mRNA_H-elongata_contig64161.14002.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Match: D7FIE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE0_ECTSI) HSP 1 Score: 276 bits (705), Expect = 4.330e-87 Identity = 147/227 (64.76%), Postives = 167/227 (73.57%), Query Frame = 3
Query: 405 STVSRDEVVALPTVGVRTKRVLLVRHGQTDFNKRKICQGRRLNPPLNDVGREQARQLLPNFSLDAIVCSPLRRARETAEIVQTSH-LGTSVIMSNDLNEVDFGGAEGLPQAVAAVVLAPSYMAWKVGRFEVRSVRAGESGEDLQQRTAAAVEVLLHACTEGSQVLAVTHSSMIKFMLATLLGVPLSWIRKLGQDNCAVNALDFDPASGVWEAVVINGRRASGRADRF 1082
ST S + LP V TKR+ L RHGQTD NK +CQGR+LNPPLN+ GR QAR LL + LDAI+CSPLRRARETA IV+ SH L TS +S DLNEVDFGGAEGLPQ +A +LAPSY+AW GR + R+ GESG L++R AA LL +C EG QVL V+HSSMIKF LA LL VPLS IR LGQDNCAVNALDFD ASGV+EAV INGR GRA+ F
Sbjct: 74 STPSGGSGLVLPAVAASTKRIFLARHGQTDLNKLGVCQGRKLNPPLNENGRRQARTLLIDVELDAILCSPLRRARETAGIVRESHPLATSFAVSEDLNEVDFGGAEGLPQMASAAILAPSYLAWSHGRLDKRAGVLGESGVMLRRRGEAAAGTLLASCKEGRQVLGVSHSSMIKFTLAALLDVPLSTIRALGQDNCAVNALDFDTASGVFEAVAINGRPVRGRAESF 300
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Match: A0A6H5KHI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHI7_9PHAE) HSP 1 Score: 273 bits (698), Expect = 7.190e-86 Identity = 144/227 (63.44%), Postives = 165/227 (72.69%), Query Frame = 3
Query: 405 STVSRDEVVALPTVGVRTKRVLLVRHGQTDFNKRKICQGRRLNPPLNDVGREQARQLLPNFSLDAIVCSPLRRARETAEIVQTSH-LGTSVIMSNDLNEVDFGGAEGLPQAVAAVVLAPSYMAWKVGRFEVRSVRAGESGEDLQQRTAAAVEVLLHACTEGSQVLAVTHSSMIKFMLATLLGVPLSWIRKLGQDNCAVNALDFDPASGVWEAVVINGRRASGRADRF 1082
ST S + LP V TKR+ L RHGQTD NK +CQGR+LNPPLN+ GR QAR LL LD ++CSPLRRARETA IV+ SH L TS +S DLNEVDFGGAEGLPQ V+A +LAPSY+AW GR + R+ GESG L++R AA LL +C EG QVL V+HSSMIKF LA LL VPLS IR LGQDNCAVNALD+D SGV+EAV INGR GRA+ F
Sbjct: 89 STSSGGSGLVLPAVAAHTKRIFLARHGQTDLNKLGVCQGRKLNPPLNEKGRSQARTLLIGVELDGVLCSPLRRARETAGIVRESHPLATSFAVSEDLNEVDFGGAEGLPQMVSAAILAPSYLAWSHGRLDKRAGVLGESGVMLRRRGEAAAGTLLASCKEGRQVLGVSHSSMIKFTLAALLDVPLSTIRALGQDNCAVNALDYDTTSGVFEAVAINGRPVRGRAESF 315
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Match: A0A7S4JH75_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JH75_GUITH) HSP 1 Score: 147 bits (372), Expect = 2.030e-37 Identity = 80/198 (40.40%), Postives = 118/198 (59.60%), Query Frame = 3
Query: 429 VALPTVGVRTKRVLLVRHGQTDFNKRKICQGRRLNPPLNDVGREQARQL---LPNFSLDAIVCSPLRRARETAEIVQTSHLGTSVIMSNDLNEVDFGGAEGLPQAVAAVVLAPSYMAWKVGRFEVRSVRAGESGEDLQQRTAAAVEVLLHACTEGSQVLAVTHSSMIKFMLATLLGVPLSWIRKLGQDNCAVNALDFD 1013
+ LP +G +TKR++L RHG+T+ N+ QGRR+NPPLN GR QA++L L A+ S L RA ETA+ V+ H G + DL+EVDFG +EG + + ++ +Y W +G E R+ GES ++ R A++ LL +C EG V+AV+HSS ++F+L T LG R + Q NC V+ +D+D
Sbjct: 113 LGLPAIGAKTKRLILCRHGETELNRLGKIQGRRMNPPLNPRGRRQAQELAAALCGVRTSAVFSSELERAIETADEVEKFHAGARRSVLADLDEVDFGSSEGKSLESSRLRISATYARWIMGDEEARATPEGESYREVATRARRALDELLGSCREGEAVVAVSHSSYLRFLLQTCLGWRYGQARMVAQGNCCVDVIDYD 310
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Match: A0A5S9ID91_RHOMR (Phosphoglycerate mutase n=4 Tax=Rhodothermus marinus TaxID=29549 RepID=A0A5S9ID91_RHOMR) HSP 1 Score: 113 bits (282), Expect = 1.340e-25 Identity = 78/197 (39.59%), Postives = 108/197 (54.82%), Query Frame = 3
Query: 474 VRHGQTDFNKRKICQGRRLNPPLNDVGREQARQLLPNFS---LDAIVCSPLRRARETAEIVQTSHLGTSVIMSNDLNEVDFGGAEGLPQAVAA-VVLAPSYMAWKVGRFEVRSVRAGESGEDLQQRTAAAVEVLLHACTEGSQVLAVTHSSMIKFMLATLLG-VPLSWIRKLGQDNCAVNALDFDPASGVWEAVVIN 1049
VRHG+TD+N+ I QGR ++ PLND GR QA L F+ LDAI SPLRRA ETAE V+ H DL E+D+G EG P A + Y W+ G ++ V GES D+Q+R A+E +L EG VL V H ++ +LA++L L+ + L N AVN L ++ +G + A+ +N
Sbjct: 9 VRHGETDYNRNSIVQGRGVDAPLNDRGRRQAEALARRFAAVPLDAIYASPLRRALETAEAVRRYHPAVPFYQLADLEEMDWGELEGKPYAPPYDAKIRAIYERWRAGDYDY-PVPGGESILDVQRRALRALETILSR-HEGETVLIVAHGRFLRILLASVLPEYGLARMEALPHTNTAVNHLVYE--NGRFRALRLN 201
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Match: A0A0G4EKL9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EKL9_VITBC) HSP 1 Score: 113 bits (282), Expect = 8.300e-25 Identity = 75/226 (33.19%), Postives = 113/226 (50.00%), Query Frame = 3
Query: 462 RVLLVRHGQTDFNKRKICQGRRLNPPLNDVGREQARQL---LPNFSLDAIVCSPLRRARETAEIVQTSHLGTSVIMSNDLNEVDFGGAEGLPQAVAAVVLAPSYMAWKVGRFEVRSVRAGESGEDLQQRTAAAVEVLL-----------------------HACTEGSQVLAVTHSSMIKFMLATLLGVPLSWIRKLGQ----DNCAVNALDFDPASGVWEAVVIN 1049
R++L RHGQTD+NK ++ QGRR+N P+ND G QA L L + A+V S + RA +TA+IV + H + DL+EVDFG EG A L +Y +W++G E R GESG D+ R AA++ L+ A + V+AV H ++ +LA G + +R + +NC +N +D +PA+ + +IN
Sbjct: 66 RLVLCRHGQTDYNKERLIQGRRINAPINDEGVRQATALAGVLEGMDVRAVVSSSMMRAGQTADIVHSRHRDVPRLRFKDLDEVDFGELEGRGIASGLPSLTSTYASWRLGEGEARLGSIGESGIDIATRVRAAIDDLIVVAKQPPMLASRLGIDVSAAFASQADQQPPVVVAVAHGEFLRRLLADAAGDDVG-LRLSAETAVINNCGINVVDVNPATLQTKIQLIN 290
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Match: A0A1M6Q7W3_9BACT (Probable phosphoglycerate mutase n=1 Tax=Rhodothermus profundi TaxID=633813 RepID=A0A1M6Q7W3_9BACT) HSP 1 Score: 106 bits (264), Expect = 4.730e-23 Identity = 76/197 (38.58%), Postives = 108/197 (54.82%), Query Frame = 3
Query: 474 VRHGQTDFNKRKICQGRRLNPPLNDVGREQARQLLPNFS---LDAIVCSPLRRARETAEIVQTSHLGTSVIMSNDLNEVDFGGAEGLPQAVAA-VVLAPSYMAWKVGRFEVRSVRAGESGEDLQQRTAAAVEVLLHACTEGSQVLAVTHSSMIKFMLATLLG-VPLSWIRKLGQDNCAVNALDFDPASGVWEAVVIN 1049
VRHG+TD+N+ I QGR ++ PLN+ G+ QA L F+ LDAI SPL+RAR TAE V+ H DL E+D+G EG P A + Y W+ G + V GES D+Q+R A++ +L A EG VL VTH ++ +LA++L L+ + L N AVN L + +G + A+ +N
Sbjct: 9 VRHGETDYNRHGIVQGRGVDAPLNEHGQRQAEALARRFAEVALDAIYTSPLQRARATAEAVRQYHPDLPFYQMADLEEMDWGDLEGKPCAPPYDAQIRRIYERWQAGDYAY-PVPGGESVLDVQRRALRALQTIL-ARHEGEAVLVVTHGRFLRILLASILPEYGLARMEALPHTNTAVNHLVCE--NGRFRALRLN 201
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Match: A0A2T2V8A4_9BACT (Histidine phosphatase family protein n=1 Tax=Bacteroidetes bacterium QS_8_68_28 TaxID=1919110 RepID=A0A2T2V8A4_9BACT) HSP 1 Score: 105 bits (261), Expect = 1.110e-22 Identity = 73/199 (36.68%), Postives = 101/199 (50.75%), Query Frame = 3
Query: 471 LVRHGQTDFNKRKICQGRRLNPPLNDVGREQARQLLPNF---SLDAIVCSPLRRARETAEIVQTSHLGTSVIMSNDLNEVDFGGAEGLPQAV-AAVVLAPSYMAWKVGRFEVRSVRAGESGEDLQQRTAAAVEVLLHACTEGSQVLAVTHSSMIKFMLATLLGVP--LSWIRKLGQDNCAVNALDFDPASGVWEAVVIN 1049
LVRHGQT++N++ I QGRR++ LN GR QA L F SLDA+ S +RRAR+TA V H G SV DL E+ +G EG P L W+ GR + GES D+Q+R A+ + G VL V H ++ ++A+LL L + ++ N VN L +D A G A ++N
Sbjct: 5 LVRHGQTEYNRKGIVQGRRVDSALNGTGRRQAEALAARFADASLDALYTSAMRRARQTARPVAARHPGLSVHPDEDLEEMSWGRFEGEPPTNDVRDALDDIKTDWRNGRLGRAARGGGESALDVQERALRAMRRIFAEQHAGGTVLVVAHGRFLRVLIASLLPARFGLRAMHRVEHANTGVNHLAYD-ARGACSARLLN 202
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Match: A0A1V4QNE9_9DELT (Uncharacterized protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A1V4QNE9_9DELT) HSP 1 Score: 104 bits (260), Expect = 1.360e-22 Identity = 72/199 (36.18%), Postives = 107/199 (53.77%), Query Frame = 3
Query: 462 RVLLVRHGQTDFNKRKICQGRRLNPPLNDVGREQAR---QLLPNFSLDAIVCSPLRRARETAEIVQTSHLGTSVIMSNDLNEVDFGGAEGLPQAVAAVVLAPSYMAWKVGRFEVRSVRAGESGEDLQQRTAAAVEVLLHACTEGSQVLAVTHSSMIKFMLATLLGVPLSWIRKLGQDNCAVNALDFDPASGVWEAVVIN 1049
R++LVRHG+T +NK KI +G ++ PLND GRE+AR + L +DA SPL RA ETAE + H G V L ++++G +G+P A Y W+ VR GE+ E+++ R AAV+ +L + + +LA H + K ++A +G+ S ++GQD AVN FD +W V IN
Sbjct: 3 RIILVRHGETPWNKDKIFRGS-VDIPLNDTGREEARLAGEWLKGEKIDAAYSSPLSRAMETAENIARHH-GVMVQKLEGLADLNYGDWQGMPLAEVKEKYTELYRQWETMPQNVRFPN-GETLEEVRVRALAAVDTVLQRHPDQNILLA-AHRVVNKVLIAAFIGLDNSHFWRIGQDTTAVNR--FDKVGPIWNIVTIN 195
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Match: UPI000C9F15AF (histidine phosphatase family protein n=3 Tax=Salinibacter altiplanensis TaxID=1803181 RepID=UPI000C9F15AF) HSP 1 Score: 105 bits (261), Expect = 1.370e-22 Identity = 77/200 (38.50%), Postives = 108/200 (54.00%), Query Frame = 3
Query: 471 LVRHGQTDFNKRKICQGRRLNPPLNDVGREQARQLLPNFS---LDAIVCSPLRRARETAEIVQTSHLGTSVIMSNDLNEVDFGGAEG---LPQAVAAVVLAPSYMAWKVGRFEVRSVRAGESGEDLQQRTAAAVEVLLHACTEGSQVLAVTHSSMIKFMLATLLG-VPLSWIRKLGQDNCAVNALDFDPASGVWEAVVIN 1049
LVRHG+T++N+R + QG ++ LN GREQAR L F+ +DA+ S LRRA +TA+I+ H S DL E+D+G EG P+ A+V S AW+ G ++ R+ GES D+Q R A+ +L A EG L VTH ++ +LATLL L + + G N VN + FD G A +N
Sbjct: 18 LVRHGETEYNRRGVMQGGGIDSTLNATGREQARALAHRFAPVDVDALYASTLRRAIQTADILAAEHESLSCTRLQDLREMDWGVFEGEPPSPERDASVDALKS--AWRNGDYD-RAPEEGESIRDVQGRVRRALRHIL-AQEEGGAALVVTHGRYLRVLLATLLDEYGLEHMSQFGHSNTCVNHVVFD--EGQTRAERLN 211
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Match: UPI0003B6969E (histidine phosphatase family protein n=1 Tax=Salisaeta longa TaxID=503170 RepID=UPI0003B6969E) HSP 1 Score: 104 bits (260), Expect = 1.540e-22 Identity = 70/206 (33.98%), Postives = 108/206 (52.43%), Query Frame = 3
Query: 444 VGVRTKRVLLVRHGQTDFNKRKICQGRRLNPPLNDVGREQARQLLPNFS---LDAIVCSPLRRARETAEIVQTSHLGTSVIMSNDLNEVDFGGAEGLPQAVAA-VVLAPSYMAWKVGRFEVRSVRAGESGEDLQQRTAAAVEVLLHACTEGSQVLAVTHSSMIKFMLATLLGVPLSWIRKLGQDNCAVNALDFDPASGVWEAVVIN 1049
V V T + LVRHG+T++N++ I QGR ++ LN GR QA+ L F+ D SPLRR R+TA +V H I DL E+ +G EG P A + W+ G ++ + GES D++ R AV +L A + G +L VTH ++ +LA++L L + ++G N VN L++ G ++A ++N
Sbjct: 7 VDVATTTLYLVRHGETEYNRQGIVQGRGIDADLNATGRAQAKALGERFATVDFDVAYVSPLRRTRQTARLVTARHRPLPTIYLKDLEEMAWGVYEGEPPAPDRDAAMNAIKEQWRAGTVDL-PIEGGESPRDVEARAQRAVHHMLEA-SAGRTILVVTHGRYLRVLLASVLERGLHNMHEMGHANTCVNHLEY--RDGRFQAKLLN 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64161.14002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig64161.14002.1 >prot_H-elongata_contig64161.14002.1 ID=prot_H-elongata_contig64161.14002.1|Name=mRNA_H-elongata_contig64161.14002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=300bp MGRKPLKQAKAVAKATAKVTAKAAVAAASTVVKMPPVVSAANEGDTRVTRback to top mRNA from alignment at H-elongata_contig64161:2..3030- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig64161.14002.1 ID=mRNA_H-elongata_contig64161.14002.1|Name=mRNA_H-elongata_contig64161.14002.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3029bp|location=Sequence derived from alignment at H-elongata_contig64161:2..3030- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig64161:2..3030- >mRNA_H-elongata_contig64161.14002.1 ID=mRNA_H-elongata_contig64161.14002.1|Name=mRNA_H-elongata_contig64161.14002.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1800bp|location=Sequence derived from alignment at H-elongata_contig64161:2..3030- (Himanthalia elongata Himel1 dioecious)back to top |