prot_H-elongata_contig64256.14012.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64256.14012.1
Unique Nameprot_H-elongata_contig64256.14012.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length118
Homology
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 9.040e-52
Identity = 94/111 (84.68%), Postives = 102/111 (91.89%), Query Frame = 0
Query:    8 DSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 118
            D  LTP +ALRRVFGH+AFR+GQ WG+ RA+ G+ SLLVLATG+GKSL YQLPALLLPGITVVVSPLVSLMEDQMA LPPQLPGASLSGSHGGLREVAGTVRDL+AGRVKV
Sbjct: 1341 DLPLTPASALRRVFGHKAFREGQEWGVARAMGGQASLLVLATGTGKSLTYQLPALLLPGITVVVSPLVSLMEDQMANLPPQLPGASLSGSHGGLREVAGTVRDLKAGRVKV 1451          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.240e-51
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 0
Query:    8 DSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 118
            D  LTP +ALRRVFGH+ FR+GQ WG+ RA+ G+ SLLVLATGSGKSL YQLPALLLPGITVVVSPLVSLMEDQMA LPPQLPGASLSGSHGGLREVAGTVRDL+AGRVKV
Sbjct: 1487 DLPLTPASALRRVFGHKTFREGQEWGVARAMGGQASLLVLATGSGKSLTYQLPALLLPGITVVVSPLVSLMEDQMANLPPQLPGASLSGSHGGLREVAGTVRDLKAGRVKV 1597          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A8J2WSZ9_9STRA (DNA helicase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSZ9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 8.220e-30
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 0
Query:   10 RLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGG-LREVAGTVRDLRAGRVKV 118
            +L P+  LR VFGHE +R GQ W +DR L G+ +L VL TG+GKSL YQLPA L+ G+ VVVSPLV+L+++Q++RLPP+LP  +LSG HG  LR+    + D+  GR KV
Sbjct:  445 QLAPSDVLRSVFGHEQYRTGQEWAVDRVLEGKSALCVLPTGAGKSLCYQLPACLVKGVVVVVSPLVALIDEQLSRLPPELPAVALSGRHGATLRQRVQALDDVEKGRAKV 554          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A7S3JR36_9STRA (DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR36_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.070e-29
Identity = 63/112 (56.25%), Postives = 82/112 (73.21%), Query Frame = 0
Query:    7 DDSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 118
            D S+++    LR VFG+  FR GQ+W I+R L+G  S+LVL TGSGKSL YQLPALL  G+TVVVSPL++L+E+QMARLPP+LP  SL GS G L     ++ D++ GR K+
Sbjct:  268 DTSQMSSVQVLRSVFGYSDFRPGQQWAIERVLQGLSSILVLPTGSGKSLCYQLPALLQNGLTVVVSPLLALIEEQMARLPPELPAVSLGGS-GSLESRLRSIEDIKHGRAKI 378          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A7S2W966_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W966_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.840e-28
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 0
Query:   30 QRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 118
            Q W I R L GE +LLV ATGSGKSL YQLPALLL G+T+V+SPLVSLMEDQ+A LPP +PGA LSG   G+ E+A T+R LR  R+KV
Sbjct:    1 QLWAIKRVLGGESTLLVQATGSGKSLCYQLPALLLEGLTIVISPLVSLMEDQLASLPPSIPGACLSGQQSGV-EIAKTIRGLRENRIKV 88          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.060e-27
Identity = 61/101 (60.40%), Postives = 78/101 (77.23%), Query Frame = 0
Query:   20 VFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPG--ITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 118
            +FGH+ FR GQ W I RAL GERSLL+L TG+GKSL YQ+ A L P   + VVVSPLVSLM DQ+ARLPPQ+PGA L+G    +RE+A  +RDLR+G++++
Sbjct: 1013 IFGHKEFRPGQFWAIKRALAGERSLLMLPTGAGKSLCYQMAAALSPAGSLVVVVSPLVSLMVDQVARLPPQVPGACLAGDVS-MRELARIIRDLRSGQLRI 1112          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A835ZBS9_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.870e-26
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 0
Query:   17 LRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQM 82
            LRRVFGH AFR+GQ W I+R L G  +LLV ATG+GKSL YQLPALLLPG+TVVVSPLVSLMEDQ+
Sbjct:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQV 66          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A2R5GCC5_9STRA (DNA helicase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCC5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.660e-26
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 0
Query:   17 LRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 118
            L  VFG E FR  Q W I R ++G+ SLLV  TGSGKSL YQLPALLLPG+T+V+SPLV+LMEDQ+  LP  +PGA LS    G RE+A  ++ ++AGR+KV
Sbjct:  702 LEDVFGFEKFRGDQLWAIKRIMQGKSSLLVQGTGSGKSLCYQLPALLLPGLTLVISPLVALMEDQLKSLPMAIPGAILSHQQSG-REMARAIKMVQAGRIKV 802          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A4RY08_OSTLU (DNA helicase n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RY08_OSTLU)

HSP 1 Score: 110 bits (276), Expect = 6.300e-26
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 0
Query:    3 KGEDDDSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 118
            + + D S    T  L R FGHE FR GQ   + R LRGE +L +L TG+GKSL YQLPALLLPG+T+V+SPL++LM DQM  LPP LPG +L  S    R++  T+  LRAG +KV
Sbjct:    7 RAKSDPSEANLTEVLNRGFGHEQFRPGQLEIVQRVLRGENTLALLPTGAGKSLTYQLPALLLPGLTIVISPLLALMADQMDSLPPSLPGGALR-SDMDRRDMWETLTRLRAGELKV 121          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: C1MMA9_MICPC (DNA helicase (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MMA9_MICPC)

HSP 1 Score: 109 bits (273), Expect = 1.590e-25
Identity = 62/105 (59.05%), Postives = 75/105 (71.43%), Query Frame = 0
Query:   14 TTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 118
            T  LRR FGHE+FR GQ   I R LRG  SL +L TG+GKSL YQLPALL PG+T+VVSPL++LM DQ+  LPP LPGA+L  S   L  +  T+ +LRAG+ KV
Sbjct:   15 TDILRRAFGHESFRPGQLEVIRRVLRGGSSLALLPTGAGKSLTYQLPALLFPGLTLVVSPLLALMSDQLRGLPPALPGAALR-SDQSLDALFHTLDELRAGKFKV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8A0_ECTSI9.040e-5284.68DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JFV2_9PHAE1.240e-5184.68DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A8J2WSZ9_9STRA8.220e-3054.55DNA helicase n=2 Tax=Pelagomonas calceolata TaxID=... [more]
A0A7S3JR36_9STRA2.070e-2956.25DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=4... [more]
A0A7S2W966_9STRA5.840e-2866.29Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
W7TAC7_9STRA3.060e-2760.40DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A835ZBS9_9STRA1.870e-2677.27Helicase ATP-binding domain-containing protein (Fr... [more]
A0A2R5GCC5_9STRA2.660e-2658.82DNA helicase n=1 Tax=Hondaea fermentalgiana TaxID=... [more]
A4RY08_OSTLU6.300e-2653.45DNA helicase n=2 Tax=Ostreococcus sp. 'lucimarinus... [more]
C1MMA9_MICPC1.590e-2559.05DNA helicase (Fragment) n=1 Tax=Micromonas pusilla... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 2..118
e-value: 1.7E-28
score: 101.3
NoneNo IPR availablePANTHERPTHR13710DNA HELICASE RECQ FAMILY MEMBERcoord: 7..118
NoneNo IPR availablePANTHERPTHR13710:SF108ATP-DEPENDENT DNA HELICASE Q4coord: 7..118
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..75
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 76..118
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..54
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 29..85
e-value: 3.8E-6
score: 26.8
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 34..118
score: 10.239
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 15..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64256contigH-elongata_contig64256:1681..2034 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64256.14012.1mRNA_H-elongata_contig64256.14012.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64256 1681..2034 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64256.14012.1 ID=prot_H-elongata_contig64256.14012.1|Name=mRNA_H-elongata_contig64256.14012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
EEKGEDDDSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATG
SGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGG
LREVAGTVRDLRAGRVKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase