mRNA_H-elongata_contig64550.14044.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64550.14044.1
Unique NamemRNA_H-elongata_contig64550.14044.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Match: R1DAT8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DAT8_EMIHU)

HSP 1 Score: 73.2 bits (178), Expect = 2.770e-13
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 LSYLLRTVPPSITCQAAENYDALVEWALASIIDGDGAAAAGLPTPEKALRQAHLPIREGGLGLTSSSSIRGPIYIGCHALVLG 249
            L++ LR +PPS+T  AAE +D L++ AL  ++ G    AAG    E+A +QA LP++ GG+GLTS+  IR P +IG  ALV G
Sbjct:  247 LTFFLRAMPPSVTLPAAERHDELIDAALYKLVGGARVGAAGTRW-ERACKQARLPVKMGGMGLTSAVDIREPAWIGTWALVAG 328
[Close]
BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.690e-12
Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:    1 LSYLLRTVPPSITCQAAENYDALVEWALASIIDGDGAAAAGLPT-------PEK---------ALRQAHLPIREGGLGLTSSSSIRGPIYIGCHALV 243
            L +LLRT+ PSIT  AA  +D+L+ WA++ I+ G  A   G+PT       PEK         A  Q HLPIREGGLG+TSS  IR   ++   ALV
Sbjct:  328 LFHLLRTIAPSITNTAAREHDSLMIWAVSKIVLGKMANTVGIPTVEEVPANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALV 424
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BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.710e-12
Identity = 44/97 (45.36%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:    1 LSYLLRTVPPSITCQAAENYDALVEWALASIIDGDGAAAAGLPT-------PEK---------ALRQAHLPIREGGLGLTSSSSIRGPIYIGCHALV 243
            L +LLRT+ PSIT  AA  +D L+ WA++ I+ G  A   G+PT       PEK         A  Q HLPIREGGLG+TSS  IR   ++   ALV
Sbjct:  179 LFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALV 275
[Close]
BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.210e-11
Identity = 44/97 (45.36%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:    1 LSYLLRTVPPSITCQAAENYDALVEWALASIIDGDGAAAAGLPT-------PEK---------ALRQAHLPIREGGLGLTSSSSIRGPIYIGCHALV 243
            L +LLRT+ PSIT  AA  +D L+ WA++ I+ G  A   G+PT       PEK         A  Q HLPIREGGLG+TSS  IR   ++   ALV
Sbjct:  480 LFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAFVAGQALV 576
[Close]
BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 67.4 bits (163), Expect = 3.210e-11
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:    1 LSYLLRTVPPSITCQAAENYDALVEWALASIIDGD---GAAAAGLPTPEKA------------LRQAHLPIREGGLGLTSSSSIRGPIYIGCHALVL 246
            L++LLR++PP +T +AA  +D  VE  L +I++G    G  A   PT E +            +RQA LP+REGGLG+ S+  I GP +IG  ALVL
Sbjct: 1515 LNFLLRSLPPDLTKEAASEFDKSVEQTLETILNGPSQPGEHAPHEPTEENSPSLPRLNLSPVGIRQARLPVREGGLGIPSTVDISGPAFIGGQALVL 1611
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BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Match: A0A0D3IVF4_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A0D3IVF4_EMIHU)

HSP 1 Score: 64.3 bits (155), Expect = 3.650e-10
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LSYLLRTVPPSITCQAAENYDALVEWALASIIDGDGAAAAGLPTPE--KALRQAHLPIREGGLGLTSSSSIRGPIYIGCHALV 243
            L++ LRT+PPS+T  AA  +D L+E AL +++ G   A  G  +P    A++QA LP+R GG+GLTS+  IR   ++G  ALV
Sbjct:  216 LTFFLRTMPPSVTQDAAREHDRLMEEALYTLVGG---ARVGRNSPRWRVAVQQARLPVRMGGMGLTSAMDIREAAWVGTWALV 295
[Close]
BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Match: A0A0D3JPK8_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A0D3JPK8_EMIHU)

HSP 1 Score: 64.3 bits (155), Expect = 3.780e-10
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LSYLLRTVPPSITCQAAENYDALVEWALASIIDGDGAAAAGLPTPE--KALRQAHLPIREGGLGLTSSSSIRGPIYIGCHALV 243
            L++ LRT+PPS+T  AA  +D L+E AL +++ G   A  G  +P    A++QA LP+R GG+GLTS+  IR   ++G  ALV
Sbjct:  507 LTFFLRTMPPSVTQDAAREHDRLMEEALYTLVGG---ARVGRNSPRWRVAVQQARLPVRMGGMGLTSAMDIREAAWVGTWALV 586
[Close]
BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Match: A0A7S3WKE0_EMIHU (Hypothetical protein (Fragment) n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WKE0_EMIHU)

HSP 1 Score: 64.3 bits (155), Expect = 3.820e-10
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 LSYLLRTVPPSITCQAAENYDALVEWALASIIDGDGAAAAGLPTPE--KALRQAHLPIREGGLGLTSSSSIRGPIYIGCHALV 243
            L++ LRT+PPS+T  AA  +D L+E AL +++ G   A  G  +P    A++QA LP+R GG+GLTS+  IR   ++G  ALV
Sbjct:  515 LTFFLRTMPPSVTQDAAREHDRLMEEALYTLVGG---ARVGRNSPRWRVAVQQARLPVRMGGMGLTSAMDIREAAWVGTWALV 594
[Close]
BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Match: R1D8Y1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D8Y1_EMIHU)

HSP 1 Score: 58.5 bits (140), Expect = 4.040e-8
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 LSYLLRTVPPSITCQAAENYDALVEWALASIIDGDGAAAAGLPTPE--KALRQAHLPIREGGLGLTSSSSIRGPIYI 225
            L++ LRT+PPS+T  AA  +D L+E AL +++ G   A  G  +P    A++QA LP+R GG+GLTS+  IR   ++
Sbjct:   83 LTFFLRTMPPSVTQDAAREHDRLMEEALYTLVGG---ARVGRNSPRWRVAVQQARLPVRMGGMGLTSAMDIREAAWV 156
[Close]
BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Match: A0A813A4A6_SYMMI (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813A4A6_SYMMI)

HSP 1 Score: 52.4 bits (124), Expect = 4.780e-6
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:    4 SYLLRTVPPSITCQAAENYDALVEWALASIIDGDGAAAAGLPTPEKALRQAHLPIREGGLGLTSSSSIRGPIYIGCHALVLG 249
            +YLLRTVPPS+T   A ++DA +   LA ++ G       L  P  + R+A LP+R GGLGL+S+   R   Y    A  +G
Sbjct:  139 NYLLRTVPPSLTEDFAASHDAAISRCLAVLLAGGEEP---LDLPSLSERRAQLPLRMGGLGLSSAREHRQAAYWASWADTVG 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64550.14044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
R1DAT8_EMIHU2.770e-1346.99Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A6H5KSY9_9PHAE4.690e-1245.36Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K541_9PHAE6.710e-1245.36Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGJ4_9PHAE1.210e-1145.36Reverse transcriptase domain-containing protein n=... [more]
A0A6P0N5L4_9CYAN3.210e-1142.27Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A0D3IVF4_EMIHU3.650e-1044.58Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A0D3JPK8_EMIHU3.780e-1044.58Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S3WKE0_EMIHU3.820e-1044.58Hypothetical protein (Fragment) n=3 Tax=Emiliania ... [more]
R1D8Y1_EMIHU4.040e-842.86Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A813A4A6_SYMMI4.780e-640.24Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64550contigH-elongata_contig64550:2788..3087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue2.9e-11
Seed eggNOG ortholog2903.EOD07991
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2EPMD@1,2SST1@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.583849-CDS-H-elongata_contig64550:2787..28951622931031.583849-CDS-H-elongata_contig64550:2787..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64550 2788..2895 -
1691679669.3718095-CDS-H-elongata_contig64550:2787..28951691679669.3718095-CDS-H-elongata_contig64550:2787..2895Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64550 2788..2895 -
1622931031.5971231-CDS-H-elongata_contig64550:2946..30871622931031.5971231-CDS-H-elongata_contig64550:2946..3087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64550 2947..3087 -
1691679669.3827446-CDS-H-elongata_contig64550:2946..30871691679669.3827446-CDS-H-elongata_contig64550:2946..3087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64550 2947..3087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64550.14044.1prot_H-elongata_contig64550.14044.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64550 2788..3087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64550.14044.1

>prot_H-elongata_contig64550.14044.1 ID=prot_H-elongata_contig64550.14044.1|Name=mRNA_H-elongata_contig64550.14044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
LSYLLRTVPPSITCQAAENYDALVEWALASIIDGDGAAAAGLPTPEKALR
QAHLPIREGGLGLTSSSSIRGPIYIGCHALVLG
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mRNA from alignment at H-elongata_contig64550:2788..3087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64550.14044.1 ID=mRNA_H-elongata_contig64550.14044.1|Name=mRNA_H-elongata_contig64550.14044.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig64550:2788..3087- (Himanthalia elongata Himel1 dioecious)
CTCTCATATCTCCTTCGAACAGTCCCGCCCTCCATCACGTGCCAAGCTGC
AGAAAATTATGACGCCTTGGTGGAGTGGGCATTGGCGTCCATCATAGATG
GTGACGGAGCTGCCGCGGCAGGGCTACCAACGCCAGAGAAAGTAGCCTAC
GATCCCACTGTGTTCGAAAATCAGACCTATCTCGGCCATGAGGCCCTACG
GCAGGCCCACCTGCCAATCCGAGAAGGCGGCCTTGGGCTTACCAGCAGCA
GCTCCATCAGAGGCCCGATATATATCGGCTGCCACGCCCTGGTCCTGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig64550:2788..3087-

>mRNA_H-elongata_contig64550.14044.1 ID=mRNA_H-elongata_contig64550.14044.1|Name=mRNA_H-elongata_contig64550.14044.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig64550:2788..3087- (Himanthalia elongata Himel1 dioecious)
CTCTCATATCTCCTTCGAACAGTCCCGCCCTCCATCACGTGCCAAGCTGC
AGAAAATTATGACGCCTTGGTGGAGTGGGCATTGGCGTCCATCATAGATG
GTGACGGAGCTGCCGCGGCAGGGCTACCAACGCCAGAGAAACTCTCATAT
CTCCTTCGAACAGTCCCGCCCTCCATCACGTGCCAAGCTGCAGAAAATTA
TGACGCCTTGGTGGAGTGGGCATTGGCGTCCATCATAGATGGTGACGGAG
CTGCCGCGGCAGGGCTACCAACGCCAGAGAAAGCCCTACGGCAGGCCCAC
CTGCCAATCCGAGAAGGCGGCCTTGGGCTTACCAGCAGCAGCTCCATCAG
AGGCCCGATATATATCGGCTGCCACGCCCTGGTCCTGGGGGCCCTACGGC
AGGCCCACCTGCCAATCCGAGAAGGCGGCCTTGGGCTTACCAGCAGCAGC
TCCATCAGAGGCCCGATATATATCGGCTGCCACGCCCTGGTCCTGGGG
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