mRNA_H-elongata_contig64463.14034.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64463.14034.1
Unique NamemRNA_H-elongata_contig64463.14034.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Match: D7FQD9_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD9_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.030e-48
Identity = 91/121 (75.21%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 LKVMFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKNLELVRKNMRRAYPRKASTEDTQVVVPKAYFSTPSVLIMEYVPGKMLVDALQEHMENVARERGMTPQDL 363
            +KVMFP VE MFRSDIKTMKDFCALAQPEHLVML+EVEKQFLTEFDFREEAKNLELVR NMR+A+ R        VVVP+A+ +TPS LIMEYVPGK LVDA+QEH +NVA  RGMT  +L
Sbjct:  182 VKVMFPGVETMFRSDIKTMKDFCALAQPEHLVMLKEVEKQFLTEFDFREEAKNLELVRNNMRKAWSR-------HVVVPEAFHATPSTLIMEYVPGKTLVDAIQEHFQNVAAARGMTVDEL 295          
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Match: A0A7S3YD06_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD06_HETAK)

HSP 1 Score: 115 bits (289), Expect = 4.890e-31
Identity = 67/121 (55.37%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    1 LKVMFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKNLELVRKNMRRAYPRKASTEDTQVVVPKAYFSTPSVLIMEYVPGKMLVDALQEHMENVARERGMTPQDL 363
            +KVM+P VE MFR DI TMK FCALAQPEHL  L E+EKQFLTEFD+R EA+NL  V  NMRRA+  K       VVVP+  +++  VLIM YV G  LVD L+ + E +A  +G T + L
Sbjct:    4 VKVMYPGVEGMFRGDIATMKRFCALAQPEHLPALGEIEKQFLTEFDYRREAENLRKVGDNMRRAWGHK-------VVVPEPIWASEEVLIMSYVEGVKLVDGLRRNAEALAWLKGTTAEAL 117          
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Match: W4H7P7_9STRA (Uncharacterized protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7P7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.290e-26
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 LKVMFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKNLELVRKNMRRAYPRKASTEDTQVVVPKAY--FSTPSVLIMEYVPGKMLVDALQEHMENVARERGMTPQDL 363
            +KV FP  EA FR+DI T+K F A+AQP HL  L E+EKQFLTEFD+R EA NL+LVR N+       AS    + VVPK+Y    T  VL+MEY+ G+ L+DA+ +H E VA E G+T  +L
Sbjct:  211 VKVQFPEAEANFRNDITTIKRFAAVAQPAHLPFLNEIEKQFLTEFDYRREADNLDLVRANLA------ASPYARKFVVPKSYPDLCTKEVLVMEYLQGRKLIDAIYDHFEIVASELGVTVDEL 327          
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Match: A0A024GVY5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GVY5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.930e-26
Identity = 59/121 (48.76%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    1 LKVMFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKNLELVRKNMRRAYPRKASTEDTQVVVPKAYFSTPSVLIMEYVPGKMLVDALQEHMENVARERGMTPQDL 363
            +KV  P+ E  FRSD+KT+K FC   QP HL  L+EVEKQF+TEF++ EEA NLE+VR N++++           V  PK  F T  VL+MEY+ GK L+  +QEH+E +A+ERGM+ ++L
Sbjct:   86 VKVQHPDAEHFFRSDMKTIKAFCRYFQPAHLPYLEEVEKQFMTEFNYHEEALNLEMVRDNLKKS----PFASRVAVPTPKIEFCTKEVLVMEYLRGKKLLVGIQEHLECIAKERGMSLEEL 202          
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Match: A0A024GUN7_9STRA (Uncharacterized protein (Fragment) n=9 Tax=Albugo candida TaxID=65357 RepID=A0A024GUN7_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.000e-26
Identity = 59/121 (48.76%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    1 LKVMFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKNLELVRKNMRRAYPRKASTEDTQVVVPKAYFSTPSVLIMEYVPGKMLVDALQEHMENVARERGMTPQDL 363
            +KV  P+ E  FRSD+KT+K FC   QP HL  L+EVEKQF+TEF++ EEA NLE+VR N++++           V  PK  F T  VL+MEY+ GK L+  +QEH+E +A+ERGM+ ++L
Sbjct:   86 VKVQHPDAEHFFRSDMKTIKAFCRYFQPAHLPYLEEVEKQFMTEFNYHEEALNLEMVRDNLKKS----PFASRVAVPTPKIEFCTKEVLVMEYLRGKKLLVGIQEHLECIAKERGMSLEEL 202          
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Match: A0A0G4FAN8_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FAN8_VITBC)

HSP 1 Score: 110 bits (275), Expect = 8.740e-26
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    1 LKVMFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKNLELVRKNMRRAYPRKASTEDTQVVVPKAY--FSTPSVLIMEYVPGKMLVDALQEHMENVARERGMTPQDLL 366
            +KV FP+ E MFR DIKT +DFC L QP+HL  L+EVEKQF+TEFD+R EA+NL+ +  N+   + RK       VV+P+ +    T  VL+MEYVPG  L DA++    ++A  R MT Q+L+
Sbjct:  185 VKVQFPDAERMFRIDIKTAQDFCRLVQPDHLPFLKEVEKQFMTEFDYRREAENLDEIADNVLPVWGRK-------VVIPRPFKHLCTREVLVMEYVPGTKLADAIKRQYTHIAASRNMTLQELI 301          
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Match: A0A6G0XWF5_9STRA (Protein kinase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWF5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.260e-25
Identity = 60/123 (48.78%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 LKVMFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKNLELVRKNMRRAYPRKASTEDTQVVVPKAY--FSTPSVLIMEYVPGKMLVDALQEHMENVARERGMTPQDL 363
            +K+ FP+ E  FR+DI T+K FC++AQP H+  L E+EKQF+TEFD+R EA NL  VR N+ R+  R       + VVPK Y    T  VL+MEY+ GK L+D + EH E +ARER  T + L
Sbjct:  211 VKIQFPDAEKHFRNDITTIKTFCSVAQPAHMPQLNEIEKQFMTEFDYRREADNLSEVRGNIERSPFR------DRFVVPKPYKELCTKDVLVMEYLKGKTLIDGINEHFETIARERHTTVEAL 327          
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Match: A0A8K1CNX3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNX3_PYTOL)

HSP 1 Score: 108 bits (271), Expect = 2.730e-25
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 LKVMFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKNLELVRKNMRRA-YPRKASTEDTQVVVPKAYFSTPSVLIMEYVPGKMLVDALQEHMENVARERGMTPQDL 363
            +KV  P+ E  FR DIKT+KDFC L QP HL  L+EVEKQF+TEFD+ EEAKNL  VR N+ ++ Y RK +     +  P     T  VL+ME++ G+ L+D +Q+H E +A ++G+T Q L
Sbjct:  176 VKVQHPDAETFFRWDIKTIKDFCRLFQPVHLPYLEEVEKQFMTEFDYNEEAKNLSTVRSNIAKSPYARKIA-----IPAPLTELCTKEVLVMEFLKGRKLLDGIQDHFEAIAADKGVTVQFL 292          
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Match: K3WDH8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDH8_GLOUD)

HSP 1 Score: 107 bits (268), Expect = 7.130e-25
Identity = 58/122 (47.54%), Postives = 83/122 (68.03%), Query Frame = 1
Query:    1 LKVMFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKNLELVRKNMRRA-YPRKASTEDTQVVVPKAYFSTPSVLIMEYVPGKMLVDALQEHMENVARERGMTPQDL 363
            +KV  P+ E  FR DIKT++DFC L QP HL  L+EVEKQF+TEFD+ EEAKNLE VR N+ ++ Y  K +  +     PK  + T  VL+ME++ G+ L+D + EH+E +A ++G+T + L
Sbjct:  177 VKVQHPDAEGFFRWDIKTIQDFCRLFQPAHLPYLEEVEKQFMTEFDYYEEAKNLETVRANIAKSPYASKIAIPE-----PKFEYCTKEVLVMEFLKGRKLLDGIHEHLEAIAADKGVTVEFL 293          
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Match: A0A7S0WVX5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WVX5_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 2.330e-24
Identity = 57/123 (46.34%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 LKVMFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKNLELVRKNMRRAYPRKASTEDTQVVVPKAYFSTPS--VLIMEYVPGKMLVDALQEHMENVARERGMTPQDL 363
            +KVM+P VE +FR D+K++KDF  LAQP+HL  L E+E+QFLTEFD+R+EA+NLE VR+N+   +  +       VV+PK      S  VL+M+++PGK L D ++EH   +A + G T ++L
Sbjct:  219 VKVMYPGVERLFRWDLKSLKDFVWLAQPQHLPELDEIERQFLTEFDYRKEAQNLEKVRQNVMPKWGHR-------VVIPKPVLDLCSEQVLVMQHLPGKKLTDGIREHYRKIASQVGRTLEEL 334          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64463.14034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQD9_ECTSI1.030e-4875.21Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S3YD06_HETAK4.890e-3155.37Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W4H7P7_9STRA1.290e-2652.03Uncharacterized protein n=12 Tax=Aphanomyces astac... [more]
A0A024GVY5_9STRA5.930e-2648.76Uncharacterized protein (Fragment) n=1 Tax=Albugo ... [more]
A0A024GUN7_9STRA6.000e-2648.76Uncharacterized protein (Fragment) n=9 Tax=Albugo ... [more]
A0A0G4FAN8_VITBC8.740e-2648.39Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6G0XWF5_9STRA2.260e-2548.78Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A8K1CNX3_PYTOL2.730e-2548.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WDH8_GLOUD7.130e-2547.54Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S0WVX5_9CHLO2.330e-2446.34Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64463contigH-elongata_contig64463:1263..1859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D7FQD9
KEGG koko:K08869
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size369
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64463.14034.1prot_H-elongata_contig64463.14034.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64463 1272..1859 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.7733138-UTR-H-elongata_contig64463:1262..12711622931030.7733138-UTR-H-elongata_contig64463:1262..1271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64463 1263..1271 +
1691679669.0832624-UTR-H-elongata_contig64463:1262..12711691679669.0832624-UTR-H-elongata_contig64463:1262..1271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64463 1263..1271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.7856555-CDS-H-elongata_contig64463:1271..14791622931030.7856555-CDS-H-elongata_contig64463:1271..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64463 1272..1479 +
1691679669.0941083-CDS-H-elongata_contig64463:1271..14791691679669.0941083-CDS-H-elongata_contig64463:1271..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64463 1272..1479 +
1622931030.8108008-CDS-H-elongata_contig64463:1707..18591622931030.8108008-CDS-H-elongata_contig64463:1707..1859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64463 1708..1859 +
1691679669.104217-CDS-H-elongata_contig64463:1707..18591691679669.104217-CDS-H-elongata_contig64463:1707..1859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64463 1708..1859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64463.14034.1

