mRNA_H-elongata_contig64293.14018.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64293.14018.1
Unique NamemRNA_H-elongata_contig64293.14018.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Match: A0A6H5KJ27_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ27_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 8.750e-11
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 SQSGVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV 120
            SQ GV APLE FKTA KGWGVRA  TI+  +YICSYAGE+
Sbjct:  357 SQMGVTAPLEAFKTATKGWGVRARGTIQEGQYICSYAGEM 396
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BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Match: D7G1M9_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M9_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.060e-9
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   10 GVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV 120
            GV APLE FKTA KGWGVRA  TI+  +YICSYAGE+
Sbjct:  534 GVTAPLEAFKTATKGWGVRARGTIQEGQYICSYAGEM 570
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BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Match: A0A8J5RNP9_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5RNP9_ZIZPA)

HSP 1 Score: 59.3 bits (142), Expect = 3.710e-9
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 SQSGVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV 120
            SQ G+R PLE+FKTAN+GWGVR+ ++I    +IC Y GEV
Sbjct:  913 SQHGIRIPLEIFKTANRGWGVRSLSSISSGSFICEYTGEV 952
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BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Match: A0A0E0ERE2_9ORYZ (Uncharacterized protein n=11 Tax=Oryza TaxID=4527 RepID=A0A0E0ERE2_9ORYZ)

HSP 1 Score: 58.9 bits (141), Expect = 5.070e-9
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 SQSGVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV 120
            SQ G++ PLE+FKT NKGWGVR+ ++I    ++C YAGEV
Sbjct: 1024 SQHGIKIPLEIFKTGNKGWGVRSLSSISSGSFVCEYAGEV 1063
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BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Match: B8BET7_ORYSI (Uncharacterized protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8BET7_ORYSI)

HSP 1 Score: 58.9 bits (141), Expect = 5.070e-9
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 SQSGVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV 120
            SQ G++ PLE+FKT NKGWGVR+ ++I    ++C YAGEV
Sbjct:  735 SQHGIKIPLEIFKTGNKGWGVRSLSSISSGSFVCEYAGEV 774
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BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Match: UPI00168D3C5A (histone-lysine N-methyltransferase SETMAR isoform X1 n=3 Tax=Pteropodinae TaxID=77225 RepID=UPI00168D3C5A)

HSP 1 Score: 57.0 bits (136), Expect = 2.190e-8
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    4 QSGVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV 120
            Q G+RAPL+VF+TA KGWGVRA A +    ++C YAGEV
Sbjct:  121 QRGLRAPLQVFRTAAKGWGVRALARVPRGRFVCQYAGEV 159
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BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Match: A0A5J9TDG0_9POAL (Uncharacterized protein (Fragment) n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TDG0_9POAL)

HSP 1 Score: 57.0 bits (136), Expect = 2.420e-8
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 SQSGVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV 120
            SQ GV+ PLE+FKT N+GWGVR+ ++I    +IC YAGE+
Sbjct: 1132 SQHGVKIPLEIFKTGNRGWGVRSLSSIPSGSFICEYAGEL 1171
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BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Match: A0A7J6WLE6_THATH (Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WLE6_THATH)

HSP 1 Score: 55.8 bits (133), Expect = 6.210e-8
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 SQSGVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV 120
            SQ G++ PLEVFKT NKGWGVR  ++I    +IC Y GE+
Sbjct:  399 SQRGIKLPLEVFKTRNKGWGVRCLSSIPSGSFICEYTGEL 438
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BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Match: A0A6D2JHU9_9BRAS (Uncharacterized protein n=5 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2JHU9_9BRAS)

HSP 1 Score: 54.7 bits (130), Expect = 1.590e-7
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    4 QSGVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV 120
            Q+GV+A LEVFKTAN+GWG+R+   I    +IC YAGE+
Sbjct:  495 QTGVKARLEVFKTANRGWGLRSWDAIRAGTFICEYAGEI 533
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BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Match: A0A2G5DEX7_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DEX7_AQUCA)

HSP 1 Score: 54.3 bits (129), Expect = 2.170e-7
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 SQSGVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV 120
            SQ G++ PLEVFKT N+GWGVR  ++I    +IC Y GE+
Sbjct:  400 SQHGIKLPLEVFKTKNRGWGVRCLSSIPSGTFICEYTGEL 439
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64293.14018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ27_9PHAE8.750e-1172.50SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1M9_ECTSI1.060e-972.97SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8J5RNP9_ZIZPA3.710e-960.00Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A0E0ERE2_9ORYZ5.070e-957.50Uncharacterized protein n=11 Tax=Oryza TaxID=4527 ... [more]
B8BET7_ORYSI5.070e-957.50Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
UPI00168D3C5A2.190e-861.54histone-lysine N-methyltransferase SETMAR isoform ... [more]
A0A5J9TDG0_9POAL2.420e-857.50Uncharacterized protein (Fragment) n=2 Tax=Eragros... [more]
A0A7J6WLE6_THATH6.210e-857.50Histone-lysine N-methyltransferase, H3 lysine-9 sp... [more]
A0A6D2JHU9_9BRAS1.590e-758.97Uncharacterized protein n=5 Tax=Coluteocarpeae Tax... [more]
A0A2G5DEX7_AQUCA2.170e-755.00Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64293contigH-elongata_contig64293:2207..2329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog2880.D7G1M9
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11420,ko:K11433
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04211,map00310,map04211
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.8280647-CDS-H-elongata_contig64293:2206..23291622931028.8280647-CDS-H-elongata_contig64293:2206..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64293 2207..2329 -
1691679668.2550967-CDS-H-elongata_contig64293:2206..23291691679668.2550967-CDS-H-elongata_contig64293:2206..2329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64293 2207..2329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64293.14018.1prot_H-elongata_contig64293.14018.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64293 2207..2329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64293.14018.1

>prot_H-elongata_contig64293.14018.1 ID=prot_H-elongata_contig64293.14018.1|Name=mRNA_H-elongata_contig64293.14018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
SQSGVRAPLEVFKTANKGWGVRATATIELEEYICSYAGEV*
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mRNA from alignment at H-elongata_contig64293:2207..2329-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64293.14018.1 ID=mRNA_H-elongata_contig64293.14018.1|Name=mRNA_H-elongata_contig64293.14018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig64293:2207..2329- (Himanthalia elongata Himel1 dioecious)
TCGCAGTCAGGGGTCAGAGCTCCGCTGGAGGTGTTCAAGACAGCCAACAA
AGGCTGGGGGGTGCGGGCCACGGCAACCATCGAGCTCGAAGAATATATCT
GTTCCTACGCTGGCGAGGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig64293:2207..2329-

>mRNA_H-elongata_contig64293.14018.1 ID=mRNA_H-elongata_contig64293.14018.1|Name=mRNA_H-elongata_contig64293.14018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig64293:2207..2329- (Himanthalia elongata Himel1 dioecious)
TCGCAGTCAGGGGTCAGAGCTCCGCTGGAGGTGTTCAAGACAGCCAACAA
AGGCTGGGGGGTGCGGGCCACGGCAACCATCGAGCTCGAAGAATATATCT
GTTCCTACGCTGGCGAGGTGTGATCGCAGTCAGGGGTCAGAGCTCCGCTG
GAGGTGTTCAAGACAGCCAACAAAGGCTGGGGGGTGCGGGCCACGGCAAC
CATCGAGCTCGAAGAATATATCTGTTCCTACGCTGGCGAGGTGTGA
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