prot_H-elongata_contig64230.14011.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64230.14011.1
Unique Nameprot_H-elongata_contig64230.14011.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length59
Homology
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6A5AWR6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AWR6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.820e-6
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    1 MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVALA 54
            +SAYVD+NYA CPDT+   SG  +L     ISW S+ Q +   +++E+E+VALA
Sbjct:   13 LSAYVDANYAMCPDTRRCVSGFFILFFNSLISWLSKKQGIVTLSTTEAEFVALA 66          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: UPI001CC5048C (secreted RxLR effector protein 161-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC5048C)

HSP 1 Score: 50.8 bits (120), Expect = 4.810e-6
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    4 YVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 52
            Y D+++A CPD   Y SG   L+ GGAISW S  Q LTAS++ ++EYVA
Sbjct:  145 YTDADFARCPDDLKYTSGYVFLMAGGAISWKSVKQTLTASSTMQAEYVA 193          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6A4Z0A0_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z0A0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.680e-6
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    1 MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVALA 54
            +SAYVD+NYA CPDT+   SG  +L     ISW S+ Q +   +++E+E+VALA
Sbjct:  159 LSAYVDANYAMCPDTRRCVSGFLILFFNSLISWLSKKQGIVTLSTTEAEFVALA 212          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6A4YX65_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YX65_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.890e-6
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    1 MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVALA 54
            +SAYVD+NYA CPDT+   SG  +L     ISW S+ Q +   +++E+E+VALA
Sbjct:  422 LSAYVDANYAMCPDTRRCVSGFLILFFNSLISWLSKKQGIVTLSTTEAEFVALA 475          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: UPI001C71A9AD (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C71A9AD)

HSP 1 Score: 50.8 bits (120), Expect = 7.990e-6
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 0
Query:    1 MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVALA 54
            +SAY DS++A+CPDT    +G  VLLG   ISW S+ Q + + +S+E+EY+A+A
Sbjct:  350 LSAYCDSDWASCPDTCRSVTGYCVLLGNSLISWKSKKQIVVSHSSAEAEYIAMA 403          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.080e-5
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 0
Query:    1 MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVAL 53
            +SAYVD++YA CPDT+   SG  +L  G  ISW ++ Q +   +++E+E+VAL
Sbjct:  699 LSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLSTTEAEFVAL 751          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.100e-5
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 0
Query:    1 MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVAL 53
            +SAYVD++YA CPDT+   SG  +L  G  ISW ++ Q +   +++E+E+VAL
Sbjct: 1843 LSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVAL 1895          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.870e-5
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 0
Query:    1 MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVAL 53
            +SAYVD +YA CPDT+   SG  +L  G  ISW ++ Q +   +++E+E+VAL
Sbjct: 1548 LSAYVDEDYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVAL 1600          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A2P5EYU5_TREOI (Uncharacterized protein (Fragment) n=1 Tax=Trema orientale TaxID=63057 RepID=A0A2P5EYU5_TREOI)

HSP 1 Score: 48.1 bits (113), Expect = 4.010e-5
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 0
Query:    4 YVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVALAKIVN 58
            Y DS+YA C D++   SG   LL GGA+SW S  Q LTAS++ E+E+VA  K  N
Sbjct:   20 YPDSDYAGCLDSKRSTSGYIYLLAGGAVSWKSIKQTLTASSTMEAEFVACHKASN 74          
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Match: A0A179EXK4_METCM (Retrotransposon protein, Ty1-copia subclass n=2 Tax=Pochonia chlamydosporia 170 TaxID=1380566 RepID=A0A179EXK4_METCM)

HSP 1 Score: 48.5 bits (114), Expect = 5.300e-5
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 0
Query:    1 MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEYVA 52
            + AYVD+++A CPDT+   +G  + L G  +SW SR QR  A ++ E+EYVA
Sbjct:  469 LHAYVDADWAGCPDTRRSTTGYVIKLAGSPVSWSSRRQRTVAMSTCEAEYVA 520          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64230.14011.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6A5AWR6_9STRA3.820e-648.15Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI001CC5048C4.810e-653.06secreted RxLR effector protein 161-like n=1 Tax=Te... [more]
A0A6A4Z0A0_9STRA5.680e-648.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4YX65_9STRA5.890e-648.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C71A9AD7.990e-648.15uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A6G0W6P6_9STRA2.080e-545.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0W780_9STRA2.100e-545.28Integrase catalytic domain-containing protein n=3 ... [more]
A0A6G0X7I6_9STRA2.870e-545.28Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2P5EYU5_TREOI4.010e-550.91Uncharacterized protein (Fragment) n=1 Tax=Trema o... [more]
A0A179EXK4_METCM5.300e-546.15Retrotransposon protein, Ty1-copia subclass n=2 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 15..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64230contigH-elongata_contig64230:2366..2542 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64230.14011.1mRNA_H-elongata_contig64230.14011.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64230 2189..2542 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64230.14011.1 ID=prot_H-elongata_contig64230.14011.1|Name=mRNA_H-elongata_contig64230.14011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MSAYVDSNYATCPDTQCYASGGAVLLGGGAISWFSRAQRLTASASSESEY
VALAKIVN*
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