mRNA_H-elongata_contig64178.14005.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64178.14005.1
Unique NamemRNA_H-elongata_contig64178.14005.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64178.14005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64178contigH-elongata_contig64178:1040..2064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionReplication fork protection component Swi3
Ec32 orthologEc-12_002330.1
Exons1
Model size1025
Cds size990
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64178.14005.1prot_H-elongata_contig64178.14005.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64178 1064..2053 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.7320845-UTR-H-elongata_contig64178:1039..10631622931027.7320845-UTR-H-elongata_contig64178:1039..1063Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64178 1040..1063 +
1691679667.8197794-UTR-H-elongata_contig64178:1039..10631691679667.8197794-UTR-H-elongata_contig64178:1039..1063Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64178 1040..1063 +
1622931027.7682283-UTR-H-elongata_contig64178:2053..20641622931027.7682283-UTR-H-elongata_contig64178:2053..2064Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64178 2054..2064 +
1691679667.836225-UTR-H-elongata_contig64178:2053..20641691679667.836225-UTR-H-elongata_contig64178:2053..2064Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig64178 2054..2064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.7487862-CDS-H-elongata_contig64178:1063..20531622931027.7487862-CDS-H-elongata_contig64178:1063..2053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64178 1064..2053 +
1691679667.8279676-CDS-H-elongata_contig64178:1063..20531691679667.8279676-CDS-H-elongata_contig64178:1063..2053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64178 1064..2053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64178.14005.1

>prot_H-elongata_contig64178.14005.1 ID=prot_H-elongata_contig64178.14005.1|Name=mRNA_H-elongata_contig64178.14005.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=330bp
MDVDKEKDSTGDGRNEGKTSSAEAMNPAILSMKVRERMEENRRLALERLR
VKREEASKATTAGAGLKPLETDMPVDVSERIDSMDLDAHDDMANSGFKDD
EATLAEIEKGGNTKRATVNTGATISRAEATDPPPTASTFASIPLRSIAND
ASVIRMPETSTSLGTTGDTLEDLTTPSKTSGIGPIGRAACPSHEAAASEE
DEAPNDTIDRTSTMHEAAASSESIEVRTILENNCSKVTEMVASNNDGDSE
WALSEMTTAAEYADTVGTAVGVAVTKGSSHVNEVSMESPSKRRTLTSGRV
PLSPLGALLASTDVPAELKEKNSCTSPSK*
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mRNA from alignment at H-elongata_contig64178:1040..2064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64178.14005.1 ID=mRNA_H-elongata_contig64178.14005.1|Name=mRNA_H-elongata_contig64178.14005.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1025bp|location=Sequence derived from alignment at H-elongata_contig64178:1040..2064+ (Himanthalia elongata Himel1 dioecious)
GAGAGAATAGTCGGCAGCCGATACATGGACGTCGATAAAGAGAAGGACTC
AACGGGGGACGGAAGAAATGAAGGGAAAACTTCAAGCGCTGAGGCAATGA
ACCCAGCCATATTGTCAATGAAAGTGCGGGAGCGCATGGAAGAAAACCGG
CGACTTGCCCTGGAGAGACTTCGAGTCAAAAGAGAGGAGGCTTCAAAGGC
GACGACGGCTGGTGCGGGGCTAAAGCCACTAGAAACTGACATGCCTGTAG
ACGTGAGCGAGCGTATTGACTCCATGGATCTTGACGCTCATGATGATATG
GCAAACAGCGGCTTCAAAGACGATGAAGCCACTCTCGCCGAGATTGAGAA
AGGGGGAAACACGAAGAGAGCCACCGTGAACACTGGAGCTACGATATCAC
GGGCAGAAGCCACCGATCCCCCGCCGACTGCTTCCACTTTTGCTTCCATA
CCACTGAGATCGATCGCGAATGATGCCTCTGTCATAAGAATGCCAGAAAC
CTCAACGTCTTTAGGAACCACCGGTGACACACTCGAGGATTTGACCACGC
CATCAAAGACATCTGGAATAGGACCCATTGGGAGAGCGGCCTGTCCATCA
CATGAAGCGGCGGCAAGCGAGGAGGATGAGGCCCCAAACGATACAATCGA
CAGAACGAGCACGATGCATGAAGCGGCGGCTTCGAGTGAATCGATCGAAG
TGCGGACCATACTAGAGAACAACTGCTCGAAGGTAACCGAAATGGTGGCT
TCGAATAACGACGGAGACTCCGAATGGGCACTGTCGGAAATGACCACCGC
CGCCGAGTATGCTGACACAGTTGGTACCGCAGTAGGTGTAGCAGTGACCA
AGGGAAGTAGCCACGTGAACGAAGTTTCGATGGAAAGCCCTAGTAAGCGT
AGAACACTCACAAGTGGAAGGGTGCCGTTGTCTCCACTCGGTGCTTTGCT
TGCCAGTACTGACGTTCCTGCTGAGTTGAAAGAGAAAAACAGCTGTACGA
GCCCTTCTAAGTGAACTGATTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig64178:1040..2064+

>mRNA_H-elongata_contig64178.14005.1 ID=mRNA_H-elongata_contig64178.14005.1|Name=mRNA_H-elongata_contig64178.14005.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1980bp|location=Sequence derived from alignment at H-elongata_contig64178:1040..2064+ (Himanthalia elongata Himel1 dioecious)
ATGGACGTCGATAAAGAGAAGGACTCAACGGGGGACGGAAGAAATGAAGG
GAAAACTTCAAGCGCTGAGGCAATGAACCCAGCCATATTGTCAATGAAAG
TGCGGGAGCGCATGGAAGAAAACCGGCGACTTGCCCTGGAGAGACTTCGA
GTCAAAAGAGAGGAGGCTTCAAAGGCGACGACGGCTGGTGCGGGGCTAAA
GCCACTAGAAACTGACATGCCTGTAGACGTGAGCGAGCGTATTGACTCCA
TGGATCTTGACGCTCATGATGATATGGCAAACAGCGGCTTCAAAGACGAT
GAAGCCACTCTCGCCGAGATTGAGAAAGGGGGAAACACGAAGAGAGCCAC
CGTGAACACTGGAGCTACGATATCACGGGCAGAAGCCACCGATCCCCCGC
CGACTGCTTCCACTTTTGCTTCCATACCACTGAGATCGATCGCGAATGAT
GCCTCTGTCATAAGAATGCCAGAAACCTCAACGTCTTTAGGAACCACCGG
TGACACACTCGAGGATTTGACCACGCCATCAAAGACATCTGGAATAGGAC
CCATTGGGAGAGCGGCCTGTCCATCACATGAAGCGGCGGCAAGCGAGGAG
GATGAGGCCCCAAACGATACAATCGACAGAACGAGCACGATGCATGAAGC
GGCGGCTTCGAGTGAATCGATCGAAGTGCGGACCATACTAGAGAACAACT
GCTCGAAGGTAACCGAAATGGTGGCTTCGAATAACGACGGAGACTCCGAA
TGGGCACTGTCGGAAATGACCACCGCCGCCGAGTATGCTGACACAGTTGG
TACCGCAGTAGGTGTAGCAGTGACCAAGGGAAGTAGCCACGTGAACGAAG
TTTCGATGGAAAGCCCTAGTAAGCGTAGAACACTCACAAGTGGAAGGGTG
CCGTTGTCTCCACTCGGTGCTTTGCTTGCCAGTACTGACGTTCCTGCTGA
GTTGAAAGAGAAAAACAGCTGTACGAGCCCTTCTAAGTGAATGGACGTCG
ATAAAGAGAAGGACTCAACGGGGGACGGAAGAAATGAAGGGAAAACTTCA
AGCGCTGAGGCAATGAACCCAGCCATATTGTCAATGAAAGTGCGGGAGCG
CATGGAAGAAAACCGGCGACTTGCCCTGGAGAGACTTCGAGTCAAAAGAG
AGGAGGCTTCAAAGGCGACGACGGCTGGTGCGGGGCTAAAGCCACTAGAA
ACTGACATGCCTGTAGACGTGAGCGAGCGTATTGACTCCATGGATCTTGA
CGCTCATGATGATATGGCAAACAGCGGCTTCAAAGACGATGAAGCCACTC
TCGCCGAGATTGAGAAAGGGGGAAACACGAAGAGAGCCACCGTGAACACT
GGAGCTACGATATCACGGGCAGAAGCCACCGATCCCCCGCCGACTGCTTC
CACTTTTGCTTCCATACCACTGAGATCGATCGCGAATGATGCCTCTGTCA
TAAGAATGCCAGAAACCTCAACGTCTTTAGGAACCACCGGTGACACACTC
GAGGATTTGACCACGCCATCAAAGACATCTGGAATAGGACCCATTGGGAG
AGCGGCCTGTCCATCACATGAAGCGGCGGCAAGCGAGGAGGATGAGGCCC
CAAACGATACAATCGACAGAACGAGCACGATGCATGAAGCGGCGGCTTCG
AGTGAATCGATCGAAGTGCGGACCATACTAGAGAACAACTGCTCGAAGGT
AACCGAAATGGTGGCTTCGAATAACGACGGAGACTCCGAATGGGCACTGT
CGGAAATGACCACCGCCGCCGAGTATGCTGACACAGTTGGTACCGCAGTA
GGTGTAGCAGTGACCAAGGGAAGTAGCCACGTGAACGAAGTTTCGATGGA
AAGCCCTAGTAAGCGTAGAACACTCACAAGTGGAAGGGTGCCGTTGTCTC
CACTCGGTGCTTTGCTTGCCAGTACTGACGTTCCTGCTGAGTTGAAAGAG
AAAAACAGCTGTACGAGCCCTTCTAAGTGA
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