mRNA_H-elongata_contig64217.14009.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64217.14009.1
Unique NamemRNA_H-elongata_contig64217.14009.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: A0A6H5JHB6_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHB6_9PHAE)

HSP 1 Score: 415 bits (1066), Expect = 8.730e-142
Identity = 210/261 (80.46%), Postives = 231/261 (88.51%), Query Frame = 1
Query:    1 LKARLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
            L+ARL ELD LV +P+LYDDS KA KIVKERA+VE KL+ V  L+SE++ W+EMYE+A LEEE  L+ EC++KVG LRK+AER RA+TLLSL GELS S CYLELQAGAGGTESHDWTSML KMYTRWAETK FTLRPL+SS G+EAGLRSVMV V GESAYGWLR EAGVHRLVRNSPYDP GRRHTSFSQVRV+PE GGE G AA VEIPAKDLKVDTMRAQGAGGQHVN+T+SAVR+THLPTGLVALSQSDRSQHKNR
Sbjct:  117 LEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSEVKSWREMYEMASLEEEGDLLTECIEKVGALRKQAERARADTLLSLGGELSFSNCYLELQAGAGGTESHDWTSMLYKMYTRWAETKAFTLRPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEAGVHRLVRNSPYDPNGRRHTSFSQVRVFPEAGGESGDAAKVEIPAKDLKVDTMRAQGAGGQHVNTTDSAVRLTHLPTGLVALSQSDRSQHKNR 377          
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: A0A3M1KBY3_9PROT (Peptide chain release factor 2 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1KBY3_9PROT)

HSP 1 Score: 263 bits (673), Expect = 2.130e-83
Identity = 138/258 (53.49%), Postives = 177/258 (68.60%), Query Frame = 1
Query:   10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
            RL+EL+  V NP L++D  +A K+++ER  +E  +     + SEL    E+ E+A  E +EA+IDE +D +  L + A     E+LLS  GE  ++ CYLE+ AGAGGTES DW  MLL+MY RWAE +GF    +  S GEEAG++S  VLV GE+AYGWL+ EAGVHRLVR SP+D   RRHTSF+ V VYP I  +      +E+  KDLK+DT RA GAGGQHVN TESAVR+THLPTG+V   Q++RSQHKNR
Sbjct:   31 RLSELNAEVENPDLWNDPERARKLMRERNRLESAVAACREIESELADTVELIELAEAEGDEAMIDEAMDSLRVLARRAHEKEIESLLS--GEADAADCYLEIHAGAGGTESQDWAEMLLRMYLRWAERRGFKTEVVQVSPGEEAGIKSATVLVKGENAYGWLKTEAGVHRLVRISPFDAGARRHTSFASVSVYPAIEDD----IEIEVEDKDLKIDTYRASGAGGQHVNRTESAVRITHLPTGIVVACQNERSQHKNR 282          
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: UPI00187B575F (peptide chain release factor 2 n=2 Tax=Sneathiella TaxID=510690 RepID=UPI00187B575F)

HSP 1 Score: 259 bits (661), Expect = 7.780e-82
Identity = 131/258 (50.78%), Postives = 182/258 (70.54%), Query Frame = 1
Query:   10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
            RL EL+ LV +P L++++ KA  +++ER  ++  +    R+S +LE   E+ E+A +EE+E  ++E  + +  LR E ++ R E++LS  GE+  + CYLE+ AGAGGTES DWT +LL+MY RWA+  G   + L  SAGEEAGL+SV + ++GE+AYGWL+ E+GVHRLVR SP+D   RRHTSFS V VYP I  +      +EI  KDL++DT RA GAGGQHVN TESA+R+TH+PT +V   Q+DRSQHKN+
