prot_H-elongata_contig118217.1406.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig118217.1406.1
Unique Nameprot_H-elongata_contig118217.1406.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length150
Homology
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A060SSE0_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SSE0_PYCCI)

HSP 1 Score: 101 bits (251), Expect = 5.180e-22
Identity = 53/130 (40.77%), Postives = 76/130 (58.46%), Query Frame = 0
Query:   20 DGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 149
            D G + A HA+    EPR  ++AM  P    W+ A   E+       +Y +V RP+++ VV  K ++  K G DGK++KYK RLVA+GF Q+EGV YT+ ++P    AS RMLL+ AA  D E+   D +
Sbjct:  948 DEGDEHAYHASTFSDEPRTYQEAMSRPDAEQWKAACAEELLSFAKAELYDEVERPRNRKVVDCKWVFRIKHGPDGKIQKYKARLVAKGFTQVEGVDYTDTFAPVTKFASIRMLLAFAAKHDLEVHQMDVK 1077          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A6D2JNC7_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JNC7_9BRAS)

HSP 1 Score: 90.9 bits (224), Expect = 1.160e-20
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   36 PRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDG-KVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 149
            PR+  QA +SP W +W  A K E   ++ N  +  + +P    VVG+K LY  K G  G +++++KCRLVAQGF Q EGV Y E +SP     S R++LS    RD EL   D +
Sbjct:    4 PRSMAQARKSPNWKEWDNASKEEWSSLMKNHTWDLIDKPDGARVVGSKWLYTIKSGIPGVELKRFKCRLVAQGFSQTEGVDYNEIFSPVVKHVSIRIMLSAVVNRDYELEQMDVK 118          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: UPI001CB79F24 (hypothetical protein n=1 Tax=Blastococcus sp. CPCC 205250 TaxID=2732513 RepID=UPI001CB79F24)

HSP 1 Score: 91.7 bits (226), Expect = 3.520e-20
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   35 EPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 149
            EP   ++A  S   N W +A K EM+ +  N  +  V  PKD+  +G K ++ RK   +GK+ KYK RLVA+G+ QIEGV Y E +SP     S R +LS AAA D E+   D +
Sbjct:   77 EPGTVKEARASEDANQWEEAMKDEMKSLDQNHTWNLVKLPKDRKAIGCKWVFKRKQDAEGKIGKYKARLVAKGYAQIEGVDYAEIFSPVAKLTSIRTVLSAAAAYDLEIEQMDVK 191          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 95.9 bits (237), Expect = 3.730e-20
Identity = 53/139 (38.13%), Postives = 83/139 (59.71%), Query Frame = 0
Query:   11 ADVEDSLACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 149
            A+V D +    G + A +A++ + +P++  +AM  P    W+ A   E+   V   +Y +V RP+D+ VVG K ++  K G DG++EKYK R+VA+GF Q+EGV YT+ ++P    AS R LL+ AA  D E+   D +
Sbjct:  262 AEVRDGV----GAEHAKNASI-LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVK 395          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 95.9 bits (237), Expect = 3.960e-20
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 0
Query:   35 EPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 149
            +P +   AM      +WRKA + E+       V+++V RP+D+ ++G+K ++  K G DG+VEKYK RLVAQGF Q+EG+ Y E ++P   + S R+LL+ AA  D E+   D +
Sbjct:  994 DPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVK 1108          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A4Y9XTU1_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XTU1_9APHY)

HSP 1 Score: 93.6 bits (231), Expect = 2.530e-19
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 0
Query:    8 IEEADVEDSLACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 149
            +E+A  + S    G  + A  A +   +PR  ++AM  P    W+ A   E+       +Y +V RP+++ VVG K ++  K G DG++EKYK RLVA+GF Q+E V Y E ++PT   ++ R LL+ AAA D E+   D +
Sbjct:  922 VEDAGEQPSRDSVGADEHARRANVS-DDPRTYKEAMSRPDAECWKAACAEELLSFTKAELYDEVERPRNRKVVGCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEDVDYDETFAPTTKFSTIRTLLALAAAHDLEIHQMDVK 1062          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A6D2JI50_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JI50_9BRAS)

HSP 1 Score: 90.9 bits (224), Expect = 3.530e-19
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   36 PRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDG-KVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 149
            PR+  QA +SP W +W  A K E   ++ N  +  + +P    VVG+K LY  K G  G +++++KCRLVAQGF Q EGV Y E +SP     S R++LS    RD EL   D +
Sbjct:    4 PRSMAQARKSPNWKEWDNASKEEWSSLMKNHTWDLIDKPDGARVVGSKWLYTIKSGIPGVELKRFKCRLVAQGFSQTEGVDYNEIFSPVVKHVSIRIMLSAVVNRDYELEQMDVK 118          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A1V9YIL7_9STRA (RNA-dependent DNA polymerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIL7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.200e-18
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 0
Query:    6 PAIEEADVEDSL--ACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 147
            PA+  +D    L  A +G  Q  M  T  + EPRN  +A+  P   +W+ A + E+  ++ N  ++ VA+P D  +VG K +Y  K   +G+VE++K RLVAQGF Q  GV +TE +SP     S R+LL  A   D  + H D
Sbjct: 1212 PALRRSDRLQHLVPAAEGDAQAMMVTT--VNEPRNPSEALNGPQAKEWQTAMQSEIDNLIQNGTWELVAKPTDTNIVGHKWVYKVKFDSNGEVERFKARLVAQGFSQRYGVDFTETFSPVIRQPSVRILLVIATHLDVPVLHLD 1353          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A7S3Y1L1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1L1_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 2.170e-18
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 0
Query:   22 GGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 147
            G Q+ +  T   Q P N   A  SP W  WR+A   E   ++ + V++ V +P    +VG + +  +K   DG + KYK RL AQG+ QIEGV YT  +SP  S+AS R +L+ AA+ D E+   D
Sbjct:  217 GHQVCLLGTHSEQNPWNLAHAQRSPDWMRWREAVADEYDSLLRHNVWELVDKPSGANIVGCRWILAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMD 342          
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 3.990e-18
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 0
Query:   22 GGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 147
            G Q+ +  T   Q P N   A  SP W  WR+A   E   ++ + V++ V +P    +VG + +  +K   DG + KYK RL AQG+ QIEGV YT  +SP  S+AS R +L+ AA+ D E+   D
Sbjct:  470 GHQVCLLGTHSEQNPWNLAHAQRSPDWMRWREAVADEYDSLLRHNVWELVDKPSGANIVGCRWILAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMD 595          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A060SSE0_PYCCI5.180e-2240.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2JNC7_9BRAS1.160e-2041.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001CB79F243.520e-2041.74hypothetical protein n=1 Tax=Blastococcus sp. CPCC... [more]
A0A1C7MSU6_GRIFR3.730e-2038.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK3.960e-2040.00Integrase catalytic domain-containing protein (Fra... [more]
A0A4Y9XTU1_9APHY2.530e-1936.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2JI50_9BRAS3.530e-1941.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1V9YIL7_9STRA1.200e-1837.50RNA-dependent DNA polymerase n=1 Tax=Achlya hypogy... [more]
A0A7S3Y1L1_HETAK2.170e-1838.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK3.990e-1838.89Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 67..147
e-value: 1.4E-13
score: 51.0
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 44..147
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 44..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118217contigH-elongata_contig118217:44..493 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118217.1406.1mRNA_H-elongata_contig118217.1406.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig118217 44..493 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig118217.1406.1 ID=prot_H-elongata_contig118217.1406.1|Name=mRNA_H-elongata_contig118217.1406.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MHCFLPAIEEADVEDSLACDGGGQMAMHATLDIQEPRNRRQAMESPGWND
WRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYK
CRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like