prot_H-elongata_contig64455.14033.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64455.14033.1
Unique Nameprot_H-elongata_contig64455.14033.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length173
Homology
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: A0A6H5KBK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 4.060e-27
Identity = 90/171 (52.63%), Postives = 104/171 (60.82%), Query Frame = 0
Query:   11 GDIRHALLSLEMAVLGERVRSRESGVSEKPLD---SFSNSXXXXXXXXXXXXXXXGSSNSNRRFRILDGVSKKMAAVGTAGTEGTTGARDAFLTQFHALGKLLHAKRLPVEGKGEG---IEGLVGE-GEGG-QRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTDE 173
            GDIRHALL+L+M+V G R RS  +  ++       S          XXXXXXXXX       R +     SK       A   G TG RD FLTQFHALGKLL+AKR P +  G G     G  GE G+GG + RG LAFVPEEVLS+GGM+LDWALAFLQ HCVDF+TDE
Sbjct:  309 GDIRHALLNLQMSV-GGRGRSGSTAAAKAAAAVGRSNGGRGQAMLSXXXXXXXXXXXXXXXGRKKRXXXXSKSCXXXXXA---GGTGQRDTFLTQFHALGKLLYAKRNPPDSDGAGGWPTTGAGGERGDGGVEGRGPLAFVPEEVLSQGGMELDWALAFLQYHCVDFYTDE 475          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: D7FR72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR72_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 8.660e-24
Identity = 78/176 (44.32%), Postives = 92/176 (52.27%), Query Frame = 0
Query:    1 TCSLSLSHKTGDIRHALLSLEMAVLGERVRSRESGVSEKPLDSFSNSXXXXXXXXXXXXXXXGSSNSNRRFRILDGVSKKMAAVGTAGTEGTTGARDAFLTQFHALGKLLHAKRLPVEGKGEGIEGLVGEGEGG---QRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTDE 173
            +C   LS  TGDIRHALL+L+M+V G   R      +       SN          XXXXXX                           +     RD FLTQFHALGKLL+AKR+P +  G G     G G      + RG LAFVPE+VLS+GGM+LDWALAFLQ HCVDF+TDE
Sbjct:  169 SCRTLLSGPTGDIRHALLNLQMSVGG---RGGSGSTAAAAAVGRSNGGRGRAKRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-----RDTFLTQFHALGKLLYAKRVPPDSDGAGGWPTAGGGXXXXXXEGRGPLAFVPEDVLSQGGMELDWALAFLQYHCVDFYTDE 336          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: W7TS41_9STRA (Checkpoint protein Rad24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS41_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.450e-11
Identity = 50/162 (30.86%), Postives = 72/162 (44.44%), Query Frame = 0
Query:   11 GDIRHALLSLEMAVLGERVRSRESGVSEKPLDSFSNSXXXXXXXXXXXXXXXGSSNSNRRFRILDGVSKKMAAVGTAGTEGTTGARDAFLTQFHALGKLLHAKRLPVEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTD 172
            GD+RHA+L+L++ + G R        +    D+ ++S               G    +                           +D +++ FHALGK+LHAKRLP     E  E   GEG+    RGRL+FVPEEVL R  M+ +   AF+Q H +  F D
Sbjct:  587 GDLRHAILTLQLQLQGSRAAPNAPPRALARSDASASSSHLLRQCTGGRKGEGGRGGEDXXXXXXXXXXXXXXXXXXEAER-----KDTYMSSFHALGKVLHAKRLP-----ESDESRKGEGD---PRGRLSFVPEEVLKRCEMEAEGLSAFVQTHALALFGD 735          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: A0A7S2PU50_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PU50_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.460e-9
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 0
Query:   96 RDAFLTQFHALGKLLHAKRLPVEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTD 172
            RD  L+ FHALGKL+HAKR P+         +  +G     RG L F PE++LSR GM +  A++FL  HC D+FTD
Sbjct:  211 RDTKLSMFHALGKLIHAKRKPLCQDTMEETKMWDDG-----RGPLEFDPEDILSRSGMAVGSAVSFLSYHCPDYFTD 282          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: A0A7S1D583_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D583_CYCTE)

HSP 1 Score: 57.4 bits (137), Expect = 1.460e-6
Identity = 37/77 (48.05%), Postives = 42/77 (54.55%), Query Frame = 0
Query:   96 RDAFLTQFHALGKLLHAKRLPVEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTD 172
            R   LT FHALGKLL+AKR             +G       RG+L F PEEVL   GM LD A  FLQ + +DFFTD
Sbjct:   99 RAVSLTSFHALGKLLYAKRE---------NSTLG-------RGQLLFDPEEVLETSGMSLDSATTFLQGNGLDFFTD 159          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: B8C3M9_THAPS (RanBP2-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3M9_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 1.830e-6
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 0
Query:   96 RDAFLTQFHALGKLLHAKRLP-VEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTD 172
            RD  L+ FHALGKLL+AKR P  +      E   G       RG L FVPE+VL +  M    A++F+  H  DFFTD
Sbjct:  683 RDVKLSTFHALGKLLYAKRKPRSQDPYSTTEKRTGISAWDDGRGPLDFVPEQVLEKTDMATSSAISFIAYHSPDFFTD 760          
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Match: A0A7S1V8V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8V5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.720e-6
Identity = 36/91 (39.56%), Postives = 46/91 (50.55%), Query Frame = 0
Query:   85 GTAGTEGTTGARDAFLTQFHALGKLLHAKR---LPVEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSRGGMDLDWALAFLQCHCVDFFTD 172
            G+     +TG RD  L+ FHALGK+L+AKR   +PV   GE              R  L F PE+V+    + L  A+ FL  H  DFFTD
Sbjct:   68 GSREPSSSTGKRDTRLSTFHALGKILYAKRQTDVPVSEPGE--------------RPPLQFDPEKVIQHSDLYLTGAVGFLSFHSPDFFTD 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64455.14033.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KBK1_9PHAE4.060e-2752.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR72_ECTSI8.660e-2444.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TS41_9STRA7.450e-1130.86Checkpoint protein Rad24 n=2 Tax=Monodopsidaceae T... [more]
A0A7S2PU50_9STRA3.460e-946.75Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1D583_CYCTE1.460e-648.05Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B8C3M9_THAPS1.830e-644.87RanBP2-type domain-containing protein n=1 Tax=Thal... [more]
A0A7S1V8V5_9STRA3.720e-639.56Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004582Checkpoint protein Rad17/Rad24PANTHERPTHR12172CELL CYCLE CHECKPOINT PROTEIN RAD17coord: 10..172
NoneNo IPR availablePANTHERPTHR12172:SF0CELL CYCLE CHECKPOINT PROTEIN RAD17coord: 10..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64455contigH-elongata_contig64455:335..853 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64455.14033.1mRNA_H-elongata_contig64455.14033.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64455 335..853 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64455.14033.1 ID=prot_H-elongata_contig64455.14033.1|Name=mRNA_H-elongata_contig64455.14033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
TCSLSLSHKTGDIRHALLSLEMAVLGERVRSRESGVSEKPLDSFSNSSSS
SSSGHDQQQTKRGSSNSNRRFRILDGVSKKMAAVGTAGTEGTTGARDAFL
TQFHALGKLLHAKRLPVEGKGEGIEGLVGEGEGGQRRGRLAFVPEEVLSR
GGMDLDWALAFLQCHCVDFFTDE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004582Checkpoint_prot_Rad17_Rad24