mRNA_H-elongata_contig118129.1401.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118129.1401.1
Unique NamemRNA_H-elongata_contig118129.1401.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Match: A0A8J5JH99_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JH99_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.920e-27
Identity = 48/79 (60.76%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 KKITADWAMKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVYCKWKASEILKALKEGRTPTPG 237
            K+I  D+A++ F+ ADDEDRAG+A+++TAR FYAAG FFD+L QFG+  E+   +R YCK+KA+ ILKA+KEG+TPTPG
Sbjct:   87 KEICEDFALEIFSKADDEDRAGMANKSTARTFYAAGTFFDILSQFGDISEDVAEKRRYCKYKAATILKAIKEGKTPTPG 165
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BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Match: A0A0W8AZU1_PHYNI (Vacuolar protein sorting-associated protein VTA1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8AZU1_PHYNI)

HSP 1 Score: 108 bits (269), Expect = 5.780e-27
Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 KKITADWAMKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVYCKWKASEILKALKEGRTPTPG 237
            K+I  D+AM+ F+ ADDEDRAGLA++ TAR FYAAG FFD+L QFG+  E+   +R YCK+KA+ ILKA+KEG+TPTPG
Sbjct:   89 KEICEDFAMEIFSKADDEDRAGLANKGTARTFYAAGTFFDILNQFGDISEDVVEKRRYCKYKAATILKAIKEGKTPTPG 167
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BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Match: A0A3R7IJD0_9STRA (Vta1 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IJD0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.290e-27
Identity = 48/79 (60.76%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 KKITADWAMKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVYCKWKASEILKALKEGRTPTPG 237
            K+I  D+AM+ F+ ADDEDRAG+A ++TAR FYAAG FFD+L QFG+  ++   +R YCK+KA+ ILKA+KEG+TPTPG
Sbjct:   89 KEICEDFAMEIFSKADDEDRAGMASKSTARTFYAAGTFFDILNQFGDISDDIVEKRRYCKYKAATILKAIKEGQTPTPG 167
[Close]
BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Match: W2LDM5_PHYPR (Vta1 domain-containing protein n=20 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LDM5_PHYPR)

HSP 1 Score: 108 bits (269), Expect = 3.860e-26
Identity = 50/79 (63.29%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 KKITADWAMKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVYCKWKASEILKALKEGRTPTPG 237
            K+I  D+AM+ F+ ADDEDRAGLA++ TAR FYAAG FFD+L QFG+  E+   +R YCK+KA+ ILKA+KEG+TPTPG
Sbjct:   89 KEICEDFAMEIFSKADDEDRAGLANKGTARTFYAAGTFFDILNQFGDISEDVVEKRRYCKYKAATILKAIKEGKTPTPG 167
[Close]
BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Match: A0A329T423_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T423_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.070e-25
Identity = 48/79 (60.76%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 KKITADWAMKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVYCKWKASEILKALKEGRTPTPG 237
            K+I  D+A++ F+ ADDEDRAG+A+++TAR FYAAG FFD+L QFG+  E+   +R YCK+KA+ ILKA+KEG+TPTPG
Sbjct:   87 KEICEDFALEIFSKADDEDRAGMANKSTARTFYAAGTFFDILSQFGDISEDVAEKRRYCKYKAATILKAIKEGKTPTPG 165
[Close]
BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Match: D0MXZ0_PHYIT (Vacuolar protein sorting-associated protein VTA1 n=3 Tax=Phytophthora TaxID=4783 RepID=D0MXZ0_PHYIT)

HSP 1 Score: 106 bits (264), Expect = 1.270e-25
Identity = 49/79 (62.03%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 KKITADWAMKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVYCKWKASEILKALKEGRTPTPG 237
            K+I  D+AM+ F+ ADDEDRAG+A ++TAR FYAAG FFD+L QFG+  E+   +R YCK+KA+ ILKA+KEG+TPTPG
Sbjct:   88 KEICEDFAMEIFSKADDEDRAGMATKSTARTFYAAGTFFDILSQFGDLSEDVVEKRRYCKFKAATILKAIKEGKTPTPG 166
[Close]
BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Match: H3HDB6_PHYRM (Vta1 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDB6_PHYRM)

HSP 1 Score: 103 bits (256), Expect = 1.520e-25
Identity = 46/79 (58.23%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 KKITADWAMKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVYCKWKASEILKALKEGRTPTPG 237
            K+I  D+A++ F+ ADDEDRAG+A+++TAR FYAAG FFD+L QFG+  ++   +R YCK+KA+ ILKA+KEG+TP PG
Sbjct:   89 KEICEDFAIEIFSKADDEDRAGMANKSTARTFYAAGTFFDILNQFGDISDDVAEKRRYCKYKAATILKAIKEGKTPEPG 167
[Close]
BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Match: G4YHA5_PHYSP (Vta1 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YHA5_PHYSP)

HSP 1 Score: 105 bits (263), Expect = 1.680e-25
Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    1 KKITADWAMKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVYCKWKASEILKALKEGRTPTPG 237
            K+I  D+AM+ F  ADDEDRAG+A+++TAR FYAAG FFD+L QFG+  E+   +R YCK+KA+ ILKA+KEG+ PTPG
Sbjct:   89 KEICEDFAMEIFTKADDEDRAGMANKSTARTFYAAGTFFDILNQFGDVSEDVVEKRRYCKYKAATILKAIKEGKVPTPG 167
[Close]
BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Match: A0A8K1CU29_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CU29_PYTOL)

HSP 1 Score: 105 bits (263), Expect = 2.380e-25
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    1 KKITADWAMKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVYCKWKASEILKALKEGRTPTPG 237
            K+I  D+A++ F  ADDEDRAG AD+NTAR FYAAG FFD+L QFG+  E+   +R YCK+KA+ ILKA+KEG  PTPG
Sbjct:  103 KEICEDFALEIFTKADDEDRAGCADKNTARTFYAAGTFFDILNQFGDVPEDIEEKRRYCKYKAATILKAIKEGVAPTPG 181
[Close]
BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Match: A0A5D6XIJ2_9STRA (Vta1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIJ2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.380e-25
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 KKITADWAMKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVYCKWKASEILKALKEGRTPTPG 237
            K+I  D+A++ F  AD+EDRAG AD+NTAR FYAAG FFD+L QFG+  +    +R YCK+KA+ ILKA+KEGRTPTPG
Sbjct:   88 KEICEDFALEIFTKADNEDRAGAADKNTARTFYAAGTFFDILNQFGDISDVIAEKRKYCKFKAAMILKAIKEGRTPTPG 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118129.1401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5JH99_9STRA2.920e-2760.76Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A0W8AZU1_PHYNI5.780e-2763.29Vacuolar protein sorting-associated protein VTA1 n... [more]
A0A3R7IJD0_9STRA8.290e-2760.76Vta1 domain-containing protein n=3 Tax=Phytophthor... [more]
W2LDM5_PHYPR3.860e-2663.29Vta1 domain-containing protein n=20 Tax=Phytophtho... [more]
A0A329T423_9STRA1.070e-2560.76Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
D0MXZ0_PHYIT1.270e-2562.03Vacuolar protein sorting-associated protein VTA1 n... [more]
H3HDB6_PHYRM1.520e-2558.23Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
G4YHA5_PHYSP1.680e-2560.76Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A8K1CU29_PYTOL2.380e-2562.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XIJ2_9STRA3.380e-2562.03Vta1 domain-containing protein n=1 Tax=Pythium bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118129contigH-elongata_contig118129:352..1378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue7.3e-20
Seed eggNOG ortholog115417.EPrPW00000015501
Preferred nameVTA1
KEGG rclassRC00069,RC03004
KEGG koko:K03260,ko:K05954,ko:K12199,ko:K20182
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,ko03013,ko04138,ko04144,ko05416,map00900,map01130,map03013,map04138,map04144,map05416
KEGG ModuleM00428
GOsGO:0000003,GO:0001671,GO:0002376,GO:0002831,GO:0002833,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005829,GO:0006810,GO:0006914,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007032,GO:0007034,GO:0007275,GO:0008022,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009605,GO:0009607,GO:0009791,GO:0009814,GO:0009845,GO:0009987,GO:0010008,GO:0010154,GO:0010256,GO:0012505,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0022411,GO:0022414,GO:0022607,GO:0030234,GO:0031090,GO:0031347,GO:0031349,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032781,GO:0032879,GO:0032984,GO:0032991,GO:0036257,GO:0036258,GO:0036452,GO:0042802,GO:0042803,GO:0043085,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045324,GO:0046755,GO:0046907,GO:0046983,GO:0048316,GO:0048518,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060589,GO:0060590,GO:0061458,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071840,GO:0071985,GO:0080001,GO:0080134,GO:0090351,GO:0097708,GO:0098542,GO:0098588,GO:0098772,GO:0098796,GO:0098805,GO:1900424,GO:1900426,GO:1902494,GO:1903335,GO:1904896,GO:1904903,GO:1904949,GO:1990621
EggNOG free text desc.Vacuolar protein sorting-associated protein VTA1. Source PGD
EggNOG OGs1MDFS@121069,KOG0917@1,KOG0917@2759
EC2.5.1.58
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko03012,ko03019,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118129.1401.1prot_H-elongata_contig118129.1401.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118129 352..1354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.3206458-CDS-H-elongata_contig118129:351..5061622929689.3206458-CDS-H-elongata_contig118129:351..506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118129 352..506 -
1691679119.65528-CDS-H-elongata_contig118129:351..5061691679119.65528-CDS-H-elongata_contig118129:351..506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118129 352..506 -
1622929689.3359506-CDS-H-elongata_contig118129:1275..13541622929689.3359506-CDS-H-elongata_contig118129:1275..1354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118129 1276..1354 -
1691679119.6650908-CDS-H-elongata_contig118129:1275..13541691679119.6650908-CDS-H-elongata_contig118129:1275..1354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118129 1276..1354 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.3514729-UTR-H-elongata_contig118129:1354..13781622929689.3514729-UTR-H-elongata_contig118129:1354..1378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118129 1355..1378 -
1691679119.6721616-UTR-H-elongata_contig118129:1354..13781691679119.6721616-UTR-H-elongata_contig118129:1354..1378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118129 1355..1378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118129.1401.1

>prot_H-elongata_contig118129.1401.1 ID=prot_H-elongata_contig118129.1401.1|Name=mRNA_H-elongata_contig118129.1401.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MKEFNAADDEDRAGLADQNTARMFYAAGVFFDVLRQFGEPDEETNRRRVY
CKWKASEILKALKEGRTPTPGGAGEDVS
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mRNA from alignment at H-elongata_contig118129:352..1378-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118129.1401.1 ID=mRNA_H-elongata_contig118129.1401.1|Name=mRNA_H-elongata_contig118129.1401.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1027bp|location=Sequence derived from alignment at H-elongata_contig118129:352..1378- (Himanthalia elongata Himel1 dioecious)
AAGAAAATAACGGCGGACTGGGCGATGAAAGAGTTCAACGCCGCCGACGA
CGAGGACAGGGCCGGCCTTGCCGACCAGAACACCGCGCGCATGTTCTACG
CCGGTGAGGTTTACAGGCATAATATATACTATCTACTAGGGTACTATTTT
CGCGGGCCCGAACCAAAGACCAAGGACTTTATGTCAGAAATAATAATAAT
AATAATAATAATAATAATAATAATACCTAGTAATAAGTTCATTTTTTTTT
TTTTTTATAATAATAATAAAAGTGGGTGTTCGGAGGCTTTTAAGGAGTTC
ATATGTTTTTAATAATAATCATAAACAATAATAAACAGCATTTGAAGACA
TATACATAAATACATGTACACACACTCACTCACTCCCTCCGAAAAAAACG
AGCAGCGAAAAGAATAAAATATTTACTCTGGAGTAATGTACCTCTGATGT
ACCTGATGTACCTTATATACCTTTTCGTAGCAATGGTGGCGTTATGTCGC
GTAAATTTGGTGGGTGGTGCGCCCTGCTTTATGTGCTTTTGTGTGTGTGT
GTGTGTGTGTATGTATCTGTATTTATTAAACTGCACAAAACCGCTTCATC
CGGCTCCATCATGCTAATCCTTATGGGCTATTCGCATTTTGGTCCTTCAA
ATGGTCCTTCCTGTGGGGGATCAATGTGTGTGTGCGTTCAAGGCTGCATG
ACTTTTTATGTCGCTCGTAGGGTGATACACGGCGTTGCCTCCGCTCCTTT
CTCCCCCTTTCGCAACACGCCTCCCTCCCTCCCTCTCTCCCTCCCTCTCT
CCCTCCCTCCGTCCGCGTCATCGTGTTCGCGTTCGTGCCCCTGGGTGTAT
CGTCCCACGCGCGTTGCGGCAGCCGGGGTTTTCTTTGACGTTCTGCGGCA
GTTCGGTGAGCCGGACGAGGAAACGAACCGCAGGCGGGTGTACTGTAAGT
GGAAGGCGTCGGAGATCCTCAAGGCGCTCAAAGAAGGACGGACCCCCACT
CCGGGGGGCGCAGGCGAAGACGTAAGC
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Coding sequence (CDS) from alignment at H-elongata_contig118129:352..1378-

>mRNA_H-elongata_contig118129.1401.1 ID=mRNA_H-elongata_contig118129.1401.1|Name=mRNA_H-elongata_contig118129.1401.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig118129:352..1378- (Himanthalia elongata Himel1 dioecious)
ATGAAAGAGTTCAACGCCGCCGACGACGAGGACAGGGCCGGCCTTGCCGA
CCAGAACACCGCGCGCATGTTCTACGCCGATGAAAGAGTTCAACGCCGCC
GACGACGAGGACAGGGCCGGCCTTGCCGACCAGAACACCGCGCGCATGTT
CTACGCCGCCGGGGTTTTCTTTGACGTTCTGCGGCAGTTCGGTGAGCCGG
ACGAGGAAACGAACCGCAGGCGGGTGTACTGTAAGTGGAAGGCGTCGGAG
ATCCTCAAGGCGCTCAAAGAAGGACGGACCCCCACTCCGGGGGGCGCAGG
CGAAGACGTAAGCCCGGGGTTTTCTTTGACGTTCTGCGGCAGTTCGGTGA
GCCGGACGAGGAAACGAACCGCAGGCGGGTGTACTGTAAGTGGAAGGCGT
CGGAGATCCTCAAGGCGCTCAAAGAAGGACGGACCCCCACTCCGGGGGGC
GCAGGCGAAGACGTAAGC
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