mRNA_H-elongata_contig64515.14039.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64515.14039.1
Unique NamemRNA_H-elongata_contig64515.14039.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64515.14039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64515contigH-elongata_contig64515:1223..2045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size349
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64515.14039.1prot_H-elongata_contig64515.14039.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64515 1777..2045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.211346-UTR-H-elongata_contig64515:1222..12601622931031.211346-UTR-H-elongata_contig64515:1222..1260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64515 1223..1260 +
1691679669.2389522-UTR-H-elongata_contig64515:1222..12601691679669.2389522-UTR-H-elongata_contig64515:1222..1260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64515 1223..1260 +
1622931031.2252035-UTR-H-elongata_contig64515:1654..17761622931031.2252035-UTR-H-elongata_contig64515:1654..1776Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64515 1655..1776 +
1691679669.2512486-UTR-H-elongata_contig64515:1654..17761691679669.2512486-UTR-H-elongata_contig64515:1654..1776Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64515 1655..1776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.2390513-CDS-H-elongata_contig64515:1776..18851622931031.2390513-CDS-H-elongata_contig64515:1776..1885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64515 1777..1885 +
1691679669.268591-CDS-H-elongata_contig64515:1776..18851691679669.268591-CDS-H-elongata_contig64515:1776..1885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64515 1777..1885 +
1622931031.265826-CDS-H-elongata_contig64515:1965..20451622931031.265826-CDS-H-elongata_contig64515:1965..2045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64515 1966..2045 +
1691679669.2789373-CDS-H-elongata_contig64515:1965..20451691679669.2789373-CDS-H-elongata_contig64515:1965..2045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64515 1966..2045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64515.14039.1

>prot_H-elongata_contig64515.14039.1 ID=prot_H-elongata_contig64515.14039.1|Name=mRNA_H-elongata_contig64515.14039.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MKNARRYLAALYPSRARCRSQRRSSSSSTSSTMTPDRNLGFIRQSKHKTT
AIFHYIFKFLALF
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mRNA from alignment at H-elongata_contig64515:1223..2045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64515.14039.1 ID=mRNA_H-elongata_contig64515.14039.1|Name=mRNA_H-elongata_contig64515.14039.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=823bp|location=Sequence derived from alignment at H-elongata_contig64515:1223..2045+ (Himanthalia elongata Himel1 dioecious)
CGAACACTAACTCTGAAGTTCGCCAGGTGATTGAGAGGGTGAGCAAGTGA
GAACTGGTGATATCTATAATACGATTTGATTTCGTGTTACTACCGTTGCT
TCTGTCAAAAAGATTCTGATCGCTTGTTCGCAGTAATCACATCGTGGCGA
ACCTTCGAATCTGTCACCACGACCGTCGTAGGGAATTGTAACGTCGGGTA
GTCTACAGTTACCGTGCTGTCCATCCTGGGGAAGGCAACAGCAAAATAAT
TCGGTTCCACACCTATGCCGATGAAATTTTTACGGTCGGTGAGAACTGCT
TTGATTTCTTCCCTTTGTCCCTTGCCTTAGTCCGCCATCTCCCATCACGC
GTTACCCCCTCTGTTTTACTTGTGCTGTGTATTTCTCCACGACCACCAAC
CGAACGGGTTGTTCCACGTCTACTATTATAAGTTATAACCCCCGTGCGTC
TCCCACTATAACACATCGAGGAACAGCGCAGGTCTCCAAATGTAAGCTAC
AGAAGACTCAATATACCGTCCGGAACAGCCCGTTCACAAACATGTATCGT
TTGGATGAAAAACGCCCGTCGATACCTCGCAGCCCTGTATCCGAGCCGAG
CAAGATGCCGAAGCCAGAGGAGGAGCTCGAGTTCATCAACGTCGTCGACC
ATGACTCCGGATCGCAATCGTTGGGTGGGGGCGGTCGTGCCGTGGGCCCC
GGCGGATTGGGTGGGGGCGGCGCGGGGATGGGTTTTGGCGGGGGCAATCT
CGGATTCATTCGGCAGTCGAAGCATAAGACAACGGCAATCTTCCACTACA
TTTTCAAGTTTCTGGCCTTATTC
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Coding sequence (CDS) from alignment at H-elongata_contig64515:1223..2045+

>mRNA_H-elongata_contig64515.14039.1 ID=mRNA_H-elongata_contig64515.14039.1|Name=mRNA_H-elongata_contig64515.14039.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig64515:1223..2045+ (Himanthalia elongata Himel1 dioecious)
ATGAAAAACGCCCGTCGATACCTCGCAGCCCTGTATCCGAGCCGAGCAAG
ATGCCGAAGCCAGAGGAGGAGCTCGAGTTCATCAACGTCGTCGACCATGA
CTCCGGATCATGAAAAACGCCCGTCGATACCTCGCAGCCCTGTATCCGAG
CCGAGCAAGATGCCGAAGCCAGAGGAGGAGCTCGAGTTCATCAACGTCGT
CGACCATGACTCCGGATCGCAATCTCGGATTCATTCGGCAGTCGAAGCAT
AAGACAACGGCAATCTTCCACTACATTTTCAAGTTTCTGGCCTTATTCGC
AATCTCGGATTCATTCGGCAGTCGAAGCATAAGACAACGGCAATCTTCCA
CTACATTTTCAAGTTTCTGGCCTTATTC
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