prot_H-elongata_contig64152.14001.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64152.14001.1
Unique Nameprot_H-elongata_contig64152.14001.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length108
Homology
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BLAST of mRNA_H-elongata_contig64152.14001.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.090e-23
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 0 
Query:    1 MKHIGSPLRAPDEMDKYLREIEDQRDLQRSRQLDLXXXXQRSQQHVAAATRRIRAPQWCSRLFANSAAGVGTGDSDCSGRHRGFLFELFELRNEPGEEKYLQALGSLL 108
            M+ IGSPLR  ++ + YLR ++DQR +QR RQLDL    + S+Q +AAA RR+ APQWCS+L  +   G G         HRGFLFE+FE+R   G+E +LQAL SLL
Sbjct:  246 MRQIGSPLRTAEDAEMYLRGVKDQRSIQRERQLDLSRALESSRQSLAAARRRVGAPQWCSQLVYSGGGGGG---------HRGFLFEVFEIRRGLGDEGHLQALASLL 344
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64152.14001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQC9_ECTSI3.090e-2350.93SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64152contigH-elongata_contig64152:2178..2955 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64152.14001.1mRNA_H-elongata_contig64152.14001.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64152 2178..2955 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64152.14001.1 ID=prot_H-elongata_contig64152.14001.1|Name=mRNA_H-elongata_contig64152.14001.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MKHIGSPLRAPDEMDKYLREIEDQRDLQRSRQLDLSRELQRSQQHVAAAT
RRIRAPQWCSRLFANSAAGVGTGDSDCSGRHRGFLFELFELRNEPGEEKY
LQALGSLL
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