mRNA_H-elongata_contig64728.14063.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Match: A0A6H5K260_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K260_9PHAE) HSP 1 Score: 164 bits (415), Expect = 8.890e-43 Identity = 130/315 (41.27%), Postives = 151/315 (47.94%), Query Frame = 1
Query: 160 MSLLFDEDYDSHSFYDFERVEEWFREADALVFVGTSFAVTLTSLAIREAKRRHIPVFDFNVSVCLKASPSFDAKTVLGPAEFTLPRLARIARVPVFTDGDGS--------------------------------SGGSVRSTSPSTSSTVEQQHEGEGNHEDDDWPLGRRSRG----------------------------------------------------GSSNDDRDSGDAKVARYSPGGAT-HNGDAAGGPAMH-ATAVAKGEDDTTRAWGGGTKYLLEPVLETPLPKEQVRVDLSEAYSRKSHPDPE 846
MSLLFDEDYDSHSFY+FE+ E+WF+EADA+VFVGTSFAVTLTSLAIREAKRR IPVFDFNVSV LK+SP+ DAKTVLG AE TLP LA A V + T S P + + +G G + GRRS R + AK +S GA + DA G P A A G+ D AWGGG +YLLEP LETPL ++QVRVD++EAYSRK HPDPE
Sbjct: 1 MSLLFDEDYDSHSFYEFEKAEDWFKEADAVVFVGTSFAVTLTSLAIREAKRRGIPVFDFNVSVSLKSSPALDAKTVLGRAEATLPALASAAGVSIATKPTAXXXXXXXXXXXXXXESXXXXXXXXXXXXXXXXISERECPEVGPVAAPGPARGEDGGGVVD------GRRSPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAKRAKCVLHSASGAVIADADAVGEPVTPMARPSAAGDGDM--AWGGGAEYLLEPALETPLRRDQVRVDVAEAYSRKPHPDPE 307
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Match: D8LHN5_ECTSI (Deacetylase sirtuin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN5_ECTSI) HSP 1 Score: 152 bits (383), Expect = 1.530e-41 Identity = 73/98 (74.49%), Postives = 83/98 (84.69%), Query Frame = 1
Query: 1 CPYSYDKEIKPSDFPESMHAAL---EDDAYVAATSGLRRSLTEVPRCPHCGEPSPPMSLLFDEDYDSHSFYDFERVEEWFREADALVFVGTSFAVTLT 285
CPYS+DKEI+P DF ES+ A L +DDA+ AA GL RSLTE+PRCP CGE S PMSLLFDEDYDSHSFYDFE+ E+WF+EADA+VFVGTSFAVTLT
Sbjct: 130 CPYSFDKEIRPEDFTESVRATLTLDDDDAHTAAARGLGRSLTEMPRCPGCGEASSPMSLLFDEDYDSHSFYDFEKAEDWFKEADAVVFVGTSFAVTLT 227
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Match: A0A7S2CWY6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CWY6_9STRA) HSP 1 Score: 128 bits (322), Expect = 6.880e-32 Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 1
Query: 1 CPYSYDKEIKPSDFPESMHAALEDDAYVAATSGLRRSLTEVPRCPHCGEPSPPMSLLFDEDYDSHSFYDFERVEEWFREADALVFVGTSFAVTLTSLAIREAKRRHIPVFDFNVSVCLKASPSFDAKTVLGPAEFTLPRLARI 429
CPYS I P F ++ L + LR +VP CP C P P +LLFDEDY H FY F+R++EW EA+ +VFVGTSFAVTLT+LA+ EA+ RH+P+F+FN+ ++ P+ D + GPAE LP L +
Sbjct: 93 CPYSEHDSIGPGSFSTALQKQLGHNVGKNKLPKLR----QVPLCPSCSNPCMPQALLFDEDYTDHEFYQFDRLQEWLEEAEVVVFVGTSFAVTLTTLAMDEARDRHLPIFNFNIDGEDRSKPTLDWSNIEGPAEVRLPELVAL 231
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Match: A0A7S1GMY1_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMY1_CYCTE) HSP 1 Score: 114 bits (285), Expect = 5.520e-28 Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 106 RSLTEVPRCPHCGEPSPPMSLLFDEDYDSHSFYDFERVEEWFREADALVFVGTSFAVTLTSLAIREAKRRHIPVFDFNVSVCLKASPSFDAKTVLGPAEFTLPRLAR 426
R L + P CPHC P PP +LLFDE Y SH FY FER+EE + +VFVGTSFAV++T +A+ A+ IPV++FN+ L+A+ + + V+GP+ TLPRLA+
Sbjct: 33 RKLEKPPLCPHCLRPCPPQALLFDEGYHSHDFYQFERMEECLSKCAVMVFVGTSFAVSITDVALEHAREHEIPVYNFNICDLLEATARLNVENVVGPSNQTLPRLAK 139
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Match: A0A7S2NYC1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NYC1_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.040e-27 Identity = 71/163 (43.56%), Postives = 91/163 (55.83%), Query Frame = 1
Query: 1 CPYSYDKEIKPSDF-PESMHAALE-----------------DDAYVAATSGLRRSLTEVPRCPHCGEPSPPMSLLFDEDYDSHSFYDFERVEEWFREADALVFVGTSFAVTLTSLAIREAKRRHIPVFDFNVSVCLKASPSFDAKTVLGPAEFTLPRLARIAR 435
C Y K I+PS+ PE + L+ DDA A S R SL E P CP C P P +LLFDE Y SHS Y FE EEW A ALVFVGTSFAVT+T +A+ A+++ +PV++FN+S L+ + A+ VLGPA+ TL L + R
Sbjct: 154 CVYEAMKNIQPSELNPEDVRRVLDPVVAHVGHHPDAPPASSDDAD-ADDSNSRISLKEPPLCPGCSRPCMPQALLFDEGYHSHSHYKFETAEEWIANASALVFVGTSFAVTITDVALEFARKKGVPVYNFNLSDRLEPTSRLHAENVLGPADDTLTSLLALCR 315
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Match: A0A7S0CDM1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDM1_9STRA) HSP 1 Score: 111 bits (277), Expect = 8.200e-27 Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 1
Query: 43 PESMHAALEDDAYVAATSGLRRSLTEVPRCPHCGEPSPPMSLLFDEDYDSHSFYDFERVEEWFREADALVFVGTSFAVTLTSLAIREAKRRHIPVFDFNVSVCLKASPSFDAKTVLGPAEFTLPRL 420
P+S+ +D Y + +++ L P CP+C P PP SLLFDE Y SH Y FE++E W AD +VFVGTSFAVT+T +A+ A+ +IPVF+ N++ L +S + + ++G +E LP+L
Sbjct: 7 PQSIKPLNSNDQY---HTNIQKPLKAPPLCPNCKRPCPPQSLLFDEGYHSHEHYQFEKMESWIENADVMVFVGTSFAVTITDVALEYARNENIPVFNLNLNERLNSSSRLNVENLIGKSEQILPKL 129
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Match: A0A7S1UY41_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UY41_9STRA) HSP 1 Score: 110 bits (276), Expect = 6.510e-25 Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 106 RSLTEVPRCPHCGEPSPPMSLLFDEDYDSHSFYDFERVEEWFREADALVFVGTSFAVTLTSLAIREAKRRHIPVFDFNVSVCLKASPSFDAKTVLGPAEFTLPRLAR 426
R +T P CP C P+ P++LLFDE Y SHS Y F +EEW +AD +VFVGTSFAV LT++A+ K +++ V++FN L SP+ D + VLGPAE TLP L +
Sbjct: 204 RQVTAPPLCPICRTPALPLALLFDEGYHSHSHYAFRDMEEWLSKADVVVFVGTSFAVWLTNVALEHCKAQNLRVYNFNTQDTLPPSPNLDVENVLGPAEETLPALVK 310
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Match: A0A7S4VWY2_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VWY2_9STRA) HSP 1 Score: 107 bits (267), Expect = 7.300e-23 Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 109 SLTEVPRCPHCGEPSPPMSLLFDEDYDSHSFYDFERVEEWFREADALVFVGTSFAVTLTSLAIREAKRRHIPVFDFNVSV-------CLKASPSFDAKTVLGPAEFTLPRL 420
SL+ P CPHC P+PP +LLFDE Y SHS Y F+++E W AD LVFVGTSFAV +T +A+ A+ IPV++FN+ L+ + D + ++G TLPRL
Sbjct: 334 SLSSPPLCPHCLRPAPPQALLFDEGYHSHSHYQFQKMESWISNADILVFVGTSFAVAITDVALEHARNHQIPVYNFNIDSKVGHTGGSLECNSRLDVENIIGDVSDTLPRL 444
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Match: A0A7S1ZC14_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZC14_TRICV) HSP 1 Score: 99.0 bits (245), Expect = 1.430e-22 Identity = 48/101 (47.52%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 142 GEPSPPMSLLFDEDYDSHSFYDFERVEEWFREADALVFVGTSFAVTLTSLAIREAKRRHIPVFDFNVSV---CLKASPSFDAKTVLGPAEFTLPRLARIAR 435
G P+PP +LLFDE Y SH Y F ++E+W AD L+FVGTSF VT+T +A+R A+ +P F+FNV CL+++ +A+ +LG TLPRL R R
Sbjct: 1 GRPAPPQALLFDEGYHSHDHYRFRQMEDWIEGADVLIFVGTSFQVTITDVALRHAREYGVPCFNFNVDPVGGCLESTSRLNAENILGDVSETLPRLWREVR 101
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Match: A0A7S2QVC2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVC2_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.110e-21 Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 139 CGEPSPPMSLLFDEDYDSHSFYDFERVEEWFREADALVFVGTSFAVTLTSLAIREAKRRHIPVFDFNV-SVCLKASPSFDAKTVLGPAEFTLPRLA 423
C P P +L+FDE Y SH FY+F++ WF AD VFVGTSFAVT+T +AI+EA++R IPVF+FN+ S L+ S + + + V+G +E TL L+
Sbjct: 38 CRGPLLPQALMFDESYSSHEFYEFDKFASWFTSADVFVFVGTSFAVTVTDMAIKEARKRKIPVFNFNLESGRLEPSNTLNVENVIGKSEETLVELS 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64728.14063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64728.14063.1 >prot_H-elongata_contig64728.14063.1 ID=prot_H-elongata_contig64728.14063.1|Name=mRNA_H-elongata_contig64728.14063.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp CPYSYDKEIKPSDFPESMHAALEDDAYVAATSGLRRSLTEVPRCPHCGEPback to top mRNA from alignment at H-elongata_contig64728:327..2374- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64728.14063.1 ID=mRNA_H-elongata_contig64728.14063.1|Name=mRNA_H-elongata_contig64728.14063.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2048bp|location=Sequence derived from alignment at H-elongata_contig64728:327..2374- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64728:327..2374- >mRNA_H-elongata_contig64728.14063.1 ID=mRNA_H-elongata_contig64728.14063.1|Name=mRNA_H-elongata_contig64728.14063.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig64728:327..2374- (Himanthalia elongata Himel1 dioecious)back to top |