mRNA_H-elongata_contig64262.14013.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64262.14013.1
Unique NamemRNA_H-elongata_contig64262.14013.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: B9S233_RICCO (HSF_DOMAIN domain-containing protein n=1 Tax=Ricinus communis TaxID=3988 RepID=B9S233_RICCO)

HSP 1 Score: 75.5 bits (184), Expect = 2.750e-16
Identity = 36/75 (48.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 MQLSPVAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNH-GECKW 219
            M+ + V PF+SK+Y +V++ ST+ +VSWSSSD  ++F++ +VG FQ+++LP++F H N++SFVRQLN + G   W
Sbjct:    1 MESNTVPPFLSKSYDMVDDPSTNSVVSWSSSD--NSFIVWNVGEFQKELLPKYFKHNNFSSFVRQLNTYVGLVAW 73          
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: UPI0007721EB2 (heat stress transcription factor A-1b isoform X2 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI0007721EB2)

HSP 1 Score: 77.4 bits (189), Expect = 6.830e-15
Identity = 35/70 (50.00%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 MQLSPVAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHG 207
            M+ + V PF+SK+Y +V++ ST+ +VSWSSSD  ++F++ +VG FQ+++LP++F H N++SFVRQLN +G
Sbjct:    1 MESNTVPPFLSKSYDMVDDPSTNSVVSWSSSD--NSFIVWNVGEFQKELLPKYFKHNNFSSFVRQLNTYG 68          
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A0V0GSL0_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GSL0_SOLCH)

HSP 1 Score: 70.9 bits (172), Expect = 5.410e-14
Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   13 PVAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHGECK 216
            P+ PF+SK Y +V++ STD +VSWS S+  ++FV+ +V  F   +LP++F H N++SFVRQLN +G  K
Sbjct:    6 PLPPFLSKTYDMVDDRSTDSVVSWSKSN--NSFVVWNVPEFSRDILPKYFKHNNFSSFVRQLNTYGYKK 72          
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: W9S462_9ROSA (HSF_DOMAIN domain-containing protein n=2 Tax=Morus notabilis TaxID=981085 RepID=W9S462_9ROSA)

HSP 1 Score: 68.9 bits (167), Expect = 1.400e-13
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   22 PFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHGECKWAK 225
            PF+SK Y +V++ STD IVSWS  D  ++FV+ +  +F   +LP+FF H N++SFVRQLN +G  + +K
Sbjct:   19 PFLSKTYDMVDDPSTDSIVSWS--DHNNSFVVWNAPLFARDLLPKFFKHNNFSSFVRQLNTYGRKELSK 85          
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A2P2JGW8_RHIMU (HSF_DOMAIN domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JGW8_RHIMU)

HSP 1 Score: 67.8 bits (164), Expect = 3.430e-13
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   16 VAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLN 198
            +APF+ K Y +V++ESTD I+ WS S  +D+FVI+ +  F  Q+LP++F H N++SF+RQLN
Sbjct:   12 IAPFLKKCYEMVDDESTDSIICWSQS--KDSFVIRDMTEFSVQLLPKYFKHNNFSSFIRQLN 71          
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A7C8YQ30_OPUST (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YQ30_OPUST)

HSP 1 Score: 69.7 bits (169), Expect = 5.390e-13
Identity = 32/65 (49.23%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   16 VAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHG 207
            VAPF++K Y +V++ STD ++SW+ S+  D+FVI H+  F   +LP+FF H+N++SF+RQLN +G
Sbjct:   22 VAPFLAKCYEMVDDPSTDCVISWNQSN--DSFVIWHMTEFSRDLLPKFFKHQNFSSFMRQLNIYG 84          
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A2C9VA84_MANES (HSF_DOMAIN domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VA84_MANES)

HSP 1 Score: 72.0 bits (175), Expect = 5.450e-13
Identity = 34/68 (50.00%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    7 LSPVAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHG 207
            ++ V PF+SK Y +V++ ST+ +VSWSSSD  ++FV+ +V  FQ+ +LP++F H N++SFVRQLN +G
Sbjct:    6 MNSVPPFLSKTYDMVDDPSTNSVVSWSSSD--NSFVVWNVPEFQKDLLPKYFKHSNFSSFVRQLNTYG 71          
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A0V0HBA1_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HBA1_SOLCH)

HSP 1 Score: 70.9 bits (172), Expect = 6.480e-13
Identity = 33/69 (47.83%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   13 PVAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHGECK 216
            P+ PF+SK Y +V++ STD +VSWS S+  ++FV+ +V  F   +LP++F H N++SFVRQLN +G  K
Sbjct:   11 PLPPFLSKTYDMVDDRSTDSVVSWSKSN--NSFVVWNVPEFSRDILPKYFKHNNFSSFVRQLNTYGYKK 77          
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: A0A6A6M427_HEVBR (HSF_DOMAIN domain-containing protein n=3 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6M427_HEVBR)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 34/65 (52.31%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   16 VAPFVSKAYGIVNEESTD-IVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHG 207
            V PF+SK Y +V++ ST+ +VSWSSSD  ++FV+ +V  FQ  +LP++F H N++SFVRQLN +G
Sbjct:    9 VPPFLSKTYDMVDDPSTNSVVSWSSSD--NSFVVWNVPEFQRDLLPKYFKHNNFSSFVRQLNTYG 71          
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Match: UPI00053CA2E0 (heat stress transcription factor A-1e-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA2E0)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-12
Identity = 32/68 (47.06%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    7 LSPVAPFVSKAYGIVNEEST-DIVSWSSSDGEDTFVIKHVGIFQEQVLPRFFSHRNYASFVRQLNNHG 207
            ++ V PF+SK Y +V++ ST ++VSWSS  G ++FV+++V  F +++LP++F H N++SFVRQLN +G
Sbjct:   16 VNSVPPFLSKTYDMVDDPSTNEVVSWSS--GNNSFVVRNVPEFTKELLPKYFKHNNFSSFVRQLNTYG 81          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64262.14013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B9S233_RICCO2.750e-1648.00HSF_DOMAIN domain-containing protein n=1 Tax=Ricin... [more]
UPI0007721EB26.830e-1550.00heat stress transcription factor A-1b isoform X2 n... [more]
A0A0V0GSL0_SOLCH5.410e-1447.83Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
W9S462_9ROSA1.400e-1347.83HSF_DOMAIN domain-containing protein n=2 Tax=Morus... [more]
A0A2P2JGW8_RHIMU3.430e-1350.00HSF_DOMAIN domain-containing protein n=1 Tax=Rhizo... [more]
A0A7C8YQ30_OPUST5.390e-1349.23HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
A0A2C9VA84_MANES5.450e-1350.00HSF_DOMAIN domain-containing protein n=1 Tax=Manih... [more]
A0A0V0HBA1_SOLCH6.480e-1347.83Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A6A6M427_HEVBR1.010e-1252.31HSF_DOMAIN domain-containing protein n=3 Tax=Hevea... [more]
UPI00053CA2E01.010e-1247.06heat stress transcription factor A-1e-like isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64262contigH-elongata_contig64262:869..1096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog3988.XP_002520052.1
Preferred nameHSF3
KEGG koko:K09419
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006950,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.sequence-specific DNA binding
EggNOG OGsCOG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.4694839-CDS-H-elongata_contig64262:868..10961622931028.4694839-CDS-H-elongata_contig64262:868..1096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64262 869..1096 -
1691679668.1227372-CDS-H-elongata_contig64262:868..10961691679668.1227372-CDS-H-elongata_contig64262:868..1096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64262 869..1096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64262.14013.1prot_H-elongata_contig64262.14013.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64262 869..1096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64262.14013.1

>prot_H-elongata_contig64262.14013.1 ID=prot_H-elongata_contig64262.14013.1|Name=mRNA_H-elongata_contig64262.14013.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MQLSPVAPFVSKAYGIVNEESTDIVSWSSSDGEDTFVIKHVGIFQEQVLP
RFFSHRNYASFVRQLNNHGECKWAK*
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mRNA from alignment at H-elongata_contig64262:869..1096-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64262.14013.1 ID=mRNA_H-elongata_contig64262.14013.1|Name=mRNA_H-elongata_contig64262.14013.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig64262:869..1096- (Himanthalia elongata Himel1 dioecious)
ATGCAGCTCTCGCCGGTCGCCCCGTTCGTCAGCAAGGCGTACGGGATCGT GAACGAGGAATCGACAGACATTGTTTCGTGGTCAAGCTCGGATGGAGAAG ACACATTTGTCATCAAGCACGTGGGCATTTTCCAGGAACAAGTCCTGCCT CGCTTCTTCAGCCATAGGAATTATGCCTCGTTCGTAAGGCAGCTGAACAA CCACGGTGAGTGCAAGTGGGCAAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig64262:869..1096-

>mRNA_H-elongata_contig64262.14013.1 ID=mRNA_H-elongata_contig64262.14013.1|Name=mRNA_H-elongata_contig64262.14013.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig64262:869..1096- (Himanthalia elongata Himel1 dioecious)
ATGCAGCTCTCGCCGGTCGCCCCGTTCGTCAGCAAGGCGTACGGGATCGT
GAACGAGGAATCGACAGACATTGTTTCGTGGTCAAGCTCGGATGGAGAAG
ACACATTTGTCATCAAGCACGTGGGCATTTTCCAGGAACAAGTCCTGCCT
CGCTTCTTCAGCCATAGGAATTATGCCTCGTTCGTAAGGCAGCTGAACAA
CCACGGTGAGTGCAAGTGGGCAAAATGAATGCAGCTCTCGCCGGTCGCCC
CGTTCGTCAGCAAGGCGTACGGGATCGTGAACGAGGAATCGACAGACATT
GTTTCGTGGTCAAGCTCGGATGGAGAAGACACATTTGTCATCAAGCACGT
GGGCATTTTCCAGGAACAAGTCCTGCCTCGCTTCTTCAGCCATAGGAATT
ATGCCTCGTTCGTAAGGCAGCTGAACAACCACGGTGAGTGCAAGTGGGCA
AAATGA
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