Sbjct:   31 RLDELNSLVEDPELWNNATKAQGLMRERTTLDTAINAYKRISQDLEDTVELIELAEMEEDEDTLNEAEEALNDLRVEVDKRRLESMLS--GEVDGNDCYLEIHAGAGGTESQDWTQILLRMYMRWADQHGCKTKVLEESAGEEAGLKSVTIEISGENAYGWLKTESGVHRLVRISPFDSNARRHTSFSSVGVYPVIDDD----IDIEIEEKDLRIDTYRASGAGGQHVNRTESAIRITHIPTNIVVQCQNDRSQHKNK 282          
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: UPI00146B70B7 (peptide chain release factor 2 n=1 Tax=Sneathiella aquimaris TaxID=2599305 RepID=UPI00146B70B7)

HSP 1 Score: 255 bits (652), Expect = 1.720e-80
Identity = 128/258 (49.61%), Postives = 182/258 (70.54%), Query Frame = 1
Query:   10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
            RL EL+ LV +P L++DS+KA  +++ER  ++  +    R+  +L+   E+ E++ +E++E  + E  + +  L+ E ++ R E++LS  GE+  + CYLE+ AGAGGTES DWT +LL+MY RWAE  G  ++ L  SAGEEAGL+SV + ++GE+AYGWL+ E+GVHRLVR SP+D   RRHTSFS V V+P I  +      +EI  KDL++DT RA GAGGQHVN TESA+R+TH+PT +V   Q+DRSQHKN+
Sbjct:   31 RLEELNSLVEDPDLWNDSSKAQALMRERTNLDTAITAYNRIVQDLDDTVELMELSEMEDDEETLGEAAEALRELQVEVDKRRLESMLS--GEVDGNDCYLEIHAGAGGTESQDWTQILLRMYMRWAEQHGCKVKTLEESAGEEAGLKSVTIEISGENAYGWLKTESGVHRLVRISPFDSNARRHTSFSSVGVFPVIDDD----IDIEIEEKDLRIDTYRASGAGGQHVNRTESAIRITHIPTNVVVQCQNDRSQHKNK 282          
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: UPI00146C39DC (peptide chain release factor 2 n=1 Tax=Sneathiella chinensis TaxID=349750 RepID=UPI00146C39DC)

HSP 1 Score: 255 bits (651), Expect = 2.740e-80
Identity = 130/258 (50.39%), Postives = 181/258 (70.16%), Query Frame = 1
Query:   10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
            RL EL+ LV +P L+++++KA  +++ER  +E  +    R++ +LE   E+ E+A +E++E  + E    +  L  E ER R E++LS  GE+ ++ CY+E+ AGAGGTES DW  +LL+MYTRWAE  G  ++ L  S GEEAGL+SV + VNGE+AYGWL+ E+GVHRLVR SP+D   RRHTSF+ V V+P I  +      ++I  KDL++DT RA GAGGQHVN TESA+R+TH+PT +V   Q+DRSQHKNR
Sbjct:   31 RLDELNSLVEDPDLWNNASKAQALMRERTSLENAINSYKRVAQDLEDTVELIELAEMEDDEDTLQEAEAALKDLHTEVERRRVESMLS--GEVDANDCYVEIHAGAGGTESQDWAQILLRMYTRWAEQHGCKVKILEESPGEEAGLKSVTIEVNGENAYGWLKTESGVHRLVRISPFDSNARRHTSFTSVGVFPVIDDD----IEIDIDEKDLRIDTYRASGAGGQHVNRTESAIRITHIPTNVVVQCQNDRSQHKNR 282          
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: D0NMN6_PHYIT (Peptide chain release factor, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NMN6_PHYIT)

HSP 1 Score: 254 bits (648), Expect = 9.270e-80
Identity = 128/257 (49.81%), Postives = 183/257 (71.21%), Query Frame = 1
Query:   13 LTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
            L EL     +P+L+DD++ AA +V+  A +E +   V  L  +    +E+Y +A  EE+E+++ +CV  +  +R EA++ R E LLS   E  +  C+LE+QAGAGGT+S DWT+ML +MY RW+E +GF ++ +  S G+EAG RSV++ ++G  AYGW + EAGVHRLVR SP+D  GRRHTSF+QVRVYP +  E  ++A +E+  KDL++DT R+ G GGQHVNST+SA+R+THL TG+V  SQSDRSQH+N+