>prot_H-elongata_contig64463.14034.1 ID=prot_H-elongata_contig64463.14034.1|Name=mRNA_H-elongata_contig64463.14034.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MFPNVEAMFRSDIKTMKDFCALAQPEHLVMLQEVEKQFLTEFDFREEAKN
LELVRKNMRRAYPRKASTEDTQVVVPKAYFSTPSVLIMEYVPGKMLVDAL
QEHMENVARERGMTPQDLL*
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mRNA from alignment at H-elongata_contig64463:1263..1859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64463.14034.1 ID=mRNA_H-elongata_contig64463.14034.1|Name=mRNA_H-elongata_contig64463.14034.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=597bp|location=Sequence derived from alignment at H-elongata_contig64463:1263..1859+ (Himanthalia elongata Himel1 dioecious)
TTGAAGGTGATGTTCCCCAACGTAGAGGCGATGTTCAGGTCCGACATCAA GACCATGAAGGACTTCTGCGCCCTCGCGCAGCCCGAGCACCTGGTGATGC TCCAGGAGGTGGAGAAGCAGTTCTTGACGGAGTTCGACTTCCGAGAAGAG GCAAAGAACCTGGAGCTCGTCCGCAAGAACATGCGTAGAGCGTACCCGAG AAAGGCGAGCACAGAGGGTTTCCAATAATACGATGGCGTTAATGCTGCGC GGATTGCGGGGGGGAAGCGGGGGGGGGAGATATGTGAGTGGCGAAAACGC ACAGTGCACCTGAGTGCGGCACGGCTGAAGAGGTTTGTTCATCACGCTCC ACTGTTATTGCGGTGGTACGTTGCCATCCAACCAAATCCCTCTTACGTGC TGCTGCTGTGATGTGTGCGATTCGATCGGTGGCGAATGCGGTGAGACACA CAGGTGGTGGTGCCGAAGGCGTACTTCTCTACCCCGTCGGTGCTGATCAT GGAGTACGTGCCGGGTAAGATGCTGGTGGACGCGCTGCAGGAGCACATGG AGAACGTCGCCAGAGAGCGGGGGATGACTCCCCAAGATCTACTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig64463:1263..1859+

>mRNA_H-elongata_contig64463.14034.1 ID=mRNA_H-elongata_contig64463.14034.1|Name=mRNA_H-elongata_contig64463.14034.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig64463:1263..1859+ (Himanthalia elongata Himel1 dioecious)
ATGTTCCCCAACGTAGAGGCGATGTTCAGGTCCGACATCAAGACCATGAA
GGACTTCTGCGCCCTCGCGCAGCCCGAGCACCTGGTGATGCTCCAGGAGG
TGGAGAAGCAGTTCTTGACGGAGTTCGACTTCCGAGAAGAGGCAAAGAAC
CTGGAGCTCGTCCGCAAGAACATGCGTAGAGCGTACCCGAGAAAGGCGAG
CACAGAGGATGTTCCCCAACGTAGAGGCGATGTTCAGGTCCGACATCAAG
ACCATGAAGGACTTCTGCGCCCTCGCGCAGCCCGAGCACCTGGTGATGCT
CCAGGAGGTGGAGAAGCAGTTCTTGACGGAGTTCGACTTCCGAGAAGAGG
CAAAGAACCTGGAGCTCGTCCGCAAGAACATGCGTAGAGCGTACCCGAGA
AAGGCGAGCACAGAGGACACACAGGTGGTGGTGCCGAAGGCGTACTTCTC
TACCCCGTCGGTGCTGATCATGGAGTACGTGCCGGGTAAGATGCTGGTGG
ACGCGCTGCAGGAGCACATGGAGAACGTCGCCAGAGAGCGGGGGATGACT
CCCCAAGATCTACTGTGAACACACAGGTGGTGGTGCCGAAGGCGTACTTC
TCTACCCCGTCGGTGCTGATCATGGAGTACGTGCCGGGTAAGATGCTGGT
GGACGCGCTGCAGGAGCACATGGAGAACGTCGCCAGAGAGCGGGGGATGA
CTCCCCAAGATCTACTGTGA
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