mRNA_H-elongata_contig64676.14061.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64676.14061.1
Unique NamemRNA_H-elongata_contig64676.14061.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: D8LF43_ECTSI (RPA_interact_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF43_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.830e-42
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 KDDGVLCPLCKRDYLLQVGPLSTSIVCACGFRLGTDGDRLGLENLRQQLAETFEQHSAACNAQPGFHLEGSYGFTILWSSCGGCGFARVVL 273
            +DD VLCP+CKRDYLL  GP S SIVCACGFRL T GDRLGLE+ +QQLA+T+ +HS AC+A+P F +EG+ GF +LWSSC GCGFARVVL
Sbjct:   82 QDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 172
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BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: A0A7M5X5M2_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X5M2_9CNID)

HSP 1 Score: 62.4 bits (150), Expect = 1.570e-9
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:   13 VLCPLCKRDYLLQVGPLSTSIVCACGFRLGTDGDRLGLENLRQQLAETFEQHSAACNAQPGFHLEGSYGFTI--LWSSCGGCGFARVVL 273
            V+CP+C+++ LLQ   +   I C CG R+ T  D + LE +R QL E+  +HS+AC   P FH+    G  I  L  SC  C    +++
Sbjct:  184 VICPVCQKNNLLQNKHI---IFCKCGIRVDTQTDAIDLEYVRNQLQESVNEHSSACQHTPSFHVADLSGVGIENLVLSCQVCDCLSIII 269
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BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: D8R075_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R075_SELML)

HSP 1 Score: 57.0 bits (136), Expect = 1.140e-7
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 KDDGVLCPLCKRDYLLQVGPLSTSIVCACG--FRLGTDGDRL--GLENLRQQLAETFEQH-SAACNAQPGFHLEGSYGFTILWSSCGGCGFARVVL 273
            +++GVLCPLC+R +LL       SI C+      LG+  D+L  G+E +R +LAE  +QH S+ C++QP F  +    F  L+  C  C F  VV+
Sbjct:  142 QENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQHYSSGCSSQPVFTFKDE--FQSLFILCNSCDFFEVVV 232
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BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: UPI000D1C7D68 (uncharacterized protein LOC9653983 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7D68)

HSP 1 Score: 57.0 bits (136), Expect = 1.680e-7
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 KDDGVLCPLCKRDYLLQVGPLSTSIVCACG--FRLGTDGDRL--GLENLRQQLAETFEQH-SAACNAQPGFHLEGSYGFTILWSSCGGCGFARVVL 273
            +++GVLCPLC+R +LL       SI C+      LG+  D+L  G+E +R +LAE  +QH S+ C++QP F  +    F  L+  C  C F  VV+
Sbjct:  213 QENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQHYSSGCSSQPVFTFKDE--FQSLFILCNSCDFFEVVV 303
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BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: A0A2R5L8J5_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5L8J5_9ACAR)

HSP 1 Score: 54.7 bits (130), Expect = 5.500e-7
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    7 DGVLCPLCKRDYLLQVGPLSTSIVCACGFRLGTDGDRLGLENLRQQLAETFEQHSAACNAQPGF 198
            DGVLCP+C R+YL + GP    + C CG  L TD     +E ++Q +++    HS+ C A+P F
Sbjct:  129 DGVLCPVCFRNYLTRSGPF---VACPCGLVLRTDKS---VEGIQQAISDAVASHSSNCTARPLF 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LF43_ECTSI2.830e-4270.33RPA_interact_C domain-containing protein n=1 Tax=E... [more]
A0A7M5X5M2_9CNID1.570e-937.08Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
D8R075_SELML1.140e-738.54Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
UPI000D1C7D681.680e-738.54uncharacterized protein LOC9653983 n=1 Tax=Selagin... [more]
A0A2R5L8J5_9ACAR5.500e-740.63Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64676contigH-elongata_contig64676:2652..3241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.9
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog7739.XP_002598832.1
Preferred nameRPAIN
GOsGO:0001650,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006606,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0015031,GO:0015833,GO:0016604,GO:0016605,GO:0017038,GO:0031974,GO:0031981,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044877,GO:0045184,GO:0046483,GO:0046907,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0090304,GO:1901360,GO:1901576
EggNOG free text desc.protein import into nucleus
EggNOG OGs2C8FC@1,2R0QT@2759,39SXM@33154,3BKGT@33208,3CTDP@33213,481DD@7711
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRPA-interacting protein
Ec32 orthologEc-06_001600.1
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.0202048-CDS-H-elongata_contig64676:2651..27571622931033.0202048-CDS-H-elongata_contig64676:2651..2757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64676 2652..2757 -
1691679670.0348916-CDS-H-elongata_contig64676:2651..27571691679670.0348916-CDS-H-elongata_contig64676:2651..2757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64676 2652..2757 -
1622931033.0658224-CDS-H-elongata_contig64676:3071..32411622931033.0658224-CDS-H-elongata_contig64676:3071..3241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64676 3072..3241 -
1691679670.0552502-CDS-H-elongata_contig64676:3071..32411691679670.0552502-CDS-H-elongata_contig64676:3071..3241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64676 3072..3241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64676.14061.1prot_H-elongata_contig64676.14061.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64676 2652..3241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64676.14061.1

>prot_H-elongata_contig64676.14061.1 ID=prot_H-elongata_contig64676.14061.1|Name=mRNA_H-elongata_contig64676.14061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
KDDGVLCPLCKRDYLLQVGPLSTSIVCACGFRLGTDGDRLGLENLRQQLA
ETFEQHSAACNAQPGFHLEGSYGFTILWSSCGGCGFARVVL*
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mRNA from alignment at H-elongata_contig64676:2652..3241-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64676.14061.1 ID=mRNA_H-elongata_contig64676.14061.1|Name=mRNA_H-elongata_contig64676.14061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=590bp|location=Sequence derived from alignment at H-elongata_contig64676:2652..3241- (Himanthalia elongata Himel1 dioecious)
AAGGACGATGGGGTCCTCTGTCCCCTGTGCAAGCGAGACTACCTGCTGCA
GGTCGGTCCACTCTCGACTTCCATCGTCTGTGCTTGCGGATTCCGCCTCG
GCACGGATGGCGACCGTCTCGGTCTCGAGAACCTCAGGCAGCAGCTGGCA
GAGACGTTTGAACAGCACAGGTGAAAAACGGCCCGACATCGAGCGGAGTG
CTTTTTTTTTTATCGAACCCCCGATTTTTGTTGCAGCGATCCTCACATAA
TATGTAAATATGTACGAATGGTACCGCCACTAGCTTGCTAATTTTATTCA
TTTTTTTCCAGAGCTGGCGCAATGGTTTGGGTATTTTTGTCATAATCCGC
GACTGTCAAACGAATCTAAGCGGAAAACGATGGGAAGATTATTCGAGGTG
CTTCGGGATAAAATACCGATCAAAGTTTTACCTTCCCCGTACCCCCCCCC
CTGTCCGCCAACAACGCCTCTTTCCTTCATACAGCGCTGCGTGCAACGCG
CAACCTGGCTTTCATTTGGAGGGGTCGTATGGGTTTACGATCCTCTGGAG
CTCGTGCGGAGGATGCGGCTTCGCGAGAGTAGTACTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig64676:2652..3241-

>mRNA_H-elongata_contig64676.14061.1 ID=mRNA_H-elongata_contig64676.14061.1|Name=mRNA_H-elongata_contig64676.14061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig64676:2652..3241- (Himanthalia elongata Himel1 dioecious)
AAGGACGATGGGGTCCTCTGTCCCCTGTGCAAGCGAGACTACCTGCTGCA
GGTCGGTCCACTCTCGACTTCCATCGTCTGTGCTTGCGGATTCCGCCTCG
GCACGGATGGCGACCGTCTCGGTCTCGAGAACCTCAGGCAGCAGCTGGCA
GAGACGTTTGAACAGCACAGAAGGACGATGGGGTCCTCTGTCCCCTGTGC
AAGCGAGACTACCTGCTGCAGGTCGGTCCACTCTCGACTTCCATCGTCTG
TGCTTGCGGATTCCGCCTCGGCACGGATGGCGACCGTCTCGGTCTCGAGA
ACCTCAGGCAGCAGCTGGCAGAGACGTTTGAACAGCACAGCGCTGCGTGC
AACGCGCAACCTGGCTTTCATTTGGAGGGGTCGTATGGGTTTACGATCCT
CTGGAGCTCGTGCGGAGGATGCGGCTTCGCGAGAGTAGTACTTTGACGCT
GCGTGCAACGCGCAACCTGGCTTTCATTTGGAGGGGTCGTATGGGTTTAC
GATCCTCTGGAGCTCGTGCGGAGGATGCGGCTTCGCGAGAGTAGTACTTT
GA
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