mRNA_H-elongata_contig6440.14027.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Match: A0A6H5JDA2_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDA2_9PHAE) HSP 1 Score: 162 bits (410), Expect = 2.070e-45 Identity = 93/196 (47.45%), Postives = 117/196 (59.69%), Query Frame = 1
Query: 1 LGRLPGRR--LDLRRNDVVVFRPPAASRILFAEL---SAGIDDRLVG--GNSRSSLRVKQTWIRWRQHQRITLHKSLDFTKRVVALSGDQVAVTKGLLYINGQATDIFAGNLSAQRSPRRIKNLRCFKGNNEHQHYSEASYSLTATVVPKDHVWVLGDHRDVSFDSHVWGPLPIQNVIGCIRGRYWPVHRAAWFQR 567
LG+LPGR L LRR D+V+F PP ASR ++AEL ++G G+ R + T + +R L+ SLDFTKRVVA++GD VAV +G+LY+N D E Q + ASYS TVVPKDH+ VLGD+RD SFDSHVWGPLP++NVIGC R RYWPV+RAAW +R
Sbjct: 57 LGKLPGRPPGLGLRRGDIVIFSPPEASRNMYAELLRLASGATTATPNPVGDRRKGHILSLTRC---ERRRSPLNSSLDFTKRVVAVAGDHVAVRRGVLYVNESPAD-------------------------ERQRSARASYSFGPTVVPKDHIIVLGDNRDASFDSHVWGPLPVRNVIGCARARYWPVNRAAWLKR 224
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Match: I0YPI6_COCSC (LexA/Signal peptidase (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YPI6_COCSC) HSP 1 Score: 85.5 bits (210), Expect = 7.850e-17 Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 214 FTKRVVALSGDQVAVTKGLLYINGQATDIFAGNLSAQRSPRRIKNLRCFKGNNEHQHYSEASYSLTATVVPKDHVWVLGDHRDVSFDSHVWGPLPIQNVIGCIRGRYWPVHR 549
F KR+VA++GD V V G L++NGQ RC E Y + Y+L VP DHV+V+GD+R+ SFDSH+WGPLP +N+I YWP++R
Sbjct: 63 FIKRIVAVAGDTVEVKNGQLFVNGQP--------------------RC-----EKYIYEKPRYTLKPQTVPADHVFVMGDNRNNSFDSHIWGPLPQKNIIARAVFTYWPLNR 149
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Match: Q45NI0_MEDSA (Chloroplast thylakoidal processing peptidase (Fragment) n=1 Tax=Medicago sativa TaxID=3879 RepID=Q45NI0_MEDSA) HSP 1 Score: 83.2 bits (204), Expect = 5.860e-16 Identity = 46/109 (42.20%), Postives = 56/109 (51.38%), Query Frame = 1
Query: 214 FTKRVVALSGDQVAVTKGLLYINGQATDIFAGNLSAQRSPRRIKNLRCFKGNNEHQHYSEASYSLTATVVPKDHVWVLGDHRDVSFDSHVWGPLPIQNVIGCIRGRYWP 540
F KRVVA +GD V V G L +NG A D E +Y L VVPK HV+V+GD+R+ SFDSH WGPLPI+N++G RYWP
Sbjct: 47 FIKRVVAKAGDVVEVRDGKLLVNGVAED-------------------------EEFVLEPLAYELAPMVVPKGHVFVMGDNRNKSFDSHNWGPLPIENIVGRSMFRYWP 130
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Match: A0A8J9WNW0_9CHLO (Chloroplast processing peptidase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNW0_9CHLO) HSP 1 Score: 86.7 bits (213), Expect = 8.820e-16 Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1
Query: 214 FTKRVVALSGDQVAVTKGLLYINGQATDIFAGNLSAQRSPRRIKNLRCFKGNNEHQHYSEASYSLTATVVPKDHVWVLGDHRDVSFDSHVWGPLPIQNVIGCIRGRYWPVHR 549
F KR+VA+ GD V V G L++NG+ RC K NE + +Y+L VP +HV+V+GD+R+ SFDSH+WGPLP++NVIG YWP+ R
Sbjct: 240 FIKRIVAVGGDTVEVKNGQLFVNGEP--------------------RCEKYINE-----KPAYTLPLVKVPPEHVFVMGDNRNNSFDSHIWGPLPVKNVIGRAVFTYWPLTR 326
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Match: A0A7S4DYH9_9EUKA (Mitochondrial inner membrane protease subunit n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DYH9_9EUKA) HSP 1 Score: 84.3 bits (207), Expect = 3.260e-15 Identity = 48/125 (38.40%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 214 FTKRVVALSGDQVAVTKGLLYINGQATDIFAGNLSAQRSPRRIKNLRCFKGNNEHQHYSEASYSLTATVVPKDHVWVLGDHRDVSFDSHVWGPLPIQNVIGCIRGRYWPVHRAAWFQRDSASSVQ 588
F KR+VA GD V V++G L +NG R IK+ SYSL VPK +V+V+GD+RD S+DSH+WGPLP++N+IG +YWP +AW + A S++
Sbjct: 196 FIKRIVATEGDTVEVSRGRLIVNGIV-----------REEPYIKDGAI------------KSYSLDKVTVPKGYVFVMGDNRDNSYDSHIWGPLPVKNIIGRASWKYWPP--SAWGEVTRADSLK 295
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Match: A0A438DS05_VITVI (Chloroplast processing peptidase n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DS05_VITVI) HSP 1 Score: 81.3 bits (199), Expect = 5.810e-15 Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query: 214 FTKRVVALSGDQVAVTKGLLYINGQATDIFAGNLSAQRSPRRIKNLRCFKGNNEHQHYSEASYSLTATVVPKDHVWVLGDHRDVSFDSHVWGPLPIQNVIGCIRGRYWPVHRAAWFQRDSASSV 585
F KR+VA GD V V +G L +NG NE+ + SYS+T VP++ V+V+GD+R+ S+DSHVWGPLP +N++G RYWP +R D+ +V
Sbjct: 53 FIKRIVAKEGDTVEVREGKLIVNGVVR-------------------------NENFIFEPPSYSMTPIHVPENAVFVMGDNRNNSYDSHVWGPLPAKNILGRSIFRYWPPNRIGGTVSDAGCAV 151
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Match: UPI0016800C66 (Signal peptidase I n=2 Tax=Cyanobium sp. FACHB-13342 TaxID=2692793 RepID=UPI0016800C66) HSP 1 Score: 81.6 bits (200), Expect = 7.820e-15 Identity = 45/115 (39.13%), Postives = 59/115 (51.30%), Query Frame = 1
Query: 220 KRVVALSGDQVAVTKGLLYINGQATDIFAGNLSAQRSPRRIKNLRCFKGNNEHQHYSEASYSLTATVVPKDHVWVLGDHRDVSFDSHVWGPLPIQNVIGCIRGRYWPVHRAAWFQ 564
KRVVA +GD++ V +G+L+ NG I + SA+ YSL VP DH+ VLGD+R+ S DSH+WGPLP VIG RYWP +R W +
Sbjct: 107 KRVVAQAGDRIEVRQGVLWRNGSPAPI---DWSAE----------------------PMDYSLAPLTVPPDHLMVLGDNRNASLDSHLWGPLPRDAVIGTAVLRYWPANRMGWLR 196
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Match: A0A445DXM4_ARAHY (Peptidase_S26 domain-containing protein n=5 Tax=Arachis TaxID=3817 RepID=A0A445DXM4_ARAHY) HSP 1 Score: 83.2 bits (204), Expect = 1.320e-14 Identity = 48/131 (36.64%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 214 FTKRVVALSGDQVAVTKGLLYING-QATDIFAGNLSAQRSPRRIKNLRCFKGNNEHQHYSEA-SYSLTATVVPKDHVWVLGDHRDVSFDSHVWGPLPIQNVIGCIRGRYWPVHRAAWFQRDSASSVQARAD 600
F KR++A GD V V KG L +NG + ++ F + + + C K +SE S L VP+++V+V+GD+R+ S+DSHVWGPLP +N+IG RYWP +R A + V+ + D
Sbjct: 203 FIKRIIAKGGDIVEVRKGRLIVNGVERSEKFILEPPSYEMKPTVSSPFCIK-----TQFSETPSIPLCNVRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSEDTCPVETKQD 328
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Match: A0A2P6V7F2_9CHLO (Chloroplast processing peptidase-like isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V7F2_9CHLO) HSP 1 Score: 82.8 bits (203), Expect = 1.370e-14 Identity = 46/126 (36.51%), Postives = 63/126 (50.00%), Query Frame = 1
Query: 214 FTKRVVALSGDQVAVTKGLLYINGQATDIFAGNLSAQRSPRRIKNLRCFKGNNEHQHYSEASYSLTATVVPKDHVWVLGDHRDVSFDSHVWGPLPIQNVIGCIRGRYWPVHRAAWFQRDSASSVQA 591
F KR+VA++GD V V G L +NGQ+ E Y Y L VP+ HV+V+GD+R+ S+DSH+WGPLP +N+IG +YWP+ + W S VQA
Sbjct: 192 FIKRIVAVAGDTVEVRGGRLIVNGQSRT-------------------------EPYIYEMPKYELPLLTVPEGHVFVMGDNRNNSYDSHIWGPLPAENIIGRACWKYWPLTK--WGGLPDYSDVQA 290
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Match: A0A1D1ZWR9_AUXPR (Peptidase_S26 domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZWR9_AUXPR) HSP 1 Score: 81.3 bits (199), Expect = 1.490e-14 Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 214 FTKRVVALSGDQVAVTKGLLYINGQATDIFAGNLSAQRSPRRIKNLRCFKGNNEHQHYSEASYSLTATVVPKDHVWVLGDHRDVSFDSHVWGPLPIQNVIGCIRGRYWPV 543
F KRVVA++GD V V KG L++NG+ R++ +Y + + VP HV+V+GD+R+ S+DSH+WGPLP++NV+G +YWP+
Sbjct: 116 FVKRVVAVAGDTVEVKKGALFVNGEE---------------RVEEYLA----------ERPAYEMESLTVPPRHVFVMGDNRNNSYDSHLWGPLPLENVVGRAVWKYWPL 200 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6440.14027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6440.14027.1 >prot_H-elongata_contig6440.14027.1 ID=prot_H-elongata_contig6440.14027.1|Name=mRNA_H-elongata_contig6440.14027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp LGRLPGRRLDLRRNDVVVFRPPAASRILFAELSAGIDDRLVGGNSRSSLRback to top mRNA from alignment at H-elongata_contig6440:2824..4167+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6440.14027.1 ID=mRNA_H-elongata_contig6440.14027.1|Name=mRNA_H-elongata_contig6440.14027.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1344bp|location=Sequence derived from alignment at H-elongata_contig6440:2824..4167+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6440:2824..4167+ >mRNA_H-elongata_contig6440.14027.1 ID=mRNA_H-elongata_contig6440.14027.1|Name=mRNA_H-elongata_contig6440.14027.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig6440:2824..4167+ (Himanthalia elongata Himel1 dioecious)back to top |