prot_H-elongata_contig6437.14024.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6437.14024.1
Unique Nameprot_H-elongata_contig6437.14024.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length708
Homology
BLAST of mRNA_H-elongata_contig6437.14024.1 vs. uniprot
Match: D8LTU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU9_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 7.300e-85
Identity = 270/805 (33.54%), Postives = 375/805 (46.58%), Query Frame = 0
Query:   15 DWYVVSGGADRTVIHWSLLGFVGDTREVSE---QENATLRKTGVYEVTRKSAAA----ITASNDRQYHREDSAIDRSLSVTHVMVVQFPAYEAPSPIHT---TITAAAEAVAAAASITLMRQKPN-QAQSEDTTALLCEYGNAARPSKEGGNLGSKHVCLAVSGGLISIMEIVEPLWHVGWTGSRSK-ELT--------KEREILCMTRMPHYSLTDKGTESKLNLGHGSIPGFVVMSEGGWLGWYQDGIRNVELVSQTELTSPDKSN--NSLSVRAKPTC--IVPMLASPRKPRHGEQVSTLNASMRMDITGRPPSSSSQTRALVSRQDIEVVQNIIVGYSDGSIALAPMYLVASPSDSC--------------------RQLNLPRAATKIMTRVDMDGGMAVEAGITALCSISGHLVVVGDSEGRMSLWETSAS-PATGSPLLWEDKAAHSGPIIAIHRVQESPRVITTPTNPANLVD----NLPLLPSPKPHEWVVSAGSGGAIRVWKLQSRRQPEVARSNRPV----GLEFFATVMTNLSITSFSCFLVSPPG-------------GGSGGRGHGRIDD---KTEPYYLSSKDTENNTALGKRQMEKQGGQQRLYCVVGSDKGFVQASGIDFSEGRAVTGQMMWSQKIHNRPVTVMD----------------ACGIDGWAIRSPGVPTSH--------YVNTAKKKRD------------SPSVAMMFGQTRDEG------NHAPGCLILSGSLDRSLCVFRARYDEDFYLLRRLNLGCIPRGLPSALFVELQAEAGAD 708
            DW ++SGG D TV H S++G +   RE +    +    LR  G YE +RK+ +A    ++A++  +      A +R   V+H+M ++  A E      +   T  AAA+      S+   +   N QA ++ ++    E   +AR  K GG    +  C+AVSGGLIS++E+VEPL HVGW G  +  +LT        K+RE+  M R+P  S+     E  ++    +   F+VM + GW G         ELVS+  LT+P  S+   + +  +  TC  + P+ A  R     + V     S +       P S+                 I+VGYSDGSIA A +    +PS S                     R +   R               A+EA ITALC +S  LVV GDS+GR++LW TS++ P  GSPLLWED+ AH G +IAI RV+ES     TP+ PA+ +           + +P EWVVS GSGG IRVW + SR  P  A   R      GLEF AT++TN SI SFSC L+ P G             GG+GG G  + +D   +        +   +    G  Q E  GG  RLYCV GSD GFVQA  +       V GQ +WSQK H+  VT MD                  G++  +  +  VP  H         V+  K+K +            SP      G+    G      N    CL+LS +LDR+LCVFRAR+    +LLRRLN+ C PRGLP ALFV +  E  ++
Sbjct:  183 DWSIISGGGDGTVAHLSVVG-LASAREAASGVAEAGVELRMIGDYEASRKTRSAHYTSVSATSGDRVGNGRFAANRRPGVSHIMAIRLSAGEEAGVFGSGVDTRRAAADTTGRGTSLCTGKGGENFQAPAKGSS--WAEVIASAR-GKSGGGGSGRDFCVAVSGGLISVLEVVEPLQHVGWVGRETTADLTAGVYGGGGKKREVARMMRVP--SVWRSAREEDIDC---AADDFMVMCDDGWFGXXXXXXGRFELVSRLTLTAPGGSHFAEATAAGSDTTCFAVCPIPAVGRNTSANDSV----VSCKYAFNAGAPESA----------------RIVVGYSDGSIACASL---PAPSSSTNHPLPTFGTGSRHHERERGERTVRRLRXXXXXXXXXXXXXXXAIEAAITALCPLSAPLVVAGDSDGRLALWTTSSALPPDGSPLLWEDRNAHRGVVIAIERVKES-----TPSTPASGLSCNGSTHAAHRTSRPREWVVSVGSGGEIRVWNVPSR-WPGGAAVGRGRDTGGGLEFRATLLTNSSICSFSCALLLPLGDACIGDGGGINGCGGNGGFGQVQCEDHEREKSQEQGEKRRCRSGARPGAGQAEATGG--RLYCVAGSDNGFVQAWELSLDGEEGVGGQPLWSQKTHDAAVTKMDMWELYPSDPDGPKARKTTGLNISSSTTTSVPEIHAKGPREALVVHHKKEKENNAGLESNEAPPPSPPHCQAVGKGGRRGAAKLVENSVTECLVLSAALDRTLCVFRARHGRALHLLRRLNVPCSPRGLPGALFVGIPVERASE 947          
BLAST of mRNA_H-elongata_contig6437.14024.1 vs. uniprot
Match: A0A6H5JZI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI3_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 5.360e-75
Identity = 256/816 (31.37%), Postives = 364/816 (44.61%), Query Frame = 0
Query:   15 DWYVVSGGADRTVIHWSLLGFVGDTREVSE---QENATLRKTGVYEVTRKSAAAITASND-RQYHREDS-------------AIDRSLSVTHVMVVQFPAYEAPSPIHTTITAAAEAVAAAASITLMRQKPNQAQSEDTTALLCEYGN-----AARPSKEGGNLGSKHVCLAVSGGLISIMEIVEPLWHVGWTGSRSKE-LT------KEREILCMTRMPHYSLTDKGTESKLNLGHGSIPGFVVMSEGGWLGWYQDGIRNVELVSQTELTSPDKSNNSLSVRA--KPTC--IVPMLASPRKPRHGEQVSTLNASMRMDITGRPPSSSSQTRALVSRQDIEVVQNIIVGYSDGSIALAPMYLVASPSDSC--------------------RQLNLPRAATKIMTRVDMDGGMAVEAGITALCSISGHLVVVGDSEGRMSLWETSAS-PATGS--PLLWEDKAAHSGPIIAIHRVQESPRVITTPTNPANLVDNLPLLP-SPKPHEWVVSAGSGGAIRVWKLQSRRQPEVARSNR----PVGLEFFATVMTNLSITSFSCFLVSPPG-------------GGSGGRGHGRIDDKTEPYYLSSKDTENNTALGKRQMEKQGGQQ----------RLYCVVGSDKGFVQASGIDFSEGRAVTGQMMWSQKIHNRPVTVMDACGI------DGWAIRSPGVPTSHYVNTAKKK--RDSPSVAMMFGQTRDEGNHA----------------------------------PGCLILSGSLDRSLCVFRARYDEDFYLLRRLNLGCIPRGLPSALFVELQAE 704
            DW ++SGG D TV+H S++G +   RE +    +    LR  G YEV  ++     AS   R  H                 A +R   V+H+M ++  A E    + + + +      AAA  T     P+  +  +      +  +     A+   K GG    K  C+AVSGGLIS++E+VEPL HVGW G  +   LT      K+RE+  + R+P  S+     E  ++     +   +VM + GW G         ELVS+  LT+P   +++ +  A    TC  + P+    R     + V +   S+           S   R             IIVGYSDGSIA AP+    +PS S                     R +   R A             A+EA ITALC +   LVV GDS+GR++LW TS++ P  G   PLLWED+ AH G +IAI RV+E+   ++TP    +   N      + +P E VVS GSGG IRVW + SR  P  A + R      GLEF AT++TN SI SFSC L+ P G             GG+GG      +D+        K ++    +G+++  + G +           RLYCV GSD GFVQA  +       V G+ +WSQK H+  VT MD   +      D  A ++ G+  S    T+  +     P  A++  Q +++ NHA                                    CL+LS +LDR+LCVFRAR+    +LLRRLN+ C  RGLP ALFV +  E
Sbjct:  175 DWSIMSGGGDGTVVHLSVVG-LASAREAASGVAEAGVELRMIGDYEVRNQTIGGRGASRKTRSAHYPSGSATSGDRVGNGRFAANRRPGVSHIMAIRLSAGEEAGVLGSGVYSRG----AAADTTGRGMSPSTGKGGENFQAPAKGSSWAEVIASARGKSGGGGSGKDFCVAVSGGLISVLEVVEPLQHVGWVGRETTAALTSGGSGGKKREVARIARVP--SVWRSAREEDVDCAADDL---MVMCDDGWFGXXXXXXGRFELVSRLTLTAPGSRHSAEATAAGSDTTCFAVCPIPVVSRNTSANDSVVSCKYSLYAGA-------SEPAR-------------IIVGYSDGSIACAPL---PAPSSSTNHPLPTFGTGSRHHEGARGERTVRRLRRAGXXXXXXXXXXXAAIEAAITALCPLLAPLVVAGDSDGRLALWTTSSALPPDGRQVPLLWEDRNAHRGVVIAIKRVEEA--TLSTPAAGLSCDGNTHAARRTSRPRERVVSVGSGGEIRVWNVPSR-WPGGAAAGRGRDTEGGLEFCATLLTNSSICSFSCALLLPSGDACIGNGGGINGCGGNGGFCQVHCEDQER------KKSQEQGTMGEKRRCRPGARPGAGQAEATGWRLYCVAGSDNGFVQAWELSLDGEEGVGGEPLWSQKTHDAAVTEMDVWELYPSDPDDPKARKTTGLNISSSTTTSVSEIHAKGPRAALVVNQQKEKENHAGLESNEAPPRPPPHCPAVGKGGRRGAAKLIENSSTECLVLSAALDRTLCVFRARHGRGLHLLRRLNVPCSLRGLPGALFVGIPVE 948          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6437.14024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTU9_ECTSI7.300e-8533.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZI3_9PHAE5.360e-7531.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 706..708
NoneNo IPR availablePANTHERPTHR19855WD40 REPEAT PROTEIN 12, 37coord: 5..673
NoneNo IPR availablePANTHERPTHR19855:SF11RIBOSOME BIOGENESIS PROTEIN WDR12coord: 5..673
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 7..681

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6437contigH-elongata_contig6437:3790..7274 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6437.14024.1mRNA_H-elongata_contig6437.14024.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6437 1310..7274 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6437.14024.1 ID=prot_H-elongata_contig6437.14024.1|Name=mRNA_H-elongata_contig6437.14024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=708bp
MASRSTSVHCNDAGDWYVVSGGADRTVIHWSLLGFVGDTREVSEQENATL
RKTGVYEVTRKSAAAITASNDRQYHREDSAIDRSLSVTHVMVVQFPAYEA
PSPIHTTITAAAEAVAAAASITLMRQKPNQAQSEDTTALLCEYGNAARPS
KEGGNLGSKHVCLAVSGGLISIMEIVEPLWHVGWTGSRSKELTKEREILC
MTRMPHYSLTDKGTESKLNLGHGSIPGFVVMSEGGWLGWYQDGIRNVELV
SQTELTSPDKSNNSLSVRAKPTCIVPMLASPRKPRHGEQVSTLNASMRMD
ITGRPPSSSSQTRALVSRQDIEVVQNIIVGYSDGSIALAPMYLVASPSDS
CRQLNLPRAATKIMTRVDMDGGMAVEAGITALCSISGHLVVVGDSEGRMS
LWETSASPATGSPLLWEDKAAHSGPIIAIHRVQESPRVITTPTNPANLVD
NLPLLPSPKPHEWVVSAGSGGAIRVWKLQSRRQPEVARSNRPVGLEFFAT
VMTNLSITSFSCFLVSPPGGGSGGRGHGRIDDKTEPYYLSSKDTENNTAL
GKRQMEKQGGQQRLYCVVGSDKGFVQASGIDFSEGRAVTGQMMWSQKIHN
RPVTVMDACGIDGWAIRSPGVPTSHYVNTAKKKRDSPSVAMMFGQTRDEG
NHAPGCLILSGSLDRSLCVFRARYDEDFYLLRRLNLGCIPRGLPSALFVE
LQAEAGAD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf