mRNA_H-elongata_contig64621.14055.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64621.14055.1
Unique NamemRNA_H-elongata_contig64621.14055.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64621.14055.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 3.620e-9
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 RHHYLKGLQGCSAGLLACVQKAFEDLYILLRSLL 102
            RHHYLKGL+GCSAGLLA VQ AFEDLY LLR+LL
Sbjct: 2482 RHHYLKGLEGCSAGLLARVQGAFEDLYGLLRTLL 2515
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BLAST of mRNA_H-elongata_contig64621.14055.1 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.370e-8
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 RHHYLKGLQGCSAGLLACVQKAFEDLYILLRSLL 102
            RHHYLKGL+GCSAGLLA VQ AFEDLY  LR+LL
Sbjct: 2264 RHHYLKGLEGCSAGLLARVQGAFEDLYGQLRTLL 2297
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64621.14055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVC4_ECTSI3.620e-985.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD94_9PHAE2.370e-882.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64621contigH-elongata_contig64621:151..252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.3968465-CDS-H-elongata_contig64621:150..2521622931032.3968465-CDS-H-elongata_contig64621:150..252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64621 151..252 -
1691679669.7184806-CDS-H-elongata_contig64621:150..2521691679669.7184806-CDS-H-elongata_contig64621:150..252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64621 151..252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64621.14055.1prot_H-elongata_contig64621.14055.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64621 151..252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64621.14055.1

>prot_H-elongata_contig64621.14055.1 ID=prot_H-elongata_contig64621.14055.1|Name=mRNA_H-elongata_contig64621.14055.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=34bp
RHHYLKGLQGCSAGLLACVQKAFEDLYILLRSLL
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mRNA from alignment at H-elongata_contig64621:151..252-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64621.14055.1 ID=mRNA_H-elongata_contig64621.14055.1|Name=mRNA_H-elongata_contig64621.14055.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at H-elongata_contig64621:151..252- (Himanthalia elongata Himel1 dioecious)
CGGCATCACTATCTCAAGGGACTCCAAGGGTGCTCCGCTGGACTGTTAGC
TTGCGTACAAAAGGCGTTCGAAGATCTGTATATCCTACTACGGTCTTTGC
TC
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Coding sequence (CDS) from alignment at H-elongata_contig64621:151..252-

>mRNA_H-elongata_contig64621.14055.1 ID=mRNA_H-elongata_contig64621.14055.1|Name=mRNA_H-elongata_contig64621.14055.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at H-elongata_contig64621:151..252- (Himanthalia elongata Himel1 dioecious)
CGGCATCACTATCTCAAGGGACTCCAAGGGTGCTCCGCTGGACTGTTAGC
TTGCGTACAAAAGGCGTTCGAAGATCTGTATATCCTACTACGGTCTTTGC
TCCGGCATCACTATCTCAAGGGACTCCAAGGGTGCTCCGCTGGACTGTTA
GCTTGCGTACAAAAGGCGTTCGAAGATCTGTATATCCTACTACGGTCTTT
GCTC
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