Sbjct:   34 LAELRQEAADPKLWDDASNAASVVQRLAALESRETRVHELHRQFLDTKELYVLAKEEEDESMLGDCVSAMTVVRAEAQQLRLEFLLSH--ETDAHSCFLEIQAGAGGTDSCDWTAMLARMYARWSEMRGFQVQYVDESVGDEAGFRSVVLKLDGVYAYGWAKNEAGVHRLVRISPFDSAGRRHTSFAQVRVYP-MAAEGRSSAEIEVSTKDLRIDTFRSSGPGGQHVNSTDSAIRITHLRTGIVVQSQSDRSQHRNK 287          
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: H3GA21_PHYRM (RF_PROK_I domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GA21_PHYRM)

HSP 1 Score: 253 bits (646), Expect = 2.880e-79
Identity = 129/257 (50.19%), Postives = 177/257 (68.87%), Query Frame = 1
Query:   13 LTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
            LTEL     +P L+DD+  AA +V+  A +E +      L       +E+Y +A  E +E +I +CV+ +  +R  A++ R E LLS   +  S  C+LE+QAGAGGT+S DWT+ML +MY RW E +GF ++ +  S G+EAG RSV++ ++G  AYGW + EAGVHRLVR SP+D  GRRHTSF+QVRVYP +  E  +   +EIP KDL++DT R+ G GGQHVNST+SA+R+THLPTG+V  SQSDRSQH+N+
Sbjct:   48 LTELREEAADPNLWDDATTAASVVQRLAALESRETRAHELQRRFLDTKELYVMATEESDEPMIRDCVNAMTAVRTGAQQLRLELLLSHESDARS--CFLEIQAGAGGTDSCDWTAMLARMYARWGEARGFQVQHVDESVGDEAGFRSVVLRLDGAYAYGWAKSEAGVHRLVRISPFDSAGRRHTSFAQVRVYP-MASEGRSKEEIEIPTKDLRIDTFRSSGPGGQHVNSTDSAIRITHLPTGIVVQSQSDRSQHRNK 301          
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: A0A4V3RYB7_9PROT (Peptide chain release factor 2 n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4V3RYB7_9PROT)

HSP 1 Score: 252 bits (643), Expect = 4.270e-79
Identity = 131/259 (50.58%), Postives = 180/259 (69.50%), Query Frame = 1
Query:   10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTR-AETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
            RL EL+    +P L+DD ++A  +++ER +++  +  V  + SEL    E+ E+A +EE+E+L+DE       LRK AER R AE    LSGE  ++ C++E+  GAGGTE+ DW +ML++MY+RWA+  GF +  +   AGEEAGL+S  + V GE+AYGWL+ EAG+HRLVR SP+D +GRRHTSF+ V VYPEI         +EI  KD++ DT RA GAGGQHVN T+SA+R+TH+PTG+V   Q+DRSQHKNR
Sbjct:   31 RLDELNAKAEDPGLWDDPSRAQALMRERNKLDSAMTEVREIESELAENLEVAELAEMEEDESLLDEAE---AALRKLAERARRAELQALLSGEADANDCFVEIHPGAGGTEAQDWAAMLVRMYSRWAQASGFKVEVIEEQAGEEAGLKSATLHVKGENAYGWLKTEAGIHRLVRISPFDSSGRRHTSFASVWVYPEIDEN----IEIEINEKDVRTDTFRASGAGGQHVNKTDSAIRLTHIPTGIVVQCQADRSQHKNR 282          
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: A0A2E2QH92_9PROT (Peptide chain release factor 2 n=6 Tax=Sneathiella TaxID=510690 RepID=A0A2E2QH92_9PROT)

HSP 1 Score: 251 bits (641), Expect = 8.560e-79
Identity = 132/258 (51.16%), Postives = 176/258 (68.22%), Query Frame = 1
Query:   10 RLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
            RL EL+ LV +P L++D+ KA  +++ER  +E  L    R+  ELE   E+  +A  EE+E  I E    +  L  +  R R E++LS  GE+ ++ CY+E+ +GAGGTES DWT MLL+MY RWA+  G  ++ L  SAGEEAGL+SV + V+GE+AYGWL+ E+GVHRLVR SP+D   RRHTSFS V VYP I  +      +E+  KDL++D  RA GAGGQHVN TESAVR+TH+PT +V   Q+DRSQHKN+
Sbjct:   31 RLEELNSLVEDPDLWNDATKAQSLMRERTTLENALNGYKRIEQELEDNVELIALAEEEEDEETITEAETGLKTLLADVNRRRLESMLS--GEVDANDCYVEIHSGAGGTESQDWTQMLLRMYMRWADQHGHKVKVLEESAGEEAGLKSVTIEVSGENAYGWLKTESGVHRLVRISPFDSNARRHTSFSSVGVYPVIDDD----IDIEVDDKDLRIDVYRASGAGGQHVNRTESAVRITHIPTNVVVQCQNDRSQHKNK 282          
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Match: A0A662WW55_9STRA (RF_PROK_I domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW55_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.050e-78
Identity = 129/260 (49.62%), Postives = 177/260 (68.08%), Query Frame = 1
Query:    4 KARLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEMWQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSGCYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLRSVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIGGERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVALSQSDRSQHKNR 783
            K  L +L      P L+DD+ +AA +V++ A +E +      L       +E+Y +A  E +E L+ +C   +  +R +A++ R E LLS   +  S  C+LE+QAGAGGT+S DWT+ML +MY RW E +GF ++    SAG+EAG RSV++ ++G  AYGW + EAGVHRLVR SP+D  GRRHTSF+QVRVYP      G+   VE+PAKDL+VDT R+ G GGQHVNST+SA+R+THLP+G+V  SQSDRSQH+N+
Sbjct:  106 KEALAKLRVQAAEPNLWDDATRAASVVQQLAALEAREAQARELQRRFLDTKELYALAAEEADEPLLRDCEAAMVQVRVDAQQLRLELLLSHESDARS--CFLEIQAGAGGTDSCDWTAMLARMYARWGEARGFQVQHADESAGDEAGFRSVVLRLDGAFAYGWAKSEAGVHRLVRVSPFDSAGRRHTSFAQVRVYPMASEGGGSRQDVELPAKDLRVDTFRSSGPGGQHVNSTDSAIRITHLPSGIVVQSQSDRSQHRNK 363          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64217.14009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHB6_9PHAE8.730e-14280.46RF_PROK_I domain-containing protein n=2 Tax=Ectoca... [more]
A0A3M1KBY3_9PROT2.130e-8353.49Peptide chain release factor 2 n=1 Tax=Alphaproteo... [more]
UPI00187B575F7.780e-8250.78peptide chain release factor 2 n=2 Tax=Sneathiella... [more]
UPI00146B70B71.720e-8049.61peptide chain release factor 2 n=1 Tax=Sneathiella... [more]
UPI00146C39DC2.740e-8050.39peptide chain release factor 2 n=1 Tax=Sneathiella... [more]
D0NMN6_PHYIT9.270e-8049.81Peptide chain release factor, putative n=2 Tax=Phy... [more]
H3GA21_PHYRM2.880e-7950.19RF_PROK_I domain-containing protein n=1 Tax=Phytop... [more]
A0A4V3RYB7_9PROT4.270e-7950.58Peptide chain release factor 2 n=1 Tax=Marinicauda... [more]
A0A2E2QH92_9PROT8.560e-7951.16Peptide chain release factor 2 n=6 Tax=Sneathiella... [more]
A0A662WW55_9STRA1.050e-7849.62RF_PROK_I domain-containing protein n=2 Tax=Nothop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64217contigH-elongata_contig64217:985..3455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.5
Seed ortholog evalue1.2e-114
Seed eggNOG ortholog2880.D8LKZ9
KEGG koko:K02836
EggNOG free text desc.translation release factor activity
EggNOG OGsCOG0216@1,KOG2726@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeptide chain release factor
Ec32 orthologEc-11_006160.1
Exons5
Model size783
Cds size783
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64217.14009.1prot_H-elongata_contig64217.14009.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64217 985..3455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.1048784-CDS-H-elongata_contig64217:984..11501622931028.1048784-CDS-H-elongata_contig64217:984..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64217 985..1150 +
1691679667.9401624-CDS-H-elongata_contig64217:984..11501691679667.9401624-CDS-H-elongata_contig64217:984..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64217 985..1150 +
1622931028.1228497-CDS-H-elongata_contig64217:1654..17071622931028.1228497-CDS-H-elongata_contig64217:1654..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64217 1655..1707 +
1691679667.958434-CDS-H-elongata_contig64217:1654..17071691679667.958434-CDS-H-elongata_contig64217:1654..1707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64217 1655..1707 +
1622931028.139641-CDS-H-elongata_contig64217:2065..22521622931028.139641-CDS-H-elongata_contig64217:2065..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64217 2066..2252 +
1691679667.9748223-CDS-H-elongata_contig64217:2065..22521691679667.9748223-CDS-H-elongata_contig64217:2065..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64217 2066..2252 +
1622931028.158814-CDS-H-elongata_contig64217:2444..26481622931028.158814-CDS-H-elongata_contig64217:2444..2648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64217 2445..2648 +
1691679667.9856863-CDS-H-elongata_contig64217:2444..26481691679667.9856863-CDS-H-elongata_contig64217:2444..2648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64217 2445..2648 +
1622931028.1790857-CDS-H-elongata_contig64217:3282..34551622931028.1790857-CDS-H-elongata_contig64217:3282..3455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64217 3283..3455 +
1691679667.996074-CDS-H-elongata_contig64217:3282..34551691679667.996074-CDS-H-elongata_contig64217:3282..3455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64217 3283..3455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64217.14009.1

>prot_H-elongata_contig64217.14009.1 ID=prot_H-elongata_contig64217.14009.1|Name=mRNA_H-elongata_contig64217.14009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
LKARLTELDGLVVNPRLYDDSAKAAKIVKERAEVEGKLQMVGRLSSELEM
WQEMYEIAVLEEEEALIDECVDKVGFLRKEAERTRAETLLSLSGELSSSG
CYLELQAGAGGTESHDWTSMLLKMYTRWAETKGFTLRPLHSSAGEEAGLR
SVMVLVNGESAYGWLRREAGVHRLVRNSPYDPTGRRHTSFSQVRVYPEIG
GERGTAAGVEIPAKDLKVDTMRAQGAGGQHVNSTESAVRVTHLPTGLVAL
SQSDRSQHKNR
back to top

mRNA from alignment at H-elongata_contig64217:985..3455+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64217.14009.1 ID=mRNA_H-elongata_contig64217.14009.1|Name=mRNA_H-elongata_contig64217.14009.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2471bp|location=Sequence derived from alignment at H-elongata_contig64217:985..3455+ (Himanthalia elongata Himel1 dioecious)
CTCAAAGCCCGTCTGACCGAGCTGGATGGCCTCGTTGTAAACCCGAGACT ATACGACGACAGCGCGAAAGCGGCCAAGATCGTTAAGGAGAGAGCTGAGG TGGAAGGAAAGCTCCAGATGGTTGGGAGATTGAGTTCGGAGCTCGAGATG TGGCAGGAAATGTACGGTAAGAGGGTTCGGGTGTCAGCTGAGGCCGAAGG GTTTTTCTTTCAAAATTCTGAAGTAACTCATCCAACGCCCCCCCATACAC TATATCCCATAGACTAGTCACTCCTCCGTATTGTATCGCGTAGACTCCTC CGTACACAAACTGATTGAAAGACCACTCCAACCTGTTATGTACAAGCAAT AATCAATAATGTAGTTCCGTCTACCAAGTATGTAGCATTACTGGCTGGTA GCTCTACAATCCCCTATGTTGTTGTTTGTATTTACTCGCTCCGGAACGGT GGGGGTACTTGAGTTTTGCTTGCCTTGCCTAGCCTTGCGTTAGATGTTAC ACACCTTGGGAGGGTTGAAACGTACTTGAGTTTTGGACGCCTTAGGTTTT GGACTTTGGGTAGGGAGAGGCAGGTGAAAGTCGGATACGATGATTGCATC ACTGATATAGCCCTTATCCTAACCCTAATCCTAATCCTCCCGTCGGATTG GTATCCTTTACCGATGGCAGAAATAGCCGTGCTGGAGGAAGAAGAGGCGC TGATAGACGAGTGCGTCGATAAGGTGGGGTTAGGGGACTCAAGGTGAAGG TAAATATATCTACGCGCAAATGCTCTCCCAGCGGCTGGGACATATATTAT TGGTTTAGAGTAGCAGCAGTAGAAGCCTCCTCGAGACCCAGTGCTCCCCT CACCGGCTCTAGGAGCTATTGTCATCGTGTTTGGAGAATAAAAAGCATGT CTGTGGGGCTAGAATCCTCATGACTGCTGTCTTTGTGCTTTTATTGTAGC AAGGCCAAATATCATTTTAGCCCTTTAGGCTCTCGCCTTCTTACTGACCA TCCCAAAGGCTCACCCCATGGGCTTCGAATCTGAACCGCTTGCTTTTCCC CCGCATTCGTAAAAACAAACACGGAACACAGGTGGGGTTTCTACGTAAGG AAGCGGAACGAACACGTGCGGAGACGCTCCTCTCTCTGTCCGGTGAGCTG TCCTCTTCGGGTTGTTACCTCGAGCTGCAGGCAGGCGCCGGAGGCACCGA GAGCCATGACTGGACAAGCATGCTCCTCAAGATGTACACGCGCTGGGCAG AAACGAAAGGCTTCACTCGTGAGTGAAATATTCGGGTTAAGGTTTTACCC CCAAGATGAACCACGTGAGTTTGTTCGTCTGTTTTCGATTTTTCTCGTTT GTTCTCGTCTATTCTCTCGATAGATTGTCAGCCCTGTGCCAGGACATGAT AGGTTTTCCTCCAGCATACTCCGTTTATTTCCCGTCGCCATCCCTTTTCC CTCTCACAAGTGCGACCGCTGCACTCAAGCGCCGGAGAAGAAGCAGGCCT GCGGAGCGTTATGGTGCTCGTGAACGGTGAATCGGCTTACGGCTGGCTGA GACGGGAGGCCGGGGTGCACCGCCTCGTGCGCAACTCGCCCTACGATCCC ACGGGGCGCCGACACACCTCCTTCTCTCAAGTCAGAGTTTACCCGGAGAT CGGCGGGGAGCGCGGTGAGCACCGGCGGATTCCCGCAGCTCATTGTTGTA CTTAGGGTTAAGGGTATTTATACTGAAGGAGTAAGGAATGCCGAGGAGTC TCGAGGAGAATGATCGTTCCTTCAGTCGATTGTTTTCCGTTACGGTTGGA GCGAGTCCCAGGTGGGGTTTGGGCTATAGGGTTGGGATTTACCATTAGTT AAACACTTGTTGTGTACATGTAACACCTGGGTAATGTATGTGAATTGGCA CAGCTCGACAACTCCACCCCTACCTGTGGTTGGTTTCCCTAGCCCCAATT CTACCCTAATCCGTGTGGGAATGTATTGTGGATGCTGCCGTTCGTCGTTC GATTTCTCAAAACCAAACGGTGAGTGTGTGAAAAAGGAAAAACAAAGTTT GCAGCAAAGGGATAAAGCCAGGCCTGCGCATGTACGATGAGAGAGTAACC TGTCCCTTTTTTTGCAGGCAATACCTTCCCGCTGCTCCAACCCCTCCATA TCCCCTTCATGTCCCCTCAATGTTGAGAGGGTATGATATATAGGGGAGGG GCAGTGCTCACCATGATTACACGATGATTGCATGATTACACTTATTGCAG CAACAGGGTTTCCCATACCATCGTAACGCTTTGGCTCAGAGGGTTCAGGG ACCGCCGCGGGTGTCGAGATTCCCGCTAAGGATCTCAAGGTAGACACGAT GCGCGCTCAAGGGGCTGGAGGACAGCACGTCAACAGTACCGAGAGCGCCG TCCGCGTGACGCACTTGCCTACCGGGTTGGTAGCCCTGAGCCAAAGCGAC CGTTCTCAGCACAAAAACAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig64217:985..3455+

>mRNA_H-elongata_contig64217.14009.1 ID=mRNA_H-elongata_contig64217.14009.1|Name=mRNA_H-elongata_contig64217.14009.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig64217:985..3455+ (Himanthalia elongata Himel1 dioecious)
CTCAAAGCCCGTCTGACCGAGCTGGATGGCCTCGTTGTAAACCCGAGACT
ATACGACGACAGCGCGAAAGCGGCCAAGATCGTTAAGGAGAGAGCTGAGG
TGGAAGGAAAGCTCCAGATGGTTGGGAGATTGAGTTCGGAGCTCGAGATG
TGGCAGGAAATGTACGCTCAAAGCCCGTCTGACCGAGCTGGATGGCCTCG
TTGTAAACCCGAGACTATACGACGACAGCGCGAAAGCGGCCAAGATCGTT
AAGGAGAGAGCTGAGGTGGAAGGAAAGCTCCAGATGGTTGGGAGATTGAG
TTCGGAGCTCGAGATGTGGCAGGAAATGTACGAAATAGCCGTGCTGGAGG
AAGAAGAGGCGCTGATAGACGAGTGCGTCGATAAGAAATAGCCGTGCTGG
AGGAAGAAGAGGCGCTGATAGACGAGTGCGTCGATAAGGTGGGGTTTCTA
CGTAAGGAAGCGGAACGAACACGTGCGGAGACGCTCCTCTCTCTGTCCGG
TGAGCTGTCCTCTTCGGGTTGTTACCTCGAGCTGCAGGCAGGCGCCGGAG
GCACCGAGAGCCATGACTGGACAAGCATGCTCCTCAAGATGTACACGCGC
TGGGCAGAAACGAAAGGCTTCACTCGTGGGGTTTCTACGTAAGGAAGCGG
AACGAACACGTGCGGAGACGCTCCTCTCTCTGTCCGGTGAGCTGTCCTCT
TCGGGTTGTTACCTCGAGCTGCAGGCAGGCGCCGGAGGCACCGAGAGCCA
TGACTGGACAAGCATGCTCCTCAAGATGTACACGCGCTGGGCAGAAACGA
AAGGCTTCACTCTGCGACCGCTGCACTCAAGCGCCGGAGAAGAAGCAGGC
CTGCGGAGCGTTATGGTGCTCGTGAACGGTGAATCGGCTTACGGCTGGCT
GAGACGGGAGGCCGGGGTGCACCGCCTCGTGCGCAACTCGCCCTACGATC
CCACGGGGCGCCGACACACCTCCTTCTCTCAAGTCAGAGTTTACCCGGAG
ATCGGCGGGGAGCGCGTGCGACCGCTGCACTCAAGCGCCGGAGAAGAAGC
AGGCCTGCGGAGCGTTATGGTGCTCGTGAACGGTGAATCGGCTTACGGCT
GGCTGAGACGGGAGGCCGGGGTGCACCGCCTCGTGCGCAACTCGCCCTAC
GATCCCACGGGGCGCCGACACACCTCCTTCTCTCAAGTCAGAGTTTACCC
GGAGATCGGCGGGGAGCGCGGGACCGCCGCGGGTGTCGAGATTCCCGCTA
AGGATCTCAAGGTAGACACGATGCGCGCTCAAGGGGCTGGAGGACAGCAC
GTCAACAGTACCGAGAGCGCCGTCCGCGTGACGCACTTGCCTACCGGGTT
GGTAGCCCTGAGCCAAAGCGACCGTTCTCAGCACAAAAACAGGGGACCGC
CGCGGGTGTCGAGATTCCCGCTAAGGATCTCAAGGTAGACACGATGCGCG
CTCAAGGGGCTGGAGGACAGCACGTCAACAGTACCGAGAGCGCCGTCCGC
GTGACGCACTTGCCTACCGGGTTGGTAGCCCTGAGCCAAAGCGACCGTTC
TCAGCACAAAAACAGG
back to top