mRNA_H-elongata_contig64513.14038.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64513.14038.1
Unique NamemRNA_H-elongata_contig64513.14038.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64513.14038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64513contigH-elongata_contig64513:1720..2153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64513.14038.1prot_H-elongata_contig64513.14038.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64513 1721..2153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.125591-UTR-H-elongata_contig64513:1719..17201622931031.125591-UTR-H-elongata_contig64513:1719..1720Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64513 1720..1720 +
1691679669.2018838-UTR-H-elongata_contig64513:1719..17201691679669.2018838-UTR-H-elongata_contig64513:1719..1720Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64513 1720..1720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.1432376-CDS-H-elongata_contig64513:1720..18421622931031.1432376-CDS-H-elongata_contig64513:1720..1842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64513 1721..1842 +
1691679669.2141647-CDS-H-elongata_contig64513:1720..18421691679669.2141647-CDS-H-elongata_contig64513:1720..1842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64513 1721..1842 +
1622931031.1576436-CDS-H-elongata_contig64513:2029..21531622931031.1576436-CDS-H-elongata_contig64513:2029..2153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64513 2030..2153 +
1691679669.2275422-CDS-H-elongata_contig64513:2029..21531691679669.2275422-CDS-H-elongata_contig64513:2029..2153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64513 2030..2153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64513.14038.1

>prot_H-elongata_contig64513.14038.1 ID=prot_H-elongata_contig64513.14038.1|Name=mRNA_H-elongata_contig64513.14038.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MSSPRPRVWFASERLTRSAMSKGRWLSQEKYRGTAPCGTVSRLCRRLGPV
RRCCPAVRLVDMAWASSPAGVEWVGAVPGIVY
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mRNA from alignment at H-elongata_contig64513:1720..2153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64513.14038.1 ID=mRNA_H-elongata_contig64513.14038.1|Name=mRNA_H-elongata_contig64513.14038.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=434bp|location=Sequence derived from alignment at H-elongata_contig64513:1720..2153+ (Himanthalia elongata Himel1 dioecious)
GATGTCGTCGCCTAGGCCTCGGGTATGGTTCGCCTCCGAGCGACTTACCC
GGAGTGCCATGAGTAAAGGACGCTGGCTCTCTCAAGAGAAATACCGTGGC
ACCGCCCCCTGCGGAACGGTCAGCAGATGGGTTGCGTTTGGCTTCACTGT
CACGCCGGGAGAGGTATTCTCGGTGTAGGCCCTCTTCGTAGCCTCCTTGG
GTCCTATCCCCCCTGCGTTGACCATGCGCCGGGGCGTCCCCCCTGCGTCG
GGACCGCTCTTTTGAAGCCTGGGCGTTCCCTGTTGCCCCCCCATGTCGGG
ACTGCCACCCCAGGTTGTGTCGTCGCTTGGGGCCAGTGAGGCGGTGCTGT
CCCGCTGTCCGACTGGTGGATATGGCCTGGGCGTCTTCTCCCGCCGGCGT
GGAGTGGGTGGGAGCGGTCCCGGGTATAGTGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig64513:1720..2153+

>mRNA_H-elongata_contig64513.14038.1 ID=mRNA_H-elongata_contig64513.14038.1|Name=mRNA_H-elongata_contig64513.14038.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig64513:1720..2153+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTCGCCTAGGCCTCGGGTATGGTTCGCCTCCGAGCGACTTACCCG
GAGTGCCATGAGTAAAGGACGCTGGCTCTCTCAAGAGAAATACCGTGGCA
CCGCCCCCTGCGGAACGGTCAGATGTCGTCGCCTAGGCCTCGGGTATGGT
TCGCCTCCGAGCGACTTACCCGGAGTGCCATGAGTAAAGGACGCTGGCTC
TCTCAAGAGAAATACCGTGGCACCGCCCCCTGCGGAACGGTCAGCAGGTT
GTGTCGTCGCTTGGGGCCAGTGAGGCGGTGCTGTCCCGCTGTCCGACTGG
TGGATATGGCCTGGGCGTCTTCTCCCGCCGGCGTGGAGTGGGTGGGAGCG
GTCCCGGGTATAGTGTACCAGGTTGTGTCGTCGCTTGGGGCCAGTGAGGC
GGTGCTGTCCCGCTGTCCGACTGGTGGATATGGCCTGGGCGTCTTCTCCC
GCCGGCGTGGAGTGGGTGGGAGCGGTCCCGGGTATAGTGTAC
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