prot_H-elongata_contig64284.14015.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64284.14015.1
Unique Nameprot_H-elongata_contig64284.14015.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length180
Homology
[Close]
BLAST of mRNA_H-elongata_contig64284.14015.1 vs. uniprot
Match: A0A6H5KPQ4_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ4_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 3.700e-105
Identity = 141/185 (76.22%), Postives = 160/185 (86.49%), Query Frame = 0 
Query:    1 GVEIVEDRYEGAVTLHKAFKKAVVSENEFAERMHPDVVQDKVHLFK------WKHPEVRDADFIFFNNSSGWFNNSKALNNPDEHSLEARLLHRLKNDPSNNGKVLITLEHIAEWQPDCWERRTYKYNCETKRAATYAANELEFWEYTVVSQWECPGCTSLNTDAVNDCMVCGTYCRNKRKSKRL 179
            G+EIVEDR+ GAV LH AF+KAV +E +    +HPDVV+ KVHLFK      W++PEVRDADFIFFNNSSGWFNNSKALNNPDEHSLE+RLL +LKNDP NNGK+L+TLEHIAEWQP CWERR+YKY+  T+RAATYAA ELEFWEYTVVSQWECPGCTS+N+DAVNDC+VCGTYC  KR SKRL
Sbjct:   37 GIEIVEDRFAGAVELHSAFQKAVFAERDLGALLHPDVVEQKVHLFKGCFLEQWENPEVRDADFIFFNNSSGWFNNSKALNNPDEHSLESRLLKKLKNDPRNNGKILVTLEHIAEWQPTCWERRSYKYSDNTRRAATYAAKELEFWEYTVVSQWECPGCTSINSDAVNDCVVCGTYCSGKRNSKRL 221
[Close]
BLAST of mRNA_H-elongata_contig64284.14015.1 vs. uniprot
Match: D7FU81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU81_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.480e-28
Identity = 64/124 (51.61%), Postives = 81/124 (65.32%), Query Frame = 0 
Query:    1 GVEIVEDRYEGAVTLHKAFKKAVVSENEFAERMHPDVVQDKVHLFKWKHPEVRDADFIFFNNSSGWFNNSKALNNPDEHSLEAR--LLHRLKNDPSNNGKVLITLEHIAEWQPDCWERRTYKYN 122
            G+EIVEDR+ GAV LH AF+KAV +E +    +HPDVV+ KVHLFK      +         +   F+++ A       S  AR  LL +LKNDP NNGK+L+TLEHIAEWQP CWERR+YKY+
Sbjct:  639 GIEIVEDRFAGAVELHSAFQKAVFAERDLGALLHPDVVEQKVHLFKSPRAVSKARGRPPRLGTRTSFSSTIAAAG----STTARRWLLKKLKNDPRNNGKILVTLEHIAEWQPTCWERRSYKYS 758
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64284.14015.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPQ4_9PHAE3.700e-10576.22RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7FU81_ECTSI6.480e-2851.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 145..169
e-value: 0.0077
score: 25.4
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 147..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64284contigH-elongata_contig64284:320..2944 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64284.14015.1mRNA_H-elongata_contig64284.14015.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64284 320..2944 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64284.14015.1 ID=prot_H-elongata_contig64284.14015.1|Name=mRNA_H-elongata_contig64284.14015.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
GVEIVEDRYEGAVTLHKAFKKAVVSENEFAERMHPDVVQDKVHLFKWKHP
EVRDADFIFFNNSSGWFNNSKALNNPDEHSLEARLLHRLKNDPSNNGKVL
ITLEHIAEWQPDCWERRTYKYNCETKRAATYAANELEFWEYTVVSQWECP
GCTSLNTDAVNDCMVCGTYCRNKRKSKRL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2