mRNA_H-elongata_contig64506.14036.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64506.14036.1
Unique NamemRNA_H-elongata_contig64506.14036.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Match: A0A097IU67_9PHAE (Pyruvate kinase n=6 Tax=Sargassum TaxID=3015 RepID=A0A097IU67_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.540e-54
Identity = 88/95 (92.63%), Postives = 93/95 (97.89%), Query Frame = 1
Query:   67 SQDNIFSECDESRRRVKIICTLGPACWDVETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVMLDTKGPEIRTGFLADKET 351
            SQDNIF+ECDESRRRVKIICTLGPACWDVETLGKL+DAGMNVAR NFSHG+HE HAATLQRLR+AL+TRRGKHVAVMLDTKGPEIRTGFLADKET
Sbjct:   11 SQDNIFAECDESRRRVKIICTLGPACWDVETLGKLIDAGMNVARFNFSHGNHESHAATLQRLRQALATRRGKHVAVMLDTKGPEIRTGFLADKET 105          
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Match: A0A097IU48_9PHAE (Pyruvate kinase n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A097IU48_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.310e-49
Identity = 82/95 (86.32%), Postives = 90/95 (94.74%), Query Frame = 1
Query:   67 SQDNIFSECDESRRRVKIICTLGPACWDVETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVMLDTKGPEIRTGFLADKET 351
            SQD IF++CDESRR+ KIICTLGPACW VETLG LVDAGMNVARLNFSHGDHEGHAATLQRLR+AL TRRGKHVAV+LDTKGPEIRTGFLA+K++
Sbjct:   12 SQDKIFTDCDESRRKCKIICTLGPACWSVETLGALVDAGMNVARLNFSHGDHEGHAATLQRLRQALYTRRGKHVAVLLDTKGPEIRTGFLANKKS 106          
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Match: A0A097IU44_9PHAE (Pyruvate kinase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IU44_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 3.740e-41
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 1
Query:   67 SQDNIFSECDESRRRVKIICTLGPACWDVETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVMLDTKGPEIRTGFLAD 342
            SQ++IF+E D SRR+ KIICTLGPACW  ETLG L+DAGMNVARLNFSHGDHE HAATL RLR AL +RR KHVAVMLDTKGPEIR+GF AD
Sbjct:   11 SQEDIFTEVDVSRRKTKIICTLGPACWSEETLGALIDAGMNVARLNFSHGDHETHAATLTRLRSALVSRRKKHVAVMLDTKGPEIRSGFFAD 102          
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Match: A0A836CKC5_9STRA (Pyruvate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC5_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.980e-40
Identity = 72/88 (81.82%), Postives = 76/88 (86.36%), Query Frame = 1
Query:   73 DNIFSECDESRRRVKIICTLGPACWDVETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVMLDTKGPEIRTGFL 336
            D IF E +   R+ KIICTLGPACW VE LG L+DAGMNVARLNFSHGDHEGHAATL RLR+ALSTRRGKHV VMLDTKGPEIRTGFL
Sbjct:   16 DTIFHETNVITRKTKIICTLGPACWSVEKLGCLIDAGMNVARLNFSHGDHEGHAATLLRLRQALSTRRGKHVGVMLDTKGPEIRTGFL 103          
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Match: A0A4D9DC03_9STRA (Pyruvate kinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC03_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.270e-37
Identity = 70/107 (65.42%), Postives = 82/107 (76.64%), Query Frame = 1
Query:   31 PPRTYLTLLKPSSQDNIFSECDESRRRVKIICTLGPACWDVETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVMLDTKGPEIRTGFLADKET 351
            PP  ++      + D++  E + + R+ KI+CTLGPACW VE LGKL+DAGMNVARLNFSHGDHEGH ATL RLR AL+TR G HVAVMLDTKGPEIRTGFL   +T
Sbjct:    4 PPAGHVLRESNITLDHVLRE-NNAIRKSKIVCTLGPACWSVEGLGKLIDAGMNVARLNFSHGDHEGHGATLDRLREALATRPGVHVAVMLDTKGPEIRTGFLGSAKT 109          
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Match: W7TLB7_9STRA (Pyruvate kinase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLB7_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.660e-37
Identity = 73/117 (62.39%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    1 IQLSPLSASPPPRTYLTLLKPSSQDNIFSECDESRRRVKIICTLGPACWDVETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVMLDTKGPEIRTGFLADKET 351
            I L   S + PP  ++      + D++  E + + R+ KI+CTLGPACW VE LGKL+DAGMNVARLNFSHGDHEGH ATL RLR AL+TR G HVAVMLDTKGPEIRTGFL   +T
Sbjct:  279 ILLEASSMASPPAGHVLRESNITLDHVLRE-NNAIRKSKIVCTLGPACWSVEGLGKLIDAGMNVARLNFSHGDHEGHGATLDRLREALATRPGVHVAVMLDTKGPEIRTGFLGSAKT 394          
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Match: A0A2D4BV79_PYTIN (Pyruvate kinase n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BV79_PYTIN)

HSP 1 Score: 135 bits (339), Expect = 3.100e-35
Identity = 63/92 (68.48%), Postives = 76/92 (82.61%), Query Frame = 1
Query:   73 DNIFSECDESRRRVKIICTLGPACWDVETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVMLDTKGPEIRTGFLADKE 348
            D+I    DES R+ KI+CTLGP+CW  ETLG+L+DAGMN+ARLNFSHGDH  HA TL RLR AL++R  K+VAV+LDTKGPEIRTGFL +K+
Sbjct:   15 DSIMRSFDESTRKTKIVCTLGPSCWSQETLGQLIDAGMNIARLNFSHGDHATHAETLSRLRGALASRPHKNVAVVLDTKGPEIRTGFLKNKD 106          
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Match: A0A7S3T0Z0_9SPIT (Pyruvate kinase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T0Z0_9SPIT)

HSP 1 Score: 125 bits (314), Expect = 1.300e-34
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 1
Query:   94 DESRRRVKIICTLGPACWDVETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVMLDTKGPEIRTGFLAD 342
            D   R+ KIICT+GP CWDV+TL KL+DAGMN+ RLNFSHGDHEGH AT++R+R A +TR  K VA++LDTKGPEIRTGF  +
Sbjct:   53 DTPSRKCKIICTMGPNCWDVDTLVKLIDAGMNICRLNFSHGDHEGHGATVKRIREAAATRPDKPVAILLDTKGPEIRTGFFRE 135          
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Match: A0A485L8Q7_9STRA (Pyruvate kinase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485L8Q7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.340e-34
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   76 NIFSECDESRRRVKIICTLGPACWDVETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVMLDTKGPEIRTGFLA 339
            +I    D   RR KI+CT+GPACW VE LG+L+DAGMNVARLNFSHGDH+GH  TL RLR+A++TR  K VAVMLDTKGPEIRTGFL+
Sbjct:   16 HIMGSTDGITRRTKIVCTIGPACWSVEQLGQLIDAGMNVARLNFSHGDHKGHGETLTRLRQAIATRPHKQVAVMLDTKGPEIRTGFLS 103          
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Match: A0A662WS39_9STRA (Pyruvate kinase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WS39_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.860e-34
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 1
Query:   73 DNIFSECDESRRRVKIICTLGPACWDVETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVMLDTKGPEIRTGFLADKE 348
            D+I    D  +R+ KI CTLGPACW  E LG+L+DAGMNVAR NFSHGDHE HA TL RLR AL++R  K++A+MLDTKGPEIRTGFLA+K+
Sbjct:   23 DSIMKSTDGVQRKTKIFCTLGPACWTQEGLGELIDAGMNVARFNFSHGDHESHADTLTRLRGALASRPHKNIAIMLDTKGPEIRTGFLANKD 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64506.14036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097IU67_9PHAE2.540e-5492.63Pyruvate kinase n=6 Tax=Sargassum TaxID=3015 RepID... [more]
A0A097IU48_9PHAE1.310e-4986.32Pyruvate kinase n=10 Tax=Phaeophyceae TaxID=2870 R... [more]
A0A097IU44_9PHAE3.740e-4179.35Pyruvate kinase n=1 Tax=Dictyopteris undulata TaxI... [more]
A0A836CKC5_9STRA2.980e-4081.82Pyruvate kinase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A4D9DC03_9STRA2.270e-3765.42Pyruvate kinase n=1 Tax=Nannochloropsis salina CCM... [more]
W7TLB7_9STRA3.660e-3762.39Pyruvate kinase n=2 Tax=Nannochloropsis gaditana T... [more]
A0A2D4BV79_PYTIN3.100e-3568.48Pyruvate kinase n=2 Tax=Pythium TaxID=4797 RepID=A... [more]
A0A7S3T0Z0_9SPIT1.300e-3467.47Pyruvate kinase (Fragment) n=1 Tax=Strombidinopsis... [more]
A0A485L8Q7_9STRA2.340e-3470.45Pyruvate kinase n=5 Tax=Aphanomyces TaxID=100860 R... [more]
A0A662WS39_9STRA4.860e-3467.39Pyruvate kinase n=2 Tax=Nothophytophthora sp. Chil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64506contigH-elongata_contig64506:2637..3443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue5.9e-42
Seed eggNOG ortholog2880.D7FYR2
Preferred namePYK
KEGG rclassRC00002,RC00015
KEGG koko:K00873
KEGG ReactionR00200,R00430,R01138,R01858,R02320
KEGG Pathwayko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map04930,map05165,map05203,map05230
KEGG ModuleM00001,M00002,M00049,M00050
EggNOG free text desc.pyruvate kinase activity
EggNOG OGsCOG0469@1,KOG2323@2759
EC2.7.1.40
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpyruvate kinase
Ec32 orthologEc-26_004170.1
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.9979942-CDS-H-elongata_contig64506:2636..29451622931030.9979942-CDS-H-elongata_contig64506:2636..2945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64506 2637..2945 +
1691679669.1440096-CDS-H-elongata_contig64506:2636..29451691679669.1440096-CDS-H-elongata_contig64506:2636..2945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64506 2637..2945 +
1622931031.0174043-CDS-H-elongata_contig64506:3401..34431622931031.0174043-CDS-H-elongata_contig64506:3401..3443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64506 3402..3443 +
1691679669.1646717-CDS-H-elongata_contig64506:3401..34431691679669.1646717-CDS-H-elongata_contig64506:3401..3443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64506 3402..3443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64506.14036.1prot_H-elongata_contig64506.14036.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64506 2637..3443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64506.14036.1

>prot_H-elongata_contig64506.14036.1 ID=prot_H-elongata_contig64506.14036.1|Name=mRNA_H-elongata_contig64506.14036.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
IQLSPLSASPPPRTYLTLLKPSSQDNIFSECDESRRRVKIICTLGPACWD
VETLGKLVDAGMNVARLNFSHGDHEGHAATLQRLRRALSTRRGKHVAVML
DTKGPEIRTGFLADKET
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mRNA from alignment at H-elongata_contig64506:2637..3443+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64506.14036.1 ID=mRNA_H-elongata_contig64506.14036.1|Name=mRNA_H-elongata_contig64506.14036.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=807bp|location=Sequence derived from alignment at H-elongata_contig64506:2637..3443+ (Himanthalia elongata Himel1 dioecious)
ATTCAACTCTCGCCCTTGTCCGCTTCGCCCCCCCCCCGTACATACCTCAC TCTTTTGAAACCTTCCAGCCAAGACAACATCTTCTCCGAATGCGATGAGT CTCGCCGTCGGGTGAAGATCATCTGCACCCTGGGCCCCGCGTGTTGGGAC GTAGAGACGCTCGGCAAGCTGGTCGACGCCGGCATGAACGTGGCCCGCTT AAACTTCAGCCACGGCGACCACGAGGGACACGCCGCTACCCTGCAGCGCC TGCGACGGGCGCTCTCCACCCGACGCGGAAAGCACGTGGCCGTCATGCTA GACACCAAGGTTGGATGGGCTCTCTGCGAAGGCGACGGGGAAGCGCGGGG ATCGGGGTGCTGTGTATTTATTATGAGCGTTATATTTTCTGCCAGATAGG GTTGCTGATGTGCGGTGATATCTGTCTCTCTCTCTTAAGTAGTATATGCT GTAGTTGTGCTTTGACCCCTCATACGATTGCCTGTTGGATACCGTTCTTA ACTGCCGTCTAGCCTCCGGCGAAGAATACTGCTTTCTTGGCTCTCTAGAT CTCCCACGCGCGAATAACCATTCGATTTGGCGTGCGTGTCGATTCAACTC TTATCTGGCTCGATTCGGATACAGTACAATCCTTATAGTGTGATAGTGTG ATAAAAAAGCCGGTGGGAGGTGTTCCAATTTATCTACTCTACAAGTACCG AAGGTTCGACCTTTCCCTCTCTTTTACCCCTCCCCCGCTGTTTTGACCCC CCCCCCCCCCCAAAGGGCCCCGAGATCCGAACCGGTTTCCTTGCGGACAA GGAAACG
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Coding sequence (CDS) from alignment at H-elongata_contig64506:2637..3443+

>mRNA_H-elongata_contig64506.14036.1 ID=mRNA_H-elongata_contig64506.14036.1|Name=mRNA_H-elongata_contig64506.14036.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig64506:2637..3443+ (Himanthalia elongata Himel1 dioecious)
ATTCAACTCTCGCCCTTGTCCGCTTCGCCCCCCCCCCGTACATACCTCAC
TCTTTTGAAACCTTCCAGCCAAGACAACATCTTCTCCGAATGCGATGAGT
CTCGCCGTCGGGTGAAGATCATCTGCACCCTGGGCCCCGCGTGTTGGGAC
GTAGAGACGCTCGGCAAGCTGGTCGACGCCGGCATGAACGTGGCCCGCTT
AAACTTCAGCCACGGCGACCACGAGGGACACGCCGCTACCCTGCAGCGCC
TGCGACGGGCGCTCTCCACCCGACGCGGAAAGCACGTGGCCGTCATGCTA
GACACCAAGATTCAACTCTCGCCCTTGTCCGCTTCGCCCCCCCCCCGTAC
ATACCTCACTCTTTTGAAACCTTCCAGCCAAGACAACATCTTCTCCGAAT
GCGATGAGTCTCGCCGTCGGGTGAAGATCATCTGCACCCTGGGCCCCGCG
TGTTGGGACGTAGAGACGCTCGGCAAGCTGGTCGACGCCGGCATGAACGT
GGCCCGCTTAAACTTCAGCCACGGCGACCACGAGGGACACGCCGCTACCC
TGCAGCGCCTGCGACGGGCGCTCTCCACCCGACGCGGAAAGCACGTGGCC
GTCATGCTAGACACCAAGGGCCCCGAGATCCGAACCGGTTTCCTTGCGGA
CAAGGAAACGGGCCCCGAGATCCGAACCGGTTTCCTTGCGGACAAGGAAA
CG
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