mRNA_H-elongata_contig6458.14051.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6458.14051.1
Unique NamemRNA_H-elongata_contig6458.14051.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Match: D7FK77_ECTSI (Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK77_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.980e-26
Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   79 SVEVDTFCPRAGNKGVSVCAGRDVKLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETGTSAE 285
            + EVD  CP+AGNKGVSV AG D KLNQTNI+ NNNKFYILQMC+DA R N+FVW RWGRVGE G  AE
Sbjct:  443 NAEVDKCCPKAGNKGVSVHAGHDAKLNQTNIANNNNKFYILQMCRDAGRNNYFVWCRWGRVGELGAMAE 511          
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Match: UPI001A9AFEAD (LOW QUALITY PROTEIN: protein mono-ADP-ribosyltransferase PARP3 n=1 Tax=Oryx dammah TaxID=59534 RepID=UPI001A9AFEAD)

HSP 1 Score: 75.5 bits (184), Expect = 6.950e-14
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   67 PARQSV-EVDTFCPRAGNKGVSVCAGRDVKLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETGTS 279
            PA + + +VD  CP +G  G  V    D  LNQTNI +NNNKFYI+Q+ ++A R  +F WTRWGRVGE G S
Sbjct:   39 PAEKCIAQVDPSCPLSGKPGTQVHEDYDCTLNQTNIESNNNKFYIIQLLEEADR--FFCWTRWGRVGEVGQS 108          
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Match: H0VPR1_CAVPO (Poly [ADP-ribose] polymerase n=3 Tax=Cavia porcellus TaxID=10141 RepID=H0VPR1_CAVPO)

HSP 1 Score: 73.2 bits (178), Expect = 4.520e-13
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   64 PPARQSVEVDTFCPRAGNKGVSVCAGRDVKLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETGTS 279
            P  ++ + VD  CP   N G+ V    D  LNQTNIS NNNKFY++Q+ +D    ++F W RWGRVGE G S
Sbjct:   40 PTEKRIICVDPNCPLINNPGIQVHEDYDCTLNQTNISNNNNKFYVIQLLEDG--SHFFCWNRWGRVGEVGRS 109          
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Match: A0A1S8VUS1_9FUNG (Poly [ADP-ribose] polymerase n=3 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VUS1_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 8.640e-13
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   88 VDTFCPRAGNKGVSVCAGR--DVKLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETG 273
            VD  CP+AG+  V        D  LNQTNISANNNKFYILQ+ ++    N+FVW RWGRVG  G
Sbjct:  248 VDHNCPKAGSTHVVEMGDEIFDAMLNQTNISANNNKFYILQLLKEDTSSNYFVWKRWGRVGMVG 311          
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Match: A0A852MAD2_9AVES (Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Centropus bengalensis TaxID=1463675 RepID=A0A852MAD2_9AVES)

HSP 1 Score: 71.2 bits (173), Expect = 2.100e-12
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   49 APAQVPPARQSVEVDTFCPRAGNKGVSVCAGRDVKLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETGTS 279
            AP + PP      +D  CP +G  G  V    D  LNQTNISANNNKFYI+Q+ +     ++ VW RWGRVGE G S
Sbjct:   39 APKEKPPPT----IDGLCPLSGEPGARVYEDYDCTLNQTNISANNNKFYIIQLLEHD--GSYSVWNRWGRVGEVGQS 109          
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Match: A0A7L0E5A6_TROML (Poly [ADP-ribose] polymerase (Fragment) n=3 Tax=Trogonidae TaxID=56309 RepID=A0A7L0E5A6_TROML)

HSP 1 Score: 71.2 bits (173), Expect = 2.140e-12
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   49 APAQVPPARQSVEVDTFCPRAGNKGVSVCAGRDVKLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETGTS 279
            AP + PP      VD  CP +   G+ V    D  LNQTNISANNNKFYI+Q+ +     N  VW+RWGRVGE G S
Sbjct:   39 APKEKPPPT----VDGLCPLSTTPGIQVYEDYDCTLNQTNISANNNKFYIIQLLEHDGAYN--VWSRWGRVGEVGQS 109          
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Match: A0A7K7J622_LOXCU (Poly [ADP-ribose] polymerase (Fragment) n=4 Tax=Passeriformes TaxID=9126 RepID=A0A7K7J622_LOXCU)

HSP 1 Score: 71.2 bits (173), Expect = 2.140e-12
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   49 APAQVPPARQSVEVDTFCPRAGNKGVSVCAGRDVKLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETGTS 279
            AP + PPA+    +D  CP +   G  V    D  LNQTNISANNNKFYI+Q+ +     +  VW+RWGRVGE G S
Sbjct:   39 APTEKPPAK----IDALCPLSSALGARVYEDYDCTLNQTNISANNNKFYIIQLLEHDGAYS--VWSRWGRVGEAGQS 109          
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Match: A0A7L4DVI2_9AVES (Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Eurystomus gularis TaxID=325343 RepID=A0A7L4DVI2_9AVES)

HSP 1 Score: 70.5 bits (171), Expect = 3.780e-12
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   49 APAQVPPARQSVEVDTFCPRAGNKGVSVCAGRDVKLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETGTS 279
            AP + PPA     +D  CP +   G  V    D  LNQTNISANNNKFYI+Q+ +     +  VWTRWGRVGE G S
Sbjct:   37 APKEKPPAT----IDGLCPLSTAPGAQVYEDYDCTLNQTNISANNNKFYIIQLLEHDGAYS--VWTRWGRVGEVGQS 107          
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Match: A0A2N3NFX7_9PEZI (Poly [ADP-ribose] polymerase n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3NFX7_9PEZI)

HSP 1 Score: 70.1 bits (170), Expect = 5.600e-12
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   82 VEVDTFCPRAGNKGVSVCAGRD-----VKLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETGTSA 282
            V VD F   +G +G  V    D       LNQTN S NNNKFY +Q+  D+ +K++F WTRWGRVGETG  A
Sbjct:  213 VPVDEFFHLSGKQGFVVYIDDDGVIYDASLNQTNASNNNNKFYKVQVVMDSAKKDYFAWTRWGRVGETGQKA 284          
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Match: A0A8C2P6V9_CAPHI (Poly [ADP-ribose] polymerase n=4 Tax=Bovidae TaxID=9895 RepID=A0A8C2P6V9_CAPHI)

HSP 1 Score: 69.7 bits (169), Expect = 7.460e-12
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   61 VPPARQSVEVDTFCPRAGNKGVSVCAGRDVKLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETGTS 279
            VP  +    VD  CP + N G  V    D  LNQTNI +NNNKFYI+Q+ ++A    +F WTRWG VGE G S
Sbjct:   38 VPAEKFIARVDPSCPLSCNPGTQVHEDHDCTLNQTNIGSNNNKFYIIQLLEEA--GCFFCWTRWGCVGEVGQS 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6458.14051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK77_ECTSI4.980e-2673.91Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus Ta... [more]
UPI001A9AFEAD6.950e-1452.78LOW QUALITY PROTEIN: protein mono-ADP-ribosyltrans... [more]
H0VPR1_CAVPO4.520e-1348.61Poly [ADP-ribose] polymerase n=3 Tax=Cavia porcell... [more]
A0A1S8VUS1_9FUNG8.640e-1356.25Poly [ADP-ribose] polymerase n=3 Tax=Batrachochytr... [more]
A0A852MAD2_9AVES2.100e-1249.35Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Ce... [more]
A0A7L0E5A6_TROML2.140e-1250.65Poly [ADP-ribose] polymerase (Fragment) n=3 Tax=Tr... [more]
A0A7K7J622_LOXCU2.140e-1249.35Poly [ADP-ribose] polymerase (Fragment) n=4 Tax=Pa... [more]
A0A7L4DVI2_9AVES3.780e-1250.65Poly [ADP-ribose] polymerase (Fragment) n=1 Tax=Eu... [more]
A0A2N3NFX7_9PEZI5.600e-1250.00Poly [ADP-ribose] polymerase n=1 Tax=Lomentospora ... [more]
A0A8C2P6V9_CAPHI7.460e-1249.32Poly [ADP-ribose] polymerase n=4 Tax=Bovidae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6458contigH-elongata_contig6458:5137..5903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue7.2e-22
Seed eggNOG ortholog2880.D7FK77
Preferred namePARP3
KEGG koko:K10798
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
GOsGO:0000723,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0003950,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006464,GO:0006471,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0015630,GO:0016043,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016886,GO:0019219,GO:0019222,GO:0019538,GO:0022616,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0032200,GO:0032886,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0035861,GO:0036211,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051103,GO:0051105,GO:0051106,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051338,GO:0051348,GO:0051493,GO:0051641,GO:0051716,GO:0051726,GO:0051972,GO:0051974,GO:0060236,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090224,GO:0090304,GO:0090734,GO:0140097,GO:1901360,GO:1901564,GO:1901576,GO:1905661,GO:1905662,GO:1990166,GO:2000112,GO:2000113,GO:2000278,GO:2000279
EggNOG free text desc.NAD ADP-ribosyltransferase activity
EggNOG OGsKOG1037@1,KOG1037@2759
EC2.4.2.30
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.113349-CDS-H-elongata_contig6458:5136..53401622931032.113349-CDS-H-elongata_contig6458:5136..5340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6458 5137..5340 +
1691679669.5924904-CDS-H-elongata_contig6458:5136..53401691679669.5924904-CDS-H-elongata_contig6458:5136..5340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6458 5137..5340 +
1622931032.13033-CDS-H-elongata_contig6458:5822..59031622931032.13033-CDS-H-elongata_contig6458:5822..5903Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6458 5823..5903 +
1691679669.6046479-CDS-H-elongata_contig6458:5822..59031691679669.6046479-CDS-H-elongata_contig6458:5822..5903Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6458 5823..5903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6458.14051.1prot_H-elongata_contig6458.14051.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6458 5137..5903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6458.14051.1

>prot_H-elongata_contig6458.14051.1 ID=prot_H-elongata_contig6458.14051.1|Name=mRNA_H-elongata_contig6458.14051.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
AGKGKGKVSAAGAGTGAPAQVPPARQSVEVDTFCPRAGNKGVSVCAGRDV
KLNQTNISANNNKFYILQMCQDAVRKNWFVWTRWGRVGETGTSAE
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mRNA from alignment at H-elongata_contig6458:5137..5903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6458.14051.1 ID=mRNA_H-elongata_contig6458.14051.1|Name=mRNA_H-elongata_contig6458.14051.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=767bp|location=Sequence derived from alignment at H-elongata_contig6458:5137..5903+ (Himanthalia elongata Himel1 dioecious)
GCGGGTAAGGGGAAAGGGAAGGTCTCTGCCGCTGGGGCCGGGACCGGGGC ACCCGCCCAGGTCCCTCCCGCACGGCAGTCGGTGGAGGTCGACACGTTTT GCCCCAGGGCCGGGAATAAGGGCGTGTCCGTGTGTGCAGGTCGCGATGTG AAGCTGAACCAGACCAACATATCCGCCAACAACAACAAATTCTACATCCT TCAGGTGGAATATGCAGCAACAGCATGCAGCACACCAGACCAGGAAACGT CCGTAAACCGTGCGTGTGTTTTCATATTCCGTGGAGGCTTTGTGCGATTG TAATTATCGGGTTTGCGTGCGTTTGGGATATATGAGAACTGCCTTCCCTC TACCCCTTTGAGATCCTGCGCGGATCCCTTAGGCCATCGGTTTCTTACAG GAGCTTGGGCGAATACAGTTGAGGTTTGTGAAAGGAGACAGGAAGCATAT GGAAGTGTCACCCAACATGTCACATTTTTGCGCAAATGGGGAGAACCTTA CTCAGGCCGCCATATTTCCCCCGCGTCACACGAGGAAAGCCATGGCTCCC AGAAGACAGCGTTTCGTTTGTCCGCGCGAGGACTCGGAGAGGAAGACATG TAAACTGCGTATTGCATTTCGACCTCGTGCTCTGATGTTTTTTTTCCACC CCCTCTCTGAACGGTGGGGATATTGAGGGTATTCAGATGTGCCAAGACGC GGTTCGCAAGAATTGGTTCGTTTGGACGCGGTGGGGCCGCGTGGGAGAGA CGGGAACCTCCGCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig6458:5137..5903+

>mRNA_H-elongata_contig6458.14051.1 ID=mRNA_H-elongata_contig6458.14051.1|Name=mRNA_H-elongata_contig6458.14051.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig6458:5137..5903+ (Himanthalia elongata Himel1 dioecious)
GCGGGTAAGGGGAAAGGGAAGGTCTCTGCCGCTGGGGCCGGGACCGGGGC
ACCCGCCCAGGTCCCTCCCGCACGGCAGTCGGTGGAGGTCGACACGTTTT
GCCCCAGGGCCGGGAATAAGGGCGTGTCCGTGTGTGCAGGTCGCGATGTG
AAGCTGAACCAGACCAACATATCCGCCAACAACAACAAATTCTACATCCT
TCAGGCGGGTAAGGGGAAAGGGAAGGTCTCTGCCGCTGGGGCCGGGACCG
GGGCACCCGCCCAGGTCCCTCCCGCACGGCAGTCGGTGGAGGTCGACACG
TTTTGCCCCAGGGCCGGGAATAAGGGCGTGTCCGTGTGTGCAGGTCGCGA
TGTGAAGCTGAACCAGACCAACATATCCGCCAACAACAACAAATTCTACA
TCCTTCAGATGTGCCAAGACGCGGTTCGCAAGAATTGGTTCGTTTGGACG
CGGTGGGGCCGCGTGGGAGAGACGGGAACCTCCGCCGAGATGTGCCAAGA
CGCGGTTCGCAAGAATTGGTTCGTTTGGACGCGGTGGGGCCGCGTGGGAG
AGACGGGAACCTCCGCCGAG
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