mRNA_H-elongata_contig6457.14047.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6457.14047.1
Unique NamemRNA_H-elongata_contig6457.14047.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6457.14047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6457contigH-elongata_contig6457:8364..8928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size566
Cds size501
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.913664-UTR-H-elongata_contig6457:8363..84271622931031.913664-UTR-H-elongata_contig6457:8363..8427Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6457 8364..8427 +
1691679669.5193706-UTR-H-elongata_contig6457:8363..84271691679669.5193706-UTR-H-elongata_contig6457:8363..8427Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6457 8364..8427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.9255466-CDS-H-elongata_contig6457:8427..89281622931031.9255466-CDS-H-elongata_contig6457:8427..8928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6457 8428..8928 +
1691679669.5326273-CDS-H-elongata_contig6457:8427..89281691679669.5326273-CDS-H-elongata_contig6457:8427..8928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6457 8428..8928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6457.14047.1prot_H-elongata_contig6457.14047.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6457 8428..8928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6457.14047.1

>prot_H-elongata_contig6457.14047.1 ID=prot_H-elongata_contig6457.14047.1|Name=mRNA_H-elongata_contig6457.14047.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
MHKISACFGSKIRQFLSPLETDIFLRGMESEAEAKKALRAEAKEAAAVTA
ERAENTAWENQVAHEMAEASGSYGFPATLAAGAVDLPRASTSGVEAETVS
ILAAATGPGGNVSLNVSIGGAAGTPSTATGAPRGTAAEETVTGIGYAEET
GSGVILESSDSSPCDIS
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mRNA from alignment at H-elongata_contig6457:8364..8928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6457.14047.1 ID=mRNA_H-elongata_contig6457.14047.1|Name=mRNA_H-elongata_contig6457.14047.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=565bp|location=Sequence derived from alignment at H-elongata_contig6457:8364..8928+ (Himanthalia elongata Himel1 dioecious)
GTGGAGCAGTGCACCCTGTCAAGTCGGCTTGAACGACACGTGGGCTATTG
ACTAGGAGGGCACAATGCACAAAATTTCTGCATGCTTCGGCAGCAAGATC
AGACAGTTTTTGTCTCCGCTTGAGACAGATATTTTCCTTAGAGGAATGGA
GTCGGAGGCCGAAGCAAAGAAAGCTTTGCGTGCGGAAGCGAAAGAAGCAG
CAGCAGTCACAGCCGAACGTGCGGAAAATACCGCGTGGGAAAATCAAGTC
GCACATGAGATGGCTGAAGCTTCCGGAAGTTATGGTTTCCCCGCTACGTT
GGCGGCTGGGGCTGTCGATTTACCAAGGGCGTCCACCAGCGGAGTTGAAG
CGGAGACGGTATCGATACTTGCGGCAGCCACTGGGCCCGGCGGTAATGTT
TCCCTCAATGTATCAATTGGGGGGGCGGCCGGTACGCCCTCGACAGCCAC
GGGAGCACCAAGAGGGACAGCGGCGGAGGAAACTGTCACCGGCATTGGAT
ATGCGGAGGAAACAGGGTCCGGGGTGATTCTGGAATCCAGCGACAGCAGC
CCGTGCGACATCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig6457:8364..8928+

>mRNA_H-elongata_contig6457.14047.1 ID=mRNA_H-elongata_contig6457.14047.1|Name=mRNA_H-elongata_contig6457.14047.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig6457:8364..8928+ (Himanthalia elongata Himel1 dioecious)
ATGCACAAAATTTCTGCATGCTTCGGCAGCAAGATCAGACAGTTTTTGTC
TCCGCTTGAGACAGATATTTTCCTTAGAGGAATGGAGTCGGAGGCCGAAG
CAAAGAAAGCTTTGCGTGCGGAAGCGAAAGAAGCAGCAGCAGTCACAGCC
GAACGTGCGGAAAATACCGCGTGGGAAAATCAAGTCGCACATGAGATGGC
TGAAGCTTCCGGAAGTTATGGTTTCCCCGCTACGTTGGCGGCTGGGGCTG
TCGATTTACCAAGGGCGTCCACCAGCGGAGTTGAAGCGGAGACGGTATCG
ATACTTGCGGCAGCCACTGGGCCCGGCGGTAATGTTTCCCTCAATGTATC
AATTGGGGGGGCGGCCGGTACGCCCTCGACAGCCACGGGAGCACCAAGAG
GGACAGCGGCGGAGGAAACTGTCACCGGCATTGGATATGCGGAGGAAACA
GGGTCCGGGGTGATTCTGGAATCCAGCGACAGCAGCCCGTGCGACATCAG
CATGCACAAAATTTCTGCATGCTTCGGCAGCAAGATCAGACAGTTTTTGT
CTCCGCTTGAGACAGATATTTTCCTTAGAGGAATGGAGTCGGAGGCCGAA
GCAAAGAAAGCTTTGCGTGCGGAAGCGAAAGAAGCAGCAGCAGTCACAGC
CGAACGTGCGGAAAATACCGCGTGGGAAAATCAAGTCGCACATGAGATGG
CTGAAGCTTCCGGAAGTTATGGTTTCCCCGCTACGTTGGCGGCTGGGGCT
GTCGATTTACCAAGGGCGTCCACCAGCGGAGTTGAAGCGGAGACGGTATC
GATACTTGCGGCAGCCACTGGGCCCGGCGGTAATGTTTCCCTCAATGTAT
CAATTGGGGGGGCGGCCGGTACGCCCTCGACAGCCACGGGAGCACCAAGA
GGGACAGCGGCGGAGGAAACTGTCACCGGCATTGGATATGCGGAGGAAAC
AGGGTCCGGGGTGATTCTGGAATCCAGCGACAGCAGCCCGTGCGACATCA
GC
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