mRNA_H-elongata_contig64637.14056.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64637.14056.1
Unique NamemRNA_H-elongata_contig64637.14056.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: D8LQ01_ECTSI (Structural maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 3.260e-51
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:   61 SRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYEE 360
            +RLLITK+EMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKL LNK+ ELIHRSDTYPNL++ RVSVHFVDILDV  SED+YEE
Sbjct:   84 ARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLCLNKLGELIHRSDTYPNLDFCRVSVHFVDILDVSGSEDDYEE 183
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BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A835YML7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML7_9STRA)

HSP 1 Score: 179 bits (455), Expect = 7.230e-50
Identity = 88/100 (88.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:   61 SRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYEE 360
            SRLLITKL MENFKSYGG+REIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRS+TYPNL+ A+VSVHFVDI+D ++SED+Y E
Sbjct:   39 SRLLITKLVMENFKSYGGVREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSETYPNLDAAKVSVHFVDIIDDQSSEDDYAE 138
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BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A7S3GXC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXC7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.730e-47
Identity = 75/101 (74.26%), Postives = 90/101 (89.11%), Query Frame = 1 
Query:   55 RTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYE 357
            R +RL+ITK+ +ENFKSY G +EIGPFHK FSSIVGPNGSGKSNVIDA+LFVFGK+AK+LRLNKVSELIH+S TYPNL++ RV+VHF  I D+E S+D+YE
Sbjct:    4 RKARLMITKMVLENFKSYAGCQEIGPFHKRFSSIVGPNGSGKSNVIDALLFVFGKKAKQLRLNKVSELIHKSATYPNLDFTRVAVHFQLIYDIEESDDDYE 104
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BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A813A1Q5_9DINO (SMC4 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A1Q5_9DINO)

HSP 1 Score: 157 bits (398), Expect = 5.780e-47
Identity = 73/97 (75.26%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:   64 RLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNY 354
            RL+IT+LE ENFKSYGG++ IGPFHK FS++VGPNGSGKSNVID MLFVFGKRAKKLRLNK+SELIH+SD YPNL++ARVSV+F DI+D  + +D Y
Sbjct:   10 RLMITRLEFENFKSYGGVKSIGPFHKRFSAVVGPNGSGKSNVIDGMLFVFGKRAKKLRLNKLSELIHKSDQYPNLDFARVSVYFQDIIDTSDEDDGY 106
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BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: F0YFI0_AURAN (Structural maintenance of chromosomes protein 4 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFI0_AURAN)

HSP 1 Score: 169 bits (428), Expect = 3.190e-46
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 1 
Query:   19 MGGSSPMPAIAERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYE 357
            M   S MP     T RL+I K+ +ENFKSYGG REIGPFHK FSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIH+SDTYP+L++A+VSVHF D++D+++  D YE
Sbjct:  833 MDDDSNMPPTTAATPRLMIEKMVLENFKSYGGQREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHKSDTYPDLDWAKVSVHFADVIDLQDGTDAYE 945
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BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: I2CP68_NANGC (Structural maintenance of chromosome 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP68_NANGC)

HSP 1 Score: 155 bits (393), Expect = 2.380e-43
Identity = 77/109 (70.64%), Postives = 92/109 (84.40%), Query Frame = 1 
Query:   25 GSSPMPAIAERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDN 351
            G+ P P    R SRL+I K+ +ENFKSY G++EIGPFHKCFSS+VGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIH+S+ +P+LE A VSVHF +I+D ++  DN
Sbjct:    4 GTEPSPEEGGR-SRLMIVKMVLENFKSYAGIKEIGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHKSEQHPSLESASVSVHFQEIVDRDDLGDN 111
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BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A8J2SP08_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP08_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.890e-43
Identity = 77/95 (81.05%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:   61 SRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSE 345
            SRL+ITK+ +ENFKSYGG+REIGPFHK FSS+VGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRS+ YPNL+ ARVSVHF D+LD + ++
Sbjct:   14 SRLMITKMVLENFKSYGGVREIGPFHKRFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSEQYPNLDSARVSVHFADVLDEDGAD 108
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BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A812TSM6_SYMMI (SMC4 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TSM6_SYMMI)

HSP 1 Score: 155 bits (392), Expect = 1.090e-42
Identity = 75/103 (72.82%), Postives = 93/103 (90.29%), Query Frame = 1 
Query:   49 AERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYE 357
            A++T+RL+IT + +ENFKSY G +EIGPFHK FSSIVGPNGSGKSNVIDA+LFVFGKRAK+LRLNKVSELIHRS  +P+LEYA+V+V+F  I+D E+S+D+YE
Sbjct:    8 ADKTTRLMITSMVLENFKSYAGEQEIGPFHKRFSSIVGPNGSGKSNVIDALLFVFGKRAKQLRLNKVSELIHRSSRFPDLEYAKVAVYFQLIIDDESSQDDYE 110
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BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A485LJE1_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJE1_9STRA)

HSP 1 Score: 157 bits (397), Expect = 4.710e-42
Identity = 79/116 (68.10%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:   28 SSPMPAI-------AERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNY 354
            S+P PA        A+ T RL+I+KLE+ENFKSY G+REIGPFHKCFSS+VGPNGSGKSNVIDA+LFVFGKRAKKLRL+KVSELIH+S  Y NL+ ARVSV F DI+D  + +++Y
Sbjct:   90 STPAPATPRESVAPAKDTPRLMISKLEVENFKSYAGVREIGPFHKCFSSVVGPNGSGKSNVIDALLFVFGKRAKKLRLSKVSELIHKSSNYQNLKEARVSVFFQDIIDTGDGDEDY 205
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BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A662WP66_9STRA (SMC hinge domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WP66_9STRA)

HSP 1 Score: 156 bits (395), Expect = 8.630e-42
Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:   34 PMPAIAERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYE 357
            P PA AE   RL+ITK+++ENFKSY G  EIGPFHKCFS++VGPNGSGKSNVIDA+LFVFGKRA KLRL KVSEL+HRS  +PNL+ A VSV F +I+D+E  ED  E
Sbjct:   41 PTPAKAEPVKRLMITKMQLENFKSYAGKVEIGPFHKCFSAVVGPNGSGKSNVIDALLFVFGKRASKLRLKKVSELVHRSAAFPNLDMATVSVFFQEIIDIEGGEDTAE 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ01_ECTSI3.260e-5189.00Structural maintenance of chromosomes protein n=2 ... [more]
A0A835YML7_9STRA7.230e-5088.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S3GXC7_9STRA1.730e-4774.26Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A813A1Q5_9DINO5.780e-4775.26SMC4 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
F0YFI0_AURAN3.190e-4672.57Structural maintenance of chromosomes protein 4 n=... [more]
I2CP68_NANGC2.380e-4370.64Structural maintenance of chromosome 4 (Fragment) ... [more]
A0A8J2SP08_9STRA2.890e-4381.05Structural maintenance of chromosomes protein n=1 ... [more]
A0A812TSM6_SYMMI1.090e-4272.82SMC4 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A485LJE1_9STRA4.710e-4268.10Structural maintenance of chromosomes protein n=1 ... [more]
A0A662WP66_9STRA8.630e-4269.44SMC hinge domain-containing protein (Fragment) n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64637contigH-elongata_contig64637:1090..1470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.9
Seed ortholog evalue2.3e-44
Seed eggNOG ortholog2880.D8LQ01
Preferred nameSMC4
KEGG koko:K06675
KEGG Pathwayko04111,map04111
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000798,GO:0000799,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0007275,GO:0007399,GO:0007422,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008278,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010032,GO:0010154,GO:0015616,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0030892,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034990,GO:0035639,GO:0036094,GO:0042623,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051716,GO:0061458,GO:0061982,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1990837
EggNOG free text desc.chromosome condensation
EggNOG OGsCOG1196@1,KOG0996@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.4535284-CDS-H-elongata_contig64637:1089..14521622931032.4535284-CDS-H-elongata_contig64637:1089..1452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64637 1090..1452 -
1691679669.7309575-CDS-H-elongata_contig64637:1089..14521691679669.7309575-CDS-H-elongata_contig64637:1089..1452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64637 1090..1452 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.479699-UTR-H-elongata_contig64637:1452..14701622931032.479699-UTR-H-elongata_contig64637:1452..1470Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64637 1453..1470 -
1691679669.7434123-UTR-H-elongata_contig64637:1452..14701691679669.7434123-UTR-H-elongata_contig64637:1452..1470Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64637 1453..1470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64637.14056.1prot_H-elongata_contig64637.14056.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64637 1090..1452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64637.14056.1

>prot_H-elongata_contig64637.14056.1 ID=prot_H-elongata_contig64637.14056.1|Name=mRNA_H-elongata_contig64637.14056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MGGSSPMPAIAERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPN
GSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFV
DILDVENSEDNYEEARKVCA*
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mRNA from alignment at H-elongata_contig64637:1090..1470-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64637.14056.1 ID=mRNA_H-elongata_contig64637.14056.1|Name=mRNA_H-elongata_contig64637.14056.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig64637:1090..1470- (Himanthalia elongata Himel1 dioecious)
GATGCTGCAGACGTGCAGATGGGTGGATCATCGCCGATGCCGGCCATCGC
TGAGCGAACGTCTCGGCTGCTGATCACGAAGTTGGAGATGGAGAACTTCA
AGTCATACGGCGGGTTACGCGAGATCGGTCCCTTCCACAAATGCTTTTCT
TCCATCGTGGGCCCCAATGGGTCGGGAAAATCAAACGTGATCGACGCCAT
GCTATTCGTGTTCGGGAAGAGGGCCAAGAAGCTGCGACTCAACAAGGTCA
GCGAGCTCATCCACCGGTCGGATACCTACCCCAACCTCGAATACGCTCGA
GTTTCGGTGCACTTCGTTGATATCCTGGACGTGGAGAACTCTGAAGACAA
CTACGAAGAGGCGAGAAAAGTATGCGCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig64637:1090..1470-

>mRNA_H-elongata_contig64637.14056.1 ID=mRNA_H-elongata_contig64637.14056.1|Name=mRNA_H-elongata_contig64637.14056.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig64637:1090..1470- (Himanthalia elongata Himel1 dioecious)
ATGGGTGGATCATCGCCGATGCCGGCCATCGCTGAGCGAACGTCTCGGCT
GCTGATCACGAAGTTGGAGATGGAGAACTTCAAGTCATACGGCGGGTTAC
GCGAGATCGGTCCCTTCCACAAATGCTTTTCTTCCATCGTGGGCCCCAAT
GGGTCGGGAAAATCAAACGTGATCGACGCCATGCTATTCGTGTTCGGGAA
GAGGGCCAAGAAGCTGCGACTCAACAAGGTCAGCGAGCTCATCCACCGGT
CGGATACCTACCCCAACCTCGAATACGCTCGAGTTTCGGTGCACTTCGTT
GATATCCTGGACGTGGAGAACTCTGAAGACAACTACGAAGAGGCGAGAAA
AGTATGCGCTTGAATGGGTGGATCATCGCCGATGCCGGCCATCGCTGAGC
GAACGTCTCGGCTGCTGATCACGAAGTTGGAGATGGAGAACTTCAAGTCA
TACGGCGGGTTACGCGAGATCGGTCCCTTCCACAAATGCTTTTCTTCCAT
CGTGGGCCCCAATGGGTCGGGAAAATCAAACGTGATCGACGCCATGCTAT
TCGTGTTCGGGAAGAGGGCCAAGAAGCTGCGACTCAACAAGGTCAGCGAG
CTCATCCACCGGTCGGATACCTACCCCAACCTCGAATACGCTCGAGTTTC
GGTGCACTTCGTTGATATCCTGGACGTGGAGAACTCTGAAGACAACTACG
AAGAGGCGAGAAAAGTATGCGCTTGA
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