mRNA_H-elongata_contig64164.14003.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig64164.14003.1
Unique NamemRNA_H-elongata_contig64164.14003.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig64164.14003.1 vs. uniprot
Match: A0A6H5K075_9PHAE (DUF4470 domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K075_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 2.700e-5
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 
Query:   43 DAQCADMLLLGCSDARHALFTLW 111
            DA+ ADMLLLGCSDARHALFTLW
Sbjct:    2 DARRADMLLLGCSDARHALFTLW 24
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64164.14003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K075_9PHAE2.700e-591.30DUF4470 domain-containing protein (Fragment) n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64164contigH-elongata_contig64164:369..479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.6093104-CDS-H-elongata_contig64164:368..4791622931027.6093104-CDS-H-elongata_contig64164:368..479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64164 369..479 +
1691679667.7667286-CDS-H-elongata_contig64164:368..4791691679667.7667286-CDS-H-elongata_contig64164:368..479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig64164 369..479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64164.14003.1prot_H-elongata_contig64164.14003.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig64164 369..479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig64164.14003.1

>prot_H-elongata_contig64164.14003.1 ID=prot_H-elongata_contig64164.14003.1|Name=mRNA_H-elongata_contig64164.14003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
GCTPPENLLESVRKDAQCADMLLLGCSDARHALFTLW
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mRNA from alignment at H-elongata_contig64164:369..479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig64164.14003.1 ID=mRNA_H-elongata_contig64164.14003.1|Name=mRNA_H-elongata_contig64164.14003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig64164:369..479+ (Himanthalia elongata Himel1 dioecious)
GGATGCACTCCCCCTGAAAATCTCTTGGAAAGCGTAAGAAAGGATGCTCA
GTGCGCTGACATGCTTCTTCTCGGCTGCTCTGACGCACGCCACGCCCTCT
TCACCCTGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig64164:369..479+

>mRNA_H-elongata_contig64164.14003.1 ID=mRNA_H-elongata_contig64164.14003.1|Name=mRNA_H-elongata_contig64164.14003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig64164:369..479+ (Himanthalia elongata Himel1 dioecious)
GGATGCACTCCCCCTGAAAATCTCTTGGAAAGCGTAAGAAAGGATGCTCA
GTGCGCTGACATGCTTCTTCTCGGCTGCTCTGACGCACGCCACGCCCTCT
TCACCCTGTGGGGATGCACTCCCCCTGAAAATCTCTTGGAAAGCGTAAGA
AAGGATGCTCAGTGCGCTGACATGCTTCTTCTCGGCTGCTCTGACGCACG
CCACGCCCTCTTCACCCTGTGG
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