mRNA_H-elongata_contig64256.14012.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64256.14012.1
Unique NamemRNA_H-elongata_contig64256.14012.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 9.040e-52
Identity = 94/111 (84.68%), Postives = 102/111 (91.89%), Query Frame = 1
Query:   22 DSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
            D  LTP +ALRRVFGH+AFR+GQ WG+ RA+ G+ SLLVLATG+GKSL YQLPALLLPGITVVVSPLVSLMEDQMA LPPQLPGASLSGSHGGLREVAGTVRDL+AGRVKV
Sbjct: 1341 DLPLTPASALRRVFGHKAFREGQEWGVARAMGGQASLLVLATGTGKSLTYQLPALLLPGITVVVSPLVSLMEDQMANLPPQLPGASLSGSHGGLREVAGTVRDLKAGRVKV 1451          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.240e-51
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 1
Query:   22 DSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
            D  LTP +ALRRVFGH+ FR+GQ WG+ RA+ G+ SLLVLATGSGKSL YQLPALLLPGITVVVSPLVSLMEDQMA LPPQLPGASLSGSHGGLREVAGTVRDL+AGRVKV
Sbjct: 1487 DLPLTPASALRRVFGHKTFREGQEWGVARAMGGQASLLVLATGSGKSLTYQLPALLLPGITVVVSPLVSLMEDQMANLPPQLPGASLSGSHGGLREVAGTVRDLKAGRVKV 1597          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A8J2WSZ9_9STRA (DNA helicase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSZ9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 8.220e-30
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 1
Query:   28 RLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGG-LREVAGTVRDLRAGRVKV 354
            +L P+  LR VFGHE +R GQ W +DR L G+ +L VL TG+GKSL YQLPA L+ G+ VVVSPLV+L+++Q++RLPP+LP  +LSG HG  LR+    + D+  GR KV
Sbjct:  445 QLAPSDVLRSVFGHEQYRTGQEWAVDRVLEGKSALCVLPTGAGKSLCYQLPACLVKGVVVVVSPLVALIDEQLSRLPPELPAVALSGRHGATLRQRVQALDDVEKGRAKV 554          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A7S3JR36_9STRA (DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR36_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.070e-29
Identity = 63/112 (56.25%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   19 DDSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
            D S+++    LR VFG+  FR GQ+W I+R L+G  S+LVL TGSGKSL YQLPALL  G+TVVVSPL++L+E+QMARLPP+LP  SL GS G L     ++ D++ GR K+
Sbjct:  268 DTSQMSSVQVLRSVFGYSDFRPGQQWAIERVLQGLSSILVLPTGSGKSLCYQLPALLQNGLTVVVSPLLALIEEQMARLPPELPAVSLGGS-GSLESRLRSIEDIKHGRAKI 378          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A7S2W966_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W966_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.840e-28
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   88 QRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
            Q W I R L GE +LLV ATGSGKSL YQLPALLL G+T+V+SPLVSLMEDQ+A LPP +PGA LSG   G+ E+A T+R LR  R+KV
Sbjct:    1 QLWAIKRVLGGESTLLVQATGSGKSLCYQLPALLLEGLTIVISPLVSLMEDQLASLPPSIPGACLSGQQSGV-EIAKTIRGLRENRIKV 88          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.060e-27
Identity = 61/101 (60.40%), Postives = 78/101 (77.23%), Query Frame = 1
Query:   58 VFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPG--ITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
            +FGH+ FR GQ W I RAL GERSLL+L TG+GKSL YQ+ A L P   + VVVSPLVSLM DQ+ARLPPQ+PGA L+G    +RE+A  +RDLR+G++++
Sbjct: 1013 IFGHKEFRPGQFWAIKRALAGERSLLMLPTGAGKSLCYQMAAALSPAGSLVVVVSPLVSLMVDQVARLPPQVPGACLAGDVS-MRELARIIRDLRSGQLRI 1112          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A835ZBS9_9STRA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS9_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.870e-26
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 1
Query:   49 LRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQM 246
            LRRVFGH AFR+GQ W I+R L G  +LLV ATG+GKSL YQLPALLLPG+TVVVSPLVSLMEDQ+
Sbjct:    1 LRRVFGHGAFREGQLWAIERVLAGRSTLLVQATGAGKSLAYQLPALLLPGLTVVVSPLVSLMEDQV 66          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A0A2R5GCC5_9STRA (DNA helicase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCC5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.660e-26
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   49 LRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
            L  VFG E FR  Q W I R ++G+ SLLV  TGSGKSL YQLPALLLPG+T+V+SPLV+LMEDQ+  LP  +PGA LS    G RE+A  ++ ++AGR+KV
Sbjct:  702 LEDVFGFEKFRGDQLWAIKRIMQGKSSLLVQGTGSGKSLCYQLPALLLPGLTLVISPLVALMEDQLKSLPMAIPGAILSHQQSG-REMARAIKMVQAGRIKV 802          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: A4RY08_OSTLU (DNA helicase n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RY08_OSTLU)

HSP 1 Score: 110 bits (276), Expect = 6.300e-26
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    7 KGEDDDSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
            + + D S    T  L R FGHE FR GQ   + R LRGE +L +L TG+GKSL YQLPALLLPG+T+V+SPL++LM DQM  LPP LPG +L  S    R++  T+  LRAG +KV
Sbjct:    7 RAKSDPSEANLTEVLNRGFGHEQFRPGQLEIVQRVLRGENTLALLPTGAGKSLTYQLPALLLPGLTIVISPLLALMADQMDSLPPSLPGGALR-SDMDRRDMWETLTRLRAGELKV 121          
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Match: C1MMA9_MICPC (DNA helicase (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MMA9_MICPC)

HSP 1 Score: 109 bits (273), Expect = 1.590e-25
Identity = 62/105 (59.05%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   40 TTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATGSGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGGLREVAGTVRDLRAGRVKV 354
            T  LRR FGHE+FR GQ   I R LRG  SL +L TG+GKSL YQLPALL PG+T+VVSPL++LM DQ+  LPP LPGA+L  S   L  +  T+ +LRAG+ KV
Sbjct:   15 TDILRRAFGHESFRPGQLEVIRRVLRGGSSLALLPTGAGKSLTYQLPALLFPGLTLVVSPLLALMSDQLRGLPPALPGAALR-SDQSLDALFHTLDELRAGKFKV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64256.14012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8A0_ECTSI9.040e-5284.68DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JFV2_9PHAE1.240e-5184.68DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A8J2WSZ9_9STRA8.220e-3054.55DNA helicase n=2 Tax=Pelagomonas calceolata TaxID=... [more]
A0A7S3JR36_9STRA2.070e-2956.25DNA helicase n=1 Tax=Aureoumbra lagunensis TaxID=4... [more]
A0A7S2W966_9STRA5.840e-2866.29Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
W7TAC7_9STRA3.060e-2760.40DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A835ZBS9_9STRA1.870e-2677.27Helicase ATP-binding domain-containing protein (Fr... [more]
A0A2R5GCC5_9STRA2.660e-2658.82DNA helicase n=1 Tax=Hondaea fermentalgiana TaxID=... [more]
A4RY08_OSTLU6.300e-2653.45DNA helicase n=2 Tax=Ostreococcus sp. 'lucimarinus... [more]
C1MMA9_MICPC1.590e-2559.05DNA helicase (Fragment) n=1 Tax=Micromonas pusilla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64256contigH-elongata_contig64256:1681..2034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue3.7e-44
Seed eggNOG ortholog2880.D7G8A0
KEGG koko:K10730,ko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.4202409-CDS-H-elongata_contig64256:1680..20341622931028.4202409-CDS-H-elongata_contig64256:1680..2034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64256 1681..2034 -
1691679668.1072373-CDS-H-elongata_contig64256:1680..20341691679668.1072373-CDS-H-elongata_contig64256:1680..2034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64256 1681..2034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64256.14012.1prot_H-elongata_contig64256.14012.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64256 1681..2034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64256.14012.1

>prot_H-elongata_contig64256.14012.1 ID=prot_H-elongata_contig64256.14012.1|Name=mRNA_H-elongata_contig64256.14012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
EEKGEDDDSRLTPTTALRRVFGHEAFRDGQRWGIDRALRGERSLLVLATG
SGKSLVYQLPALLLPGITVVVSPLVSLMEDQMARLPPQLPGASLSGSHGG
LREVAGTVRDLRAGRVKV
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mRNA from alignment at H-elongata_contig64256:1681..2034-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64256.14012.1 ID=mRNA_H-elongata_contig64256.14012.1|Name=mRNA_H-elongata_contig64256.14012.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at H-elongata_contig64256:1681..2034- (Himanthalia elongata Himel1 dioecious)
GAGGAAAAGGGAGAGGATGACGACTCGCGACTGACCCCGACGACGGCGCT GCGTCGTGTGTTCGGGCACGAGGCGTTTCGTGACGGGCAGCGATGGGGCA TCGACAGGGCGTTGAGAGGAGAGCGGAGCCTGCTGGTTCTCGCAACGGGC TCGGGGAAGAGCCTGGTTTACCAGCTCCCTGCGCTCCTGCTGCCAGGGAT CACGGTGGTGGTGTCTCCGCTGGTGTCGCTCATGGAGGACCAAATGGCGA GGCTGCCGCCACAGCTCCCCGGGGCTTCGCTGAGTGGGAGCCACGGGGGC CTCCGGGAGGTGGCCGGGACGGTTCGAGACTTGAGAGCCGGTCGGGTCAA GGTT
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Coding sequence (CDS) from alignment at H-elongata_contig64256:1681..2034-

>mRNA_H-elongata_contig64256.14012.1 ID=mRNA_H-elongata_contig64256.14012.1|Name=mRNA_H-elongata_contig64256.14012.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig64256:1681..2034- (Himanthalia elongata Himel1 dioecious)
GAGGAAAAGGGAGAGGATGACGACTCGCGACTGACCCCGACGACGGCGCT
GCGTCGTGTGTTCGGGCACGAGGCGTTTCGTGACGGGCAGCGATGGGGCA
TCGACAGGGCGTTGAGAGGAGAGCGGAGCCTGCTGGTTCTCGCAACGGGC
TCGGGGAAGAGCCTGGTTTACCAGCTCCCTGCGCTCCTGCTGCCAGGGAT
CACGGTGGTGGTGTCTCCGCTGGTGTCGCTCATGGAGGACCAAATGGCGA
GGCTGCCGCCACAGCTCCCCGGGGCTTCGCTGAGTGGGAGCCACGGGGGC
CTCCGGGAGGTGGCCGGGACGGTTCGAGACTTGAGAGCCGGTCGGGTCAA
GGTTGAGGAAAAGGGAGAGGATGACGACTCGCGACTGACCCCGACGACGG
CGCTGCGTCGTGTGTTCGGGCACGAGGCGTTTCGTGACGGGCAGCGATGG
GGCATCGACAGGGCGTTGAGAGGAGAGCGGAGCCTGCTGGTTCTCGCAAC
GGGCTCGGGGAAGAGCCTGGTTTACCAGCTCCCTGCGCTCCTGCTGCCAG
GGATCACGGTGGTGGTGTCTCCGCTGGTGTCGCTCATGGAGGACCAAATG
GCGAGGCTGCCGCCACAGCTCCCCGGGGCTTCGCTGAGTGGGAGCCACGG
GGGCCTCCGGGAGGTGGCCGGGACGGTTCGAGACTTGAGAGCCGGTCGGG
TCAAGGTT
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