKGGLVALTHALAVSAGPDVRVNSISP-----------GWIDVRSPEEQAAEPLAPVDHAQHPAGRVGTPADVAALAAFLLGPEAGFVTGQDWVVDGGMTRKMVY 245 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64814.14070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64814.14070.1 >prot_H-elongata_contig64814.14070.1 ID=prot_H-elongata_contig64814.14070.1|Name=mRNA_H-elongata_contig64814.14070.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp GRKIAVTGALRGCGPAIVKRLLQDGASVVAADRDMSNDQARAAGLLGVQEback to top mRNA from alignment at H-elongata_contig64814:729..1541+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64814.14070.1 ID=mRNA_H-elongata_contig64814.14070.1|Name=mRNA_H-elongata_contig64814.14070.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at H-elongata_contig64814:729..1541+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64814:729..1541+ >mRNA_H-elongata_contig64814.14070.1 ID=mRNA_H-elongata_contig64814.14070.1|Name=mRNA_H-elongata_contig64814.14070.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig64814:729..1541+ (Himanthalia elongata Himel1 dioecious)back to top |