mRNA_H-elongata_contig64542.14042.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64542.14042.1
Unique NamemRNA_H-elongata_contig64542.14042.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64542.14042.1 vs. uniprot
Match: D8LKQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ3_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 3.370e-25
Identity = 104/305 (34.10%), Postives = 134/305 (43.93%), Query Frame = 1 
Query:  313 DDGELPPCLLGVFDSFFGG------------RSKNG-----------------APPAPRSPSTMTGVSVGVGRAAFAQLHIRDLNDIKNLSGARIVAPDSPESFGNISEDVMANVSAI-SRVARGNAPVEGFGLAVSNIEVNQATAAGATGASSSPVDPMSSAL-----------------SKPAEHFGRETDELYGMSRLSLDHSYRFVGTAADAMQRESAMGSRLILKHRHPFGGAAAGHGENMLEAVTMPQGFGDKGGDVEGRIAYRSPLKMVRITGTAEEVQLAEYLIRVRTAVLDTEAAS 1086
            DDGELP CL+G+ DSF GG            RS +G                 A P  RSPST+TG+ + VGR+AFA+L  R L+DIK+LSGA I AP+SPE + ++S++  A + A+ S  ARGNAP +G GLA +N                                           S P E F         MS  +         T   A+   +   SRL+L   +       G   ++  AV    G            A  + LK V+ITGTAEEVQLAEYLIRV T   +  AAS
Sbjct:  123 DDGELPSCLVGILDSFLGGGGKSYVSDGNSIRSGSGGXXXXXXXXXXXXXXXXAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYYHLSDEAAAAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSPFEGFRLREGVRGNMSDGAA--------TTPGAIAAVTGGVSRLVLDTTNSXXXXXNGVSPSLASAVGHVSGGLAXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVSTTGGNMAAAS 419
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BLAST of mRNA_H-elongata_contig64542.14042.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.620e-22
Identity = 101/317 (31.86%), Postives = 130/317 (41.01%), Query Frame = 1 
Query:  313 DDGELPPCLLGVFDSFFGGRSK-------------------------------NGAPPAPRSPSTMTGVSVGVGRAAFAQLHIRDLNDIKNLSGARIVAPDSPESFGNISEDVMANVSAI-SRVARGNAPVEGFGLAVSNIEVNQATAAGATGASSSPVDPMSSAL---------------------------SKPAEHFGRETDELYGMSRLSLDHSYRFVGTAADAMQRESAMGSRLILKHRHPFGGAAAGHGENMLEAVTMPQGFGDKGGDVEGRIAYRSPLKMVRITGTAEEVQLAEYLIRVRTAVLDTEAAS 1086
            DDGELP CL+G+ DSF GG  K                               NGA P  RSPST+TG+ + VGR+AFA+L  R L+DIK+LSGA I AP+SPE + ++S++ +A + A+ S  ARGNAP +G GLA                                                        S P E FG +      M   +        G  A      S +G    +          +    ++  AV    G            A  + LK V+ITGTAEEVQLAEYLIRVRT   +  AAS
Sbjct:  518 DDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSGNXGSVGNSNANEKNGNNNGAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYCHLSDEALAAMGAVYSSAARGNAPCDGVGLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPFEGFGLKEGVRGNMGGGAATTP----GAIAAVTGGVSRLGLGTTMSXXXXXXXXVS---PSLASAVGQVSGGLXXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVRTTGGNMAAAS 827
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64542.14042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKQ3_ECTSI3.370e-2534.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8U0_9PHAE1.620e-2231.86KH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64542contigH-elongata_contig64542:1639..2724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004400.1
Exons1
Model size1086
Cds size1086
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.4688432-CDS-H-elongata_contig64542:1638..27241622931031.4688432-CDS-H-elongata_contig64542:1638..2724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64542 1639..2724 +
1691679669.3513014-CDS-H-elongata_contig64542:1638..27241691679669.3513014-CDS-H-elongata_contig64542:1638..2724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64542 1639..2724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64542.14042.1prot_H-elongata_contig64542.14042.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64542 1639..2724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64542.14042.1

>prot_H-elongata_contig64542.14042.1 ID=prot_H-elongata_contig64542.14042.1|Name=mRNA_H-elongata_contig64542.14042.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=362bp
MLSSPPPAAITPDPSGEKGRGTNTTPLQSSPPKGSPCGSTNGSVEDFGST
SDARLMFDRGPFSSPATNTTGGAVVPALDAGGAASVASGSALEDSGGVAI
GVNRDDGELPPCLLGVFDSFFGGRSKNGAPPAPRSPSTMTGVSVGVGRAA
FAQLHIRDLNDIKNLSGARIVAPDSPESFGNISEDVMANVSAISRVARGN
APVEGFGLAVSNIEVNQATAAGATGASSSPVDPMSSALSKPAEHFGRETD
ELYGMSRLSLDHSYRFVGTAADAMQRESAMGSRLILKHRHPFGGAAAGHG
ENMLEAVTMPQGFGDKGGDVEGRIAYRSPLKMVRITGTAEEVQLAEYLIR
VRTAVLDTEAAS
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mRNA from alignment at H-elongata_contig64542:1639..2724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64542.14042.1 ID=mRNA_H-elongata_contig64542.14042.1|Name=mRNA_H-elongata_contig64542.14042.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1086bp|location=Sequence derived from alignment at H-elongata_contig64542:1639..2724+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTCATCCCCACCTCCCGCGGCGATCACGCCCGATCCATCGGGGGA
GAAGGGACGTGGAACGAACACTACCCCTCTACAGTCTTCTCCTCCCAAAG
GATCTCCATGCGGCAGCACTAACGGGTCCGTGGAAGACTTCGGCAGCACA
AGCGACGCTCGTCTCATGTTTGACCGTGGACCGTTTTCCTCTCCCGCTAC
CAACACCACTGGAGGTGCGGTCGTTCCCGCTCTCGATGCCGGCGGTGCTG
CGAGTGTCGCTAGCGGTAGCGCCCTTGAAGATAGTGGGGGCGTGGCGATC
GGTGTCAACAGAGACGACGGTGAGCTCCCGCCCTGTCTCCTCGGCGTCTT
CGATTCGTTCTTCGGAGGCCGTTCCAAGAACGGCGCCCCTCCGGCCCCTC
GCAGTCCTTCGACCATGACGGGGGTTAGCGTGGGGGTGGGGCGGGCGGCG
TTCGCTCAGCTCCACATTCGTGACTTAAACGACATCAAGAACCTCTCCGG
TGCGAGAATCGTCGCCCCCGATTCCCCCGAGAGCTTCGGCAATATTTCTG
AAGATGTCATGGCGAATGTCTCCGCAATCTCAAGGGTCGCTCGCGGGAAC
GCTCCCGTCGAAGGCTTCGGTTTAGCGGTCTCAAACATCGAGGTGAACCA
GGCAACCGCCGCCGGCGCCACCGGCGCTAGCTCCAGCCCTGTTGATCCCA
TGTCTAGCGCCCTGTCCAAGCCCGCGGAGCACTTCGGCAGGGAAACGGAC
GAACTCTACGGCATGTCTCGCCTGAGCCTGGACCACAGCTACCGCTTCGT
CGGCACCGCTGCCGACGCAATGCAGAGGGAAAGCGCGATGGGATCACGCC
TGATCCTGAAACACCGCCACCCTTTCGGTGGCGCCGCTGCCGGGCATGGG
GAAAACATGCTGGAAGCAGTGACGATGCCTCAAGGCTTCGGAGACAAGGG
CGGTGATGTGGAAGGAAGAATCGCCTACAGGAGCCCCCTGAAGATGGTAC
GGATCACTGGCACCGCGGAAGAAGTACAGCTAGCGGAGTATCTCATCCGC
GTTCGGACGGCAGTCCTCGACACGGAAGCAGCGTCA
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Coding sequence (CDS) from alignment at H-elongata_contig64542:1639..2724+

>mRNA_H-elongata_contig64542.14042.1 ID=mRNA_H-elongata_contig64542.14042.1|Name=mRNA_H-elongata_contig64542.14042.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2172bp|location=Sequence derived from alignment at H-elongata_contig64542:1639..2724+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTCATCCCCACCTCCCGCGGCGATCACGCCCGATCCATCGGGGGA
GAAGGGACGTGGAACGAACACTACCCCTCTACAGTCTTCTCCTCCCAAAG
GATCTCCATGCGGCAGCACTAACGGGTCCGTGGAAGACTTCGGCAGCACA
AGCGACGCTCGTCTCATGTTTGACCGTGGACCGTTTTCCTCTCCCGCTAC
CAACACCACTGGAGGTGCGGTCGTTCCCGCTCTCGATGCCGGCGGTGCTG
CGAGTGTCGCTAGCGGTAGCGCCCTTGAAGATAGTGGGGGCGTGGCGATC
GGTGTCAACAGAGACGACGGTGAGCTCCCGCCCTGTCTCCTCGGCGTCTT
CGATTCGTTCTTCGGAGGCCGTTCCAAGAACGGCGCCCCTCCGGCCCCTC
GCAGTCCTTCGACCATGACGGGGGTTAGCGTGGGGGTGGGGCGGGCGGCG
TTCGCTCAGCTCCACATTCGTGACTTAAACGACATCAAGAACCTCTCCGG
TGCGAGAATCGTCGCCCCCGATTCCCCCGAGAGCTTCGGCAATATTTCTG
AAGATGTCATGGCGAATGTCTCCGCAATCTCAAGGGTCGCTCGCGGGAAC
GCTCCCGTCGAAGGCTTCGGTTTAGCGGTCTCAAACATCGAGGTGAACCA
GGCAACCGCCGCCGGCGCCACCGGCGCTAGCTCCAGCCCTGTTGATCCCA
TGTCTAGCGCCCTGTCCAAGCCCGCGGAGCACTTCGGCAGGGAAACGGAC
GAACTCTACGGCATGTCTCGCCTGAGCCTGGACCACAGCTACCGCTTCGT
CGGCACCGCTGCCGACGCAATGCAGAGGGAAAGCGCGATGGGATCACGCC
TGATCCTGAAACACCGCCACCCTTTCGGTGGCGCCGCTGCCGGGCATGGG
GAAAACATGCTGGAAGCAGTGACGATGCCTCAAGGCTTCGGAGACAAGGG
CGGTGATGTGGAAGGAAGAATCGCCTACAGGAGCCCCCTGAAGATGGTAC
GGATCACTGGCACCGCGGAAGAAGTACAGCTAGCGGAGTATCTCATCCGC
GTTCGGACGGCAGTCCTCGACACGGAAGCAGCGTCAATGCTCTCATCCCC
ACCTCCCGCGGCGATCACGCCCGATCCATCGGGGGAGAAGGGACGTGGAA
CGAACACTACCCCTCTACAGTCTTCTCCTCCCAAAGGATCTCCATGCGGC
AGCACTAACGGGTCCGTGGAAGACTTCGGCAGCACAAGCGACGCTCGTCT
CATGTTTGACCGTGGACCGTTTTCCTCTCCCGCTACCAACACCACTGGAG
GTGCGGTCGTTCCCGCTCTCGATGCCGGCGGTGCTGCGAGTGTCGCTAGC
GGTAGCGCCCTTGAAGATAGTGGGGGCGTGGCGATCGGTGTCAACAGAGA
CGACGGTGAGCTCCCGCCCTGTCTCCTCGGCGTCTTCGATTCGTTCTTCG
GAGGCCGTTCCAAGAACGGCGCCCCTCCGGCCCCTCGCAGTCCTTCGACC
ATGACGGGGGTTAGCGTGGGGGTGGGGCGGGCGGCGTTCGCTCAGCTCCA
CATTCGTGACTTAAACGACATCAAGAACCTCTCCGGTGCGAGAATCGTCG
CCCCCGATTCCCCCGAGAGCTTCGGCAATATTTCTGAAGATGTCATGGCG
AATGTCTCCGCAATCTCAAGGGTCGCTCGCGGGAACGCTCCCGTCGAAGG
CTTCGGTTTAGCGGTCTCAAACATCGAGGTGAACCAGGCAACCGCCGCCG
GCGCCACCGGCGCTAGCTCCAGCCCTGTTGATCCCATGTCTAGCGCCCTG
TCCAAGCCCGCGGAGCACTTCGGCAGGGAAACGGACGAACTCTACGGCAT
GTCTCGCCTGAGCCTGGACCACAGCTACCGCTTCGTCGGCACCGCTGCCG
ACGCAATGCAGAGGGAAAGCGCGATGGGATCACGCCTGATCCTGAAACAC
CGCCACCCTTTCGGTGGCGCCGCTGCCGGGCATGGGGAAAACATGCTGGA
AGCAGTGACGATGCCTCAAGGCTTCGGAGACAAGGGCGGTGATGTGGAAG
GAAGAATCGCCTACAGGAGCCCCCTGAAGATGGTACGGATCACTGGCACC
GCGGAAGAAGTACAGCTAGCGGAGTATCTCATCCGCGTTCGGACGGCAGT
CCTCGACACGGAAGCAGCGTCA
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