mRNA_H-elongata_contig64510.14037.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64510.14037.1
Unique NamemRNA_H-elongata_contig64510.14037.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64510.14037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64510contigH-elongata_contig64510:1228..1866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.0651069-CDS-H-elongata_contig64510:1228..13661622931031.0651069-CDS-H-elongata_contig64510:1228..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64510 1229..1366 -
1691679669.1822033-CDS-H-elongata_contig64510:1228..13661691679669.1822033-CDS-H-elongata_contig64510:1228..1366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64510 1229..1366 -
1622931031.0817773-CDS-H-elongata_contig64510:1764..18661622931031.0817773-CDS-H-elongata_contig64510:1764..1866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64510 1765..1866 -
1691679669.192147-CDS-H-elongata_contig64510:1764..18661691679669.192147-CDS-H-elongata_contig64510:1764..1866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64510 1765..1866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64510.14037.1prot_H-elongata_contig64510.14037.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64510 1229..1866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64510.14037.1

>prot_H-elongata_contig64510.14037.1 ID=prot_H-elongata_contig64510.14037.1|Name=mRNA_H-elongata_contig64510.14037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
LTSTPHEKWANYAARANVTWDQTTSNMTETTNSMMRALPVFDFIQGLVQQ
QAARLHHLSQLKLHDDSARFTPFAMAKYNA
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mRNA from alignment at H-elongata_contig64510:1228..1866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64510.14037.1 ID=mRNA_H-elongata_contig64510.14037.1|Name=mRNA_H-elongata_contig64510.14037.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=639bp|location=Sequence derived from alignment at H-elongata_contig64510:1228..1866- (Himanthalia elongata Himel1 dioecious)
CTGACGAGCACCCCCCACGAAAAATGGGCGAACTACGCAGCACGAGCGAA
CGTCACTTGGGACCAAACAACGTCGAACATGACGGAAACGACGAATAGCA
TGGTGGGAGTGCAGGTGAATAAAAATGCTCTGTAGCGGCAGGCTTTTGTC
GTGCTAGTTAAGCGCCTTAGTGTAATTCTGCCTGTACAGATATTGATATT
TTTTTGGCGACATGTTGTTGGTTCAGGGAAGAAGGGATCCTGCATTGAGC
AGTCGTGTAACAAACATTTCATCAGCTTGAGGGTACAGAACCGTCCTCAT
TTAATTGATGCCGAGATGATTTGTGCACAGTGTTTGCTGTAACATGAATT
CATCACATTTGGAAGGCTGTCACGTCGATTAACTGCTCTACAGGGTATAA
CGCAGCCAGTCTACCACCACTTTTGTTGCCGAGTGCAGCGAGCTCGTCAT
CTGAATACACCACTTCTTACTGTGCCTTTGTTTTGTCCATCCTTACATAG
ATGAGAGCGCTTCCAGTGTTCGACTTTATTCAAGGGCTCGTTCAGCAACA
AGCAGCACGTCTACACCATTTATCCCAGCTGAAACTACATGATGACTCAG
CGCGCTTCACACCCTTTGCCATGGCAAAGTACAACGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig64510:1228..1866-

>mRNA_H-elongata_contig64510.14037.1 ID=mRNA_H-elongata_contig64510.14037.1|Name=mRNA_H-elongata_contig64510.14037.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig64510:1228..1866- (Himanthalia elongata Himel1 dioecious)
CTGACGAGCACCCCCCACGAAAAATGGGCGAACTACGCAGCACGAGCGAA
CGTCACTTGGGACCAAACAACGTCGAACATGACGGAAACGACGAATAGCA
TGCTGACGAGCACCCCCCACGAAAAATGGGCGAACTACGCAGCACGAGCG
AACGTCACTTGGGACCAAACAACGTCGAACATGACGGAAACGACGAATAG
CATGATGAGAGCGCTTCCAGTGTTCGACTTTATTCAAGGGCTCGTTCAGC
AACAAGCAGCACGTCTACACCATTTATCCCAGCTGAAACTACATGATGAC
TCAGCGCGCTTCACACCCTTTGCCATGGCAAAGTACAACGCGATGAGAGC
GCTTCCAGTGTTCGACTTTATTCAAGGGCTCGTTCAGCAACAAGCAGCAC
GTCTACACCATTTATCCCAGCTGAAACTACATGATGACTCAGCGCGCTTC
ACACCCTTTGCCATGGCAAAGTACAACGCG